ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105136.1| Zea mays PCO114928 mRNA sequence 113 7e-22
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
3dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
4dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
5dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
6emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 111 3e-21
7ref|XM_474409.1| Oryza sativa (japonica cultivar-group), predic... 107 4e-20
8emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 103 7e-19
9gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map... 42 2.2
10gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, comp... 42 2.2
11gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, comple... 42 2.2
12ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (L... 40 8.5
13gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com... 40 8.5
14gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chrom... 40 8.5
15gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.5
16gb|AC157994.2| Mus musculus BAC clone RP24-349B6 from chromosome... 40 8.5
17gb|DQ334055.1| Drosophila miranda CG10236 gene, partial cds 40 8.5
18emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chrom... 40 8.5
19emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chr... 40 8.5
20gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 8.5
21emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment ... 40 8.5
22emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A stra... 40 8.5
23dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 8.5
24gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.5
25dbj|AK013800.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 8.5
26gb|BC023079.1| Mus musculus RIKEN cDNA 2900078C09 gene, mRNA (cD... 40 8.5
27gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, co... 40 8.5
28gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.5
29dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
30emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.5
31gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2... 40 8.5
32gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, comple... 40 8.5
33gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosom... 40 8.5
34emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chro... 40 8.5 
>gb|AY105136.1| Zea mays PCO114928 mRNA sequence
          Length = 806

 Score =  113 bits (57), Expect = 7e-22
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                       
Query: 41  gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gggcggtgtgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 334

            
Query: 101 c 101
           |
Sbjct: 335 c 335



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 215 tcagcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctggg 266
           |||||||||||||||||||||| |||||| |||| || ||||| ||| ||||
Sbjct: 503 tcagcgtcacgctctgcagccctgagaggaatgtgatcggaggtgttttggg 554
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 3e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                            
Query: 409      gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
                ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 34957757 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 34957698

                                                                            
Query: 466      ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
                ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 34957697 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 34957638

                              
Query: 526      tctagaggatagct 539
                |||||||| |||||
Sbjct: 34957637 tctagaggctagct 34957624



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 217      agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
                ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 34958351 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 34958292

                           
Query: 277      gtagctgccag 287
                |||||||||||
Sbjct: 34958291 gtagctgccag 34958281



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 41       gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
                ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 34958643 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 34958584

                 
Query: 101      c 101
                |
Sbjct: 34958583 c 34958583
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>dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P17, full
            insert sequence
          Length = 2890

 Score =  111 bits (56), Expect = 3e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                        
Query: 409  gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
            ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 2607 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 2666

                                                                        
Query: 466  ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
            ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 2667 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 2726

                          
Query: 526  tctagaggatagct 539
            |||||||| |||||
Sbjct: 2727 tctagaggctagct 2740



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                        
Query: 217  agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
            ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 2400 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 2459

                                                                        
Query: 277  gtagctgccagtactgtgcaggtggtgctagggacttttgtgcaaggagggtccaaatca 336
            ||||||||||| || || |||||||| || |||| ||| ||||| |||||||| ||  | 
Sbjct: 2460 gtagctgccagcaccgttcaggtggtacttgggagtttcgtgcagggagggtcgaagccc 2519

                                  
Query: 337  aagtccaagaaagccgtgaaac 358
            ||||| ||||| |||| |||||
Sbjct: 2520 aagtcgaagaaggccgggaaac 2541



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 41   gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
            ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 2209 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 2268

             
Query: 101  c 101
            |
Sbjct: 2269 c 2269
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>dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J11, full
            insert sequence
          Length = 1869

 Score =  111 bits (56), Expect = 3e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                        
Query: 409  gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
            ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 1493 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 1552

                                                                        
Query: 466  ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
            ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 1553 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 1612

                          
Query: 526  tctagaggatagct 539
            |||||||| |||||
Sbjct: 1613 tctagaggctagct 1626



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                        
Query: 217  agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
            ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 1286 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 1345

                                                                        
Query: 277  gtagctgccagtactgtgcaggtggtgctagggacttttgtgcaaggagggtccaaatca 336
            ||||||||||| || || |||||||| || |||| ||| ||||| |||||||| ||  | 
Sbjct: 1346 gtagctgccagcaccgttcaggtggtacttgggagtttcgtgcagggagggtcgaagccc 1405

                                  
Query: 337  aagtccaagaaagccgtgaaac 358
            ||||| ||||| |||| |||||
Sbjct: 1406 aagtcgaagaaggccgggaaac 1427



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 41   gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
            ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 1095 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 1154

             
Query: 101  c 101
            |
Sbjct: 1155 c 1155
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>dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A09, full
            insert sequence
          Length = 1685

 Score =  111 bits (56), Expect = 3e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                        
Query: 409  gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
            ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 1323 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 1382

                                                                        
Query: 466  ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
            ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 1383 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 1442

                          
Query: 526  tctagaggatagct 539
            |||||||| |||||
Sbjct: 1443 tctagaggctagct 1456



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                        
Query: 217  agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
            ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 1116 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 1175

                                                                        
Query: 277  gtagctgccagtactgtgcaggtggtgctagggacttttgtgcaaggagggtccaaatca 336
            ||||||||||| || || |||||||| || |||| ||| ||||| |||||||| ||  | 
Sbjct: 1176 gtagctgccagcaccgttcaggtggtacttgggagtttcgtgcagggagggtcgaagccc 1235

                                  
Query: 337  aagtccaagaaagccgtgaaac 358
            ||||| ||||| |||| |||||
Sbjct: 1236 aagtcgaagaaggccgggaaac 1257



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
           ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 925 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 984

            
Query: 101 c 101
           |
Sbjct: 985 c 985
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  111 bits (56), Expect = 3e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                         
Query: 409   gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
             ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 16809 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 16750

                                                                         
Query: 466   ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
             ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 16749 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 16690

                           
Query: 526   tctagaggatagct 539
             |||||||| |||||
Sbjct: 16689 tctagaggctagct 16676



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 217   agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
             ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 17403 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 17344

                        
Query: 277   gtagctgccag 287
             |||||||||||
Sbjct: 17343 gtagctgccag 17333



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 41    gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
             ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 17695 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 17636

              
Query: 101   c 101
             |
Sbjct: 17635 c 17635
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>ref|XM_474409.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score =  107 bits (54), Expect = 4e-20
 Identities = 110/128 (85%), Gaps = 3/128 (2%)
 Strand = Plus / Plus

                                                                        
Query: 409  gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
            ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||||
Sbjct: 940  gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacg 999

                                                                        
Query: 466  ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
            ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 1000 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 1059

                    
Query: 526  tctagagg 533
            ||||||||
Sbjct: 1060 tctagagg 1067



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217 agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
           ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 733 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 792

                                                                       
Query: 277 gtagctgccagtactgtgcaggtggtgctagggacttttgtgcaaggagggtccaaatca 336
           ||||||||||| || || |||||||| || |||| ||| ||||| |||||||| ||  | 
Sbjct: 793 gtagctgccagcaccgttcaggtggtacttgggagtttcgtgcagggagggtcgaagccc 852

                                 
Query: 337 aagtccaagaaagccgtgaaac 358
           ||||| ||||| |||| |||||
Sbjct: 853 aagtcgaagaaggccgggaaac 874



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
           ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 542 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 601

            
Query: 101 c 101
           |
Sbjct: 602 c 602
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  103 bits (52), Expect = 7e-19
 Identities = 114/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                         
Query: 409   gcgtcacccagctcaggacataaccaaaacctaacgccgccctccattgt---aacgacg 465
             ||||| || ||||| || ||||||||||| |||||||||||  ||  |||   |||||| 
Sbjct: 63138 gcgtcgccgagctccggccataaccaaaatctaacgccgccgccccctgtaacaacgacc 63079

                                                                         
Query: 466   ggaggatggcctagctctgggatatttgacacgcgaagctccaatattgatatcaactct 525
             ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| 
Sbjct: 63078 ggagggtggcctagctccgggatatttgacacgagaagttccaacattgatatcaactca 63019

                           
Query: 526   tctagaggatagct 539
             |||||||| |||||
Sbjct: 63018 tctagaggctagct 63005



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 217   agcgtcacgctctgcagcccggagaggcatgtcattggaggcgttctgggtggcgcattg 276
             ||||| ||||| |||||||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 63732 agcgtgacgctgtgcagccccgagaggcatatcattggaggcgttctcggcggagcattg 63673

                        
Query: 277   gtagctgccag 287
             |||||||||||
Sbjct: 63672 gtagctgccag 63662



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 41    gggcggtatgcgtgctctcggcgatgggctccgtctccagggccgtcctccgccacccgg 100
             ||||||| |||||||||||||| |  |||||||||||| |||  ||||||||||||||||
Sbjct: 64024 gggcggtgtgcgtgctctcggccaccggctccgtctcccgggtggtcctccgccacccgg 63965

              
Query: 101   c 101
             |
Sbjct: 63964 c 63964
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>gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 202316

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 476    ctagctctgggatatttgaca 496
              |||||||||||||||||||||
Sbjct: 124784 ctagctctgggatatttgaca 124804
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>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence
          Length = 189224

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 417   cagctcaggacataaccaaaaccta 441
             ||||||||||||||||| |||||||
Sbjct: 87541 cagctcaggacataacctaaaccta 87565
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>gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, complete sequence
          Length = 206973

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   ctagctctgggatatttgaca 496
             |||||||||||||||||||||
Sbjct: 22223 ctagctctgggatatttgaca 22243
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>ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (LOC511583), partial
            mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  ctgcagcccggagaggcatg 247
            ||||||||||||||||||||
Sbjct: 1816 ctgcagcccggagaggcatg 1835
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>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence
          Length = 179087

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    ttatctggctcttacaatct 182
              ||||||||||||||||||||
Sbjct: 167299 ttatctggctcttacaatct 167318
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>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete
              sequence
          Length = 166804

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 596    ccaaatgtatactttgaaat 615
              ||||||||||||||||||||
Sbjct: 106265 ccaaatgtatactttgaaat 106284
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>gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 25 of
             256 of the complete sequence
          Length = 11346

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   gtgaaaccgccggcggcctt 371
             ||||||||||||||||||||
Sbjct: 10384 gtgaaaccgccggcggcctt 10365
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>gb|AC157994.2| Mus musculus BAC clone RP24-349B6 from chromosome 9, complete sequence
          Length = 226187

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 572   tttttctgttcctgaaaagaatac 595
             ||||||||||||||||||| ||||
Sbjct: 91045 tttttctgttcctgaaaaggatac 91068
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>gb|DQ334055.1| Drosophila miranda CG10236 gene, partial cds
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  tgggctccgtctccagggcc 84
           ||||||||||||||||||||
Sbjct: 568 tgggctccgtctccagggcc 549
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>emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chromosome 1p32.1-32.3
              Contains the 5' end of the ROR1 gene for receptor tyrosine
              kinase-like orphan receptor 1, a ribosomal protein L19
              (RPL19) pseudogene, a cofilin 1 (non-muscle) (CFL1)
              pseudogene and a CpG island, complete sequence
          Length = 114409

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    cctccttcctacaacaatcc 128
              ||||||||||||||||||||
Sbjct: 105775 cctccttcctacaacaatcc 105794
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>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3
            Contains a high mobility group (nonhistone chromosomal)
            protein 4 (HMG4) pseudogene, complete sequence
          Length = 156667

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 584  tgaaaagaatacccaaatgt 603
            ||||||||||||||||||||
Sbjct: 5061 tgaaaagaatacccaaatgt 5080
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>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
             Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ttatctggctcttacaatct 182
             ||||||||||||||||||||
Sbjct: 13102 ttatctggctcttacaatct 13083
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>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24
          Length = 311050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cattcgcgagccagtcgccg 40
              ||||||||||||||||||||
Sbjct: 234491 cattcgcgagccagtcgccg 234472
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>emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 7/7
          Length = 195767

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ccagcaaaatcaaaccgatg 211
             ||||||||||||||||||||
Sbjct: 55754 ccagcaaaatcaaaccgatg 55735
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     agggccagcaaaatcaaacc 207
               ||||||||||||||||||||
Sbjct: 2794385 agggccagcaaaatcaaacc 2794404
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    gtgaaaccgccggcggcctt 371
              ||||||||||||||||||||
Sbjct: 273305 gtgaaaccgccggcggcctt 273286
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>dbj|AK013800.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900078C09 product:hypothetical
           protein, full insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 572 tttttctgttcctgaaaagaatac 595
           ||||||||||||||||||| ||||
Sbjct: 12  tttttctgttcctgaaaaggatac 35
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>gb|BC023079.1| Mus musculus RIKEN cDNA 2900078C09 gene, mRNA (cDNA clone
           IMAGE:5358868), partial cds
          Length = 1684

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 572 tttttctgttcctgaaaagaatac 595
           ||||||||||||||||||| ||||
Sbjct: 308 tttttctgttcctgaaaaggatac 331
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>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   ttatctggctcttacaatct 182
             ||||||||||||||||||||
Sbjct: 12770 ttatctggctcttacaatct 12789
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    ccagcaaaatcaaaccgatg 211
              ||||||||||||||||||||
Sbjct: 397983 ccagcaaaatcaaaccgatg 398002
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>dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A01, full
            insert sequence
          Length = 2870

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  ggcgctgggccagacgtggc 410
            ||||||||||||||||||||
Sbjct: 2471 ggcgctgggccagacgtggc 2490
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      cgagccagtcgccggggcgg 46
               ||||||||||||||||||||
Sbjct: 3450063 cgagccagtcgccggggcgg 3450044
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>gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2-dioxygenase (clcA),
           chloromuconate cycloisomerase (clcB), and dienelactone
           hydrolase (clcD) genes, complete cds; and unknown gene
          Length = 4661

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 cgagtcgctcgccggcgctg 397
           ||||||||||||||||||||
Sbjct: 734 cgagtcgctcgccggcgctg 753
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>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence
          Length = 191211

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ttatctggctcttacaatct 182
              ||||||||||||||||||||
Sbjct: 154716 ttatctggctcttacaatct 154697
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>gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence
          Length = 179209

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ttatctggctcttacaatct 182
             ||||||||||||||||||||
Sbjct: 81123 ttatctggctcttacaatct 81104
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>emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chromosome 3, complete
             sequence
          Length = 67491

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ttatctggctcttacaatct 182
             ||||||||||||||||||||
Sbjct: 61279 ttatctggctcttacaatct 61260


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,359,130
Number of Sequences: 3902068
Number of extensions: 4359130
Number of successful extensions: 78169
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77974
Number of HSP's gapped (non-prelim): 195
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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