ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah20m21 |
|---|---|
| Clone Library Name | barley_pub |
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 33.9 bits (76), Expect = 0.37 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQL 542 K +FP SA LH + P + EED L GG V F F D+ L+Q+ Sbjct: 444 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQM 498
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 33.5 bits (75), Expect = 0.48 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQL 542 K +FP SA LH + P + E+D L GG V F F D+ L+Q+ Sbjct: 440 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQM 494
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 33.5 bits (75), Expect = 0.48 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQL 542 K +FP SA LH + P + E+D L GG V F F D+ L+Q+ Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQM 522
>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 557 Score = 32.7 bits (73), Expect = 0.82 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQL 542 K +FP SA LH + P + EED L GG V F F D+ L+Q+ Sbjct: 470 KNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQM 524
>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural| polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQLA 545 K +FP SA LH + P + EED L GG V F F D L+Q+A Sbjct: 445 KNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFF-QDHKMALLQMA 499
>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched| polypyrimidine tract-binding protein) (Brain-enriched PTB) (RRM-type RNA-binding protein brPTB) (Neural polypyrimidine tract-binding protein) Length = 531 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQLA 545 K +FP SA LH + P + EED L GG V F F D L+Q+A Sbjct: 445 KNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFF-QDHKMALLQMA 499
>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched| homolog of PTB) (Neural polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQLA 545 K +FP SA LH + P + EED L GG V F F D L+Q+A Sbjct: 445 KNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFF-QDHKMALLQMA 499
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +3 Query: 378 KETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDFPADKAKGLMQL 542 K +FP SA LH + P + E+D L GG V F F D+ L+Q+ Sbjct: 444 KNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQM 498
>CB024_BOVIN (Q5E9J2) Protein C2orf24 homolog| Length = 411 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = -2 Query: 244 RLSRLQAMAKLVALSPCLAEAAAISDLSLGSTSEPPPLPPKLAAGRR 104 +LS L AMA + +++ +A A I SLG + PPP PP L R Sbjct: 230 KLSCLLAMAYVSSVALAVASMAVIHQ-SLGLSCSPPPGPPDLGLASR 275
>DNAE2_PSEU2 (Q4ZTG0) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1031 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 219 AMACSLLSRYVRQNGAAAAELGLGINKGEAEAQRAAD 329 A AC R++R+ A LG+G+++G + QR AD Sbjct: 132 AQACLAGGRWLRERFAERLWLGVGLHRGPDDEQRLAD 168
>YF2E_SCHPO (O13779) Putative metal ion transporter C17A12.14| Length = 617 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +3 Query: 375 KKETMELFPQSAGLHDAAAPDATREEDKSQLTIFYGGKVIVFNDF 509 K+E + + ++ G+H D T EED+ ++ +F + F F Sbjct: 314 KEEEIRVLAKAFGIHPLTVEDITLEEDREKVELFRTYYFVTFRSF 358
>ASCC2_HUMAN (Q9H1I8) Activating signal cointegrator 1 complex subunit 2 (ASC-1| complex subunit p100) (Trip4 complex subunit p100) Length = 757 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 5 THDRQQHEEGKPSRANHHRRRETSNHERASSIPS 106 T +R++ E K +RANH+RR IPS Sbjct: 724 TQERRKKEANKATRANHNRRTMADRKRSKGMIPS 757
>ASCC2_MOUSE (Q91WR3) Activating signal cointegrator 1 complex subunit 2 (ASC-1| complex subunit p100) (Trip4 complex subunit p100) Length = 749 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 5 THDRQQHEEGKPSRANHHRRRETSNHERASSIPS 106 T +R++ E K +RANH+RR IPS Sbjct: 716 TQERRKKEANKAARANHNRRTMADRKRSKGMIPS 749 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,912,653 Number of Sequences: 219361 Number of extensions: 830140 Number of successful extensions: 3693 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3448 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3682 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
