ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baald08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 271 ctcccagacctcggcctcggcgggttggtggacttcgtcgcgcagaacccgct 323 ||||| |||||||||||||||||| || | |||||||| |||||||||||||| Sbjct: 8872451 ctcccggacctcggcctcggcggggtgctcgacttcgtggcgcagaacccgct 8872503 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 178 ggcggcagcgccgctctcgccgctcctctctcctacgaggagatgctgcggctctc 233 |||| ||||||||| |||||||| || || ||||||||||||| |||||| ||||| Sbjct: 8872346 ggcgccagcgccgcgctcgccgcgccgctgtcctacgaggagacgctgcgtctctc 8872401 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 421 gccgcgtaccggaggcttctggaggagcctgacgcgcagctcgtcgacatcaggccgc 478 |||||||||||| ||| |||||||||| | ||||||||| || ||||||||||||| Sbjct: 8872601 gccgcgtaccgggcgctggtggaggagcccggcgcgcagctggtggacatcaggccgc 8872658 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 18091495 cgcagaacccgctcgacgtcgccg 18091518 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 13554482 cgcagaacccgctcgacgtcgccg 13554459
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 271 ctcccagacctcggcctcggcgggttggtggacttcgtcgcgcagaacccgct 323 ||||| |||||||||||||||||| || | |||||||| |||||||||||||| Sbjct: 77469 ctcccggacctcggcctcggcggggtgctcgacttcgtggcgcagaacccgct 77521 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 178 ggcggcagcgccgctctcgccgctcctctctcctacgaggagatgctgcggctctc 233 |||| ||||||||| |||||||| || || ||||||||||||| |||||| ||||| Sbjct: 77364 ggcgccagcgccgcgctcgccgcgccgctgtcctacgaggagacgctgcgtctctc 77419 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 421 gccgcgtaccggaggcttctggaggagcctgacgcgcagctcgtcgacatcaggccgc 478 |||||||||||| ||| |||||||||| | ||||||||| || ||||||||||||| Sbjct: 77619 gccgcgtaccgggcgctggtggaggagcccggcgcgcagctggtggacatcaggccgc 77676
>ref|XM_469956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 766 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 532 gcagaacccgctcgtcgtcgccg 554
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 65393 gcagaacccgctcgtcgtcgccg 65415
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 32678514 gcagaacccgctcgtcgtcgccg 32678492
>gb|AY526867.1| Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor (ZFP48) mRNA, complete cds Length = 614 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 532 gcagaacccgctcgtcgtcgccg 554
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 32769024 gcagaacccgctcgtcgtcgccg 32769002
>dbj|AK108205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D04, full insert sequence Length = 766 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 gcagaacccgctcgtcgtcgccg 334 ||||||||||||||||||||||| Sbjct: 532 gcagaacccgctcgtcgtcgccg 554
>ref|XM_855609.1| PREDICTED: Canis familiaris hypothetical protein LOC608111 (LOC608111), mRNA Length = 780 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 gcgcctcccccttggaggcccc 144 |||||||||||||||||||||| Sbjct: 536 gcgcctcccccttggaggcccc 557
>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence Length = 271577 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 ggacgcccgggaggtcggctc 503 ||||||||||||||||||||| Sbjct: 260526 ggacgcccgggaggtcggctc 260506
>gb|AE005950.1| Caulobacter crescentus CB15 section 276 of 359 of the complete genome Length = 12754 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 gggcctcttcgccacgctcgg 170 ||||||||||||||||||||| Sbjct: 10722 gggcctcttcgccacgctcgg 10702
>gb|AC084292.23|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 192003 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 246 cggtggtgggggtgacgggttctccctcc 274 ||||||||| ||||| ||||||||||||| Sbjct: 18616 cggtggtggtggtgaggggttctccctcc 18588
>gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complete sequence Length = 138380 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 cggtggtgggggtgacgggttctccctcc 274 ||||||||| ||||| ||||||||||||| Sbjct: 24720 cggtggtggtggtgaggggttctccctcc 24748
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 3486546 gggcttcgccgtggtcgccg 3486527
>ref|NM_195748.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0008A05.18), mRNA Length = 546 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 275 cgctcgtcgtcgccgcgggc 256
>ref|NM_192404.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 641 cgctcgtcgtcgccgcgggc 622
>ref|XM_476742.1| Oryza sativa (japonica cultivar-group), mRNA Length = 465 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 cagaacccgctcgtcgtcgc 332 |||||||||||||||||||| Sbjct: 424 cagaacccgctcgtcgtcgc 443
>gb|AY655137.1| Streptomyces globisporus polyketide synthase type I glo2 gene, partial cds Length = 425 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ccgcgggcttcgccgtggtcgccg 355 ||||||||||| |||||||||||| Sbjct: 317 ccgcgggcttctccgtggtcgccg 340
>ref|XM_653569.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1057.2), mRNA Length = 2325 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 tcgtcgacatcaggccgctc 480 |||||||||||||||||||| Sbjct: 320 tcgtcgacatcaggccgctc 301
>gb|AC002040.1|HUAC002040 Homo sapiens Chromosome 16 BAC clone CIT987-SK142A6 complete genomic sequence, complete sequence Length = 128765 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcgtttcccaggttcttggc 384 |||||||||||||||||||| Sbjct: 79318 tcgtttcccaggttcttggc 79299
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 gcaatggccgccatcgtctc 55 |||||||||||||||||||| Sbjct: 1663808 gcaatggccgccatcgtctc 1663827
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tctcctacgaggagatgctg 225 |||||||||||||||||||| Sbjct: 45175 tctcctacgaggagatgctg 45156
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 305233 gggcttcgccgtggtcgccg 305252
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 213077 gggcttcgccgtggtcgccg 213096
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 78365 gggcttcgccgtggtcgccg 78384
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete sequence Length = 121130 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 44387 cgcagaacccgctcgacgtcgccg 44364
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcctcttcgccacgctcggattg 174 |||||| ||||||||||||||||| Sbjct: 1531137 ggcctcatcgccacgctcggattg 1531160
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 32853 cgctcgtcgtcgccgcgggc 32872
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 412 tccgggaaggccgcgtaccggaggcttc 439 ||||||||||| |||||||||| ||||| Sbjct: 3394744 tccgggaaggcagcgtaccggacgcttc 3394771
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 83318 cgctcgtcgtcgccgcgggc 83337
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence Length = 133862 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ttctccctcccagacctcgg 284 |||||||||||||||||||| Sbjct: 69063 ttctccctcccagacctcgg 69082
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 4212047 gggcttcgccgtggtcgccg 4212066 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 4043748 gggcttcgccgtggtcgccg 4043729 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 4024520 gggcttcgccgtggtcgccg 4024501 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 3990691 gggcttcgccgtggtcgccg 3990710 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2960210 gggcttcgccgtggtcgccg 2960191 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2888077 gggcttcgccgtggtcgccg 2888096 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2758885 gggcttcgccgtggtcgccg 2758904 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2690524 gggcttcgccgtggtcgccg 2690543 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2405213 gggcttcgccgtggtcgccg 2405232 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2337411 gggcttcgccgtggtcgccg 2337430 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 1526804 gggcttcgccgtggtcgccg 1526785 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 1246132 gggcttcgccgtggtcgccg 1246113 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 847449 gggcttcgccgtggtcgccg 847468 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 685567 gggcttcgccgtggtcgccg 685586 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 520157 gggcttcgccgtggtcgccg 520176 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 324687 gggcttcgccgtggtcgccg 324668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 183719 gggcttcgccgtggtcgccg 183700
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 2402873 gggcttcgccgtggtcgccg 2402892
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 21978465 cgcagaacccgctcgacgtcgccg 21978442
>ref|XM_393412.2| PREDICTED: Apis mellifera similar to ENSANGP00000002836 (LOC409921), mRNA Length = 1451 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 464 tcgacatcaggccgctcaaggacgcccgggag 495 |||| ||| |||||||| |||||||||||||| Sbjct: 732 tcgatatccggccgctcgaggacgcccgggag 763
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 17701975 cgcagaacccgctcgacgtcgccg 17701998
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 8828246 cgctcgtcgtcgccgcgggc 8828265
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 15926573 cgcagaacccgctcgacgtcgccg 15926596
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cagaacccgctcgtcgtcgc 332 |||||||||||||||||||| Sbjct: 3717381 cagaacccgctcgtcgtcgc 3717362 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgctcgtcgtcgccgcggg 338 |||||||||||||||||||| Sbjct: 450368 ccgctcgtcgtcgccgcggg 450387
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 25709777 cgcagaacccgctcgacgtcgccg 25709800
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 26414287 cgctcgtcgtcgccgcgggc 26414268
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20, complete sequence Length = 99855 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 51036 cgcagaacccgctcgacgtcgccg 51013
>gb|AC127459.3| Homo sapiens chromosome 16 clone RP11-20G6, complete sequence Length = 172331 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcgtttcccaggttcttggc 384 |||||||||||||||||||| Sbjct: 51226 tcgtttcccaggttcttggc 51207
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 atggcggcagcgccgctctc 195 |||||||||||||||||||| Sbjct: 7235504 atggcggcagcgccgctctc 7235523
>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence Length = 98620 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ttctccctcccagacctcgg 284 |||||||||||||||||||| Sbjct: 10968 ttctccctcccagacctcgg 10987
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 88152 cgctcgtcgtcgccgcgggc 88133
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 22906 cgctcgtcgtcgccgcgggc 22887
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tctcctacgaggagatgctg 225 |||||||||||||||||||| Sbjct: 334621 tctcctacgaggagatgctg 334640
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 133222 cgcagaacccgctcgacgtcgccg 133245
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 89699 cgcagaacccgctcgacgtcgccg 89722
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgctcgtcgtcgccgcggg 338 |||||||||||||||||||| Sbjct: 52532 ccgctcgtcgtcgccgcggg 52551
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cagaacccgctcgtcgtcgc 332 |||||||||||||||||||| Sbjct: 61732 cagaacccgctcgtcgtcgc 61713
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 14896 cgcagaacccgctcgacgtcgccg 14919
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 69787 cgcagaacccgctcgacgtcgccg 69764
>dbj|AK110920.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D01, full insert sequence Length = 1719 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 767 cgctcgtcgtcgccgcgggc 748
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggcttcgccgtggtcgccg 355 |||||||||||||||||||| Sbjct: 968976 gggcttcgccgtggtcgccg 968995
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgctcgtcgtcgccgcggg 338 |||||||||||||||||||| Sbjct: 4280 ccgctcgtcgtcgccgcggg 4299
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgctcgtcgtcgccgcgggc 339 |||||||||||||||||||| Sbjct: 8833385 cgctcgtcgtcgccgcgggc 8833404
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 17656346 cgcagaacccgctcgacgtcgccg 17656369
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 cgcagaacccgctcgtcgtcgccg 334 ||||||||||||||| |||||||| Sbjct: 79378 cgcagaacccgctcgacgtcgccg 79355 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,795,355 Number of Sequences: 3902068 Number of extensions: 2795355 Number of successful extensions: 55784 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54092 Number of HSP's gapped (non-prelim): 1692 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
