ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah18l14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103682.1| Zea mays PCO122909 mRNA sequence Length = 1641 Score = 264 bits (133), Expect = 2e-67 Identities = 241/277 (87%) Strand = Plus / Plus Query: 3 ctggtcttatttgtgggagaggcattggttgggaatgacgcagttgatcagctcaacaag 62 ||||| |||||||| ||||| ||||||||||| ||||| || || |||||||||| || Sbjct: 1106 ctggttttatttgttggagaagcattggttggaaatgatgctgtggatcagctcactaaa 1165 Query: 63 ttcaatcagaaattggcagatctttccactgttccaacagctagactgatcgatggtatc 122 || || |||||| | ||||| || || ||||||| || |||||| |||||||||||||| Sbjct: 1166 tttaaccagaaactagcagacctatctgctgttcccactgctagattgatcgatggtatc 1225 Query: 123 ctgctcaccaagtttgacactatcgatgacaaggttggagccgcactgtccatggtttac 182 |||||||||||||||||||| ||||| |||||||||||||| || || |||||||| ||| Sbjct: 1226 ctgctcaccaagtttgacaccatcgacgacaaggttggagcagcgctttccatggtctac 1285 Query: 183 atatctggatctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaag 242 ||||||||| |||| ||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 1286 atatctggagctccagtcatgttcgttggctgtggtcagtcctacacggacctgaagaag 1345 Query: 243 ctgaatgtgaaatccatcgtgaagaccctactgaagt 279 ||||| ||||||||||| ||||||||||| ||||||| Sbjct: 1346 ctgaacgtgaaatccattgtgaagaccctcctgaagt 1382
>ref|XM_482982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2130 Score = 212 bits (107), Expect = 8e-52 Identities = 230/271 (84%) Strand = Plus / Plus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctcaacaagttcaat 68 |||||||| || || ||||||||||| ||||| || |||||||| |||| || || || Sbjct: 1646 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactcactaaatttaac 1705 Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 1706 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 1765 Query: 129 accaagtttgacactatcgatgacaaggttggagccgcactgtccatggtttacatatct 188 |||||||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1766 accaagtttgacaccatcgacgacaaggttggagctgcactttcaatggtttatatatct 1825 Query: 189 ggatctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaagctgaat 248 ||| |||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||| Sbjct: 1826 ggagctccagtcatgttcgttggctgtggtcagtcttacactgacctcaagaagctcaat 1885 Query: 249 gtgaaatccatcgtgaagaccctactgaagt 279 || ||||||||||| || ||||| ||||||| Sbjct: 1886 gtcaaatccatcgttaaaaccctgctgaagt 1916
>ref|XM_482983.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2332 Score = 212 bits (107), Expect = 8e-52 Identities = 230/271 (84%) Strand = Plus / Plus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctcaacaagttcaat 68 |||||||| || || ||||||||||| ||||| || |||||||| |||| || || || Sbjct: 1756 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactcactaaatttaac 1815 Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 1816 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 1875 Query: 129 accaagtttgacactatcgatgacaaggttggagccgcactgtccatggtttacatatct 188 |||||||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1876 accaagtttgacaccatcgacgacaaggttggagctgcactttcaatggtttatatatct 1935 Query: 189 ggatctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaagctgaat 248 ||| |||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||| Sbjct: 1936 ggagctccagtcatgttcgttggctgtggtcagtcttacactgacctcaagaagctcaat 1995 Query: 249 gtgaaatccatcgtgaagaccctactgaagt 279 || ||||||||||| || ||||| ||||||| Sbjct: 1996 gtcaaatccatcgttaaaaccctgctgaagt 2026
>dbj|AK101591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051D02, full insert sequence Length = 2331 Score = 212 bits (107), Expect = 8e-52 Identities = 230/271 (84%) Strand = Plus / Plus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctcaacaagttcaat 68 |||||||| || || ||||||||||| ||||| || |||||||| |||| || || || Sbjct: 1755 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactcactaaatttaac 1814 Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 1815 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 1874 Query: 129 accaagtttgacactatcgatgacaaggttggagccgcactgtccatggtttacatatct 188 |||||||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1875 accaagtttgacaccatcgacgacaaggttggagctgcactttcaatggtttatatatct 1934 Query: 189 ggatctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaagctgaat 248 ||| |||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||| Sbjct: 1935 ggagctccagtcatgttcgttggctgtggtcagtcttacactgacctcaagaagctcaat 1994 Query: 249 gtgaaatccatcgtgaagaccctactgaagt 279 || ||||||||||| || ||||| ||||||| Sbjct: 1995 gtcaaatccatcgttaaaaccctgctgaagt 2025
>dbj|AK065513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033N04, full insert sequence Length = 2130 Score = 212 bits (107), Expect = 8e-52 Identities = 230/271 (84%) Strand = Plus / Plus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctcaacaagttcaat 68 |||||||| || || ||||||||||| ||||| || |||||||| |||| || || || Sbjct: 1646 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactcactaaatttaac 1705 Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 1706 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 1765 Query: 129 accaagtttgacactatcgatgacaaggttggagccgcactgtccatggtttacatatct 188 |||||||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1766 accaagtttgacaccatcgacgacaaggttggagctgcactttcaatggtttatatatct 1825 Query: 189 ggatctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaagctgaat 248 ||| |||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||| Sbjct: 1826 ggagctccagtcatgttcgttggctgtggtcagtcttacactgacctcaagaagctcaat 1885 Query: 249 gtgaaatccatcgtgaagaccctactgaagt 279 || ||||||||||| || ||||| ||||||| Sbjct: 1886 gtcaaatccatcgttaaaaccctgctgaagt 1916
>gb|AY372539.1| Cucumis sativus signal recognition particle receptor protein mRNA, partial cds Length = 1128 Score = 131 bits (66), Expect = 2e-27 Identities = 135/158 (85%) Strand = Plus / Plus Query: 105 agactgatcgatggtatcctgctcaccaagtttgacactatcgatgacaaggttggagcc 164 |||||||| ||||||||| ||||||| ||||| ||||| ||||| |||||||||||||| Sbjct: 766 agactgattgatggtatcttgctcacaaagttcgacaccatcgacgacaaggttggagca 825 Query: 165 gcactgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcc 224 ||| |||| ||||| |||||||||||| | ||||| ||||||||||| || || ||||| Sbjct: 826 gcattgtctatggtctacatatctggagcaccggtaatgttcgtcggctgtggacagtca 885 Query: 225 tacactgacctgaagaagctgaatgtgaaatccatcgt 262 || || ||||| |||||||| ||||| ||||| ||||| Sbjct: 886 tataccgacctcaagaagctcaatgtcaaatcaatcgt 923
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 123 bits (62), Expect = 5e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 154 aggttggagccgcactgtccatggtttacatatctggatctccggtcatgttcgtcggat 213 |||||||||| ||||| || |||||||| ||||||||| |||| ||||||||||| || | Sbjct: 23710952 aggttggagctgcactttcaatggtttatatatctggagctccagtcatgttcgttggct 23710893 Query: 214 gcggtcagtcctacactgacctgaagaagctgaatgtgaaatccatcgtgaagaccctac 273 | |||||||| ||||||||||| |||||||| ||||| ||||||||||| || ||||| | Sbjct: 23710892 gtggtcagtcttacactgacctcaagaagctcaatgtcaaatccatcgttaaaaccctgc 23710833 Query: 274 tgaagt 279 |||||| Sbjct: 23710832 tgaagt 23710827 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 23711123 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 23711064 Query: 129 accaagtttgacactatcgatgacaaggt 157 |||||||||||||| ||||| |||||||| Sbjct: 23711063 accaagtttgacaccatcgacgacaaggt 23711035 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctca 57 |||||||| || || ||||||||||| ||||| || |||||||| |||| Sbjct: 23711429 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactca 23711381
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 123 bits (62), Expect = 5e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 154 aggttggagccgcactgtccatggtttacatatctggatctccggtcatgttcgtcggat 213 |||||||||| ||||| || |||||||| ||||||||| |||| ||||||||||| || | Sbjct: 152 aggttggagctgcactttcaatggtttatatatctggagctccagtcatgttcgttggct 93 Query: 214 gcggtcagtcctacactgacctgaagaagctgaatgtgaaatccatcgtgaagaccctac 273 | |||||||| ||||||||||| |||||||| ||||| ||||||||||| || ||||| | Sbjct: 92 gtggtcagtcttacactgacctcaagaagctcaatgtcaaatccatcgttaaaaccctgc 33 Query: 274 tgaagt 279 |||||| Sbjct: 32 tgaagt 27 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 323 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 264 Query: 129 accaagtttgacactatcgatgacaaggt 157 |||||||||||||| ||||| |||||||| Sbjct: 263 accaagtttgacaccatcgacgacaaggt 235 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctca 57 |||||||| || || ||||||||||| ||||| || |||||||| |||| Sbjct: 629 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactca 581
>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1113_A10 Length = 160089 Score = 123 bits (62), Expect = 5e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 154 aggttggagccgcactgtccatggtttacatatctggatctccggtcatgttcgtcggat 213 |||||||||| ||||| || |||||||| ||||||||| |||| ||||||||||| || | Sbjct: 118548 aggttggagctgcactttcaatggtttatatatctggagctccagtcatgttcgttggct 118489 Query: 214 gcggtcagtcctacactgacctgaagaagctgaatgtgaaatccatcgtgaagaccctac 273 | |||||||| ||||||||||| |||||||| ||||| ||||||||||| || ||||| | Sbjct: 118488 gtggtcagtcttacactgacctcaagaagctcaatgtcaaatccatcgttaaaaccctgc 118429 Query: 274 tgaagt 279 |||||| Sbjct: 118428 tgaagt 118423 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 69 cagaaattggcagatctttccactgttccaacagctagactgatcgatggtatcctgctc 128 |||||||| ||||| |||||| |||| || || | ||| |||| ||||| ||||||||| Sbjct: 118719 cagaaattagcagacctttccgctgtccctactaccagattgatagatggcatcctgctc 118660 Query: 129 accaagtttgacactatcgatgacaaggt 157 |||||||||||||| ||||| |||||||| Sbjct: 118659 accaagtttgacaccatcgacgacaaggt 118631 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 9 ttatttgtgggagaggcattggttgggaatgacgcagttgatcagctca 57 |||||||| || || ||||||||||| ||||| || |||||||| |||| Sbjct: 119025 ttatttgttggggaagcattggttggtaatgatgctgttgatcaactca 118977
>ref|NM_119206.3| Arabidopsis thaliana GTP binding / GTPase/ RNA binding / nucleoside-triphosphatase/ nucleotide binding / signal recognition particle binding AT4G30600 mRNA, complete cds Length = 2248 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Plus Query: 105 agactgatcgatggtatcctgctcaccaagtttgacactatcgatgacaaggttggagcc 164 |||||||||||||| ||| | || || |||||||| || || || |||||||| ||||| Sbjct: 1831 agactgatcgatggaatcttacttacaaagtttgataccattgacgacaaggtcggagca 1890 Query: 165 gcactgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcc 224 || |||| |||||||||||||| ||||| ||||| |||||||| || || || ||||| Sbjct: 1891 gcgttgtctatggtttacatatcgggatcaccggttatgttcgtgggttgtggccagtct 1950 Query: 225 tacactgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||||||||||||||||||| ||||| ||| |||| || ||||| Sbjct: 1951 tacactgacctgaagaagcttaatgtcaaagccatagtcaagac 1994
>gb|AY133612.1| Arabidopsis thaliana AT4g30600/F17I23_60 mRNA, complete cds Length = 1905 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Plus Query: 105 agactgatcgatggtatcctgctcaccaagtttgacactatcgatgacaaggttggagcc 164 |||||||||||||| ||| | || || |||||||| || || || |||||||| ||||| Sbjct: 1729 agactgatcgatggaatcttacttacaaagtttgataccattgacgacaaggtcggagca 1788 Query: 165 gcactgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcc 224 || |||| |||||||||||||| ||||| ||||| |||||||| || || || ||||| Sbjct: 1789 gcgttgtctatggtttacatatcgggatcaccggttatgttcgtgggttgtggccagtct 1848 Query: 225 tacactgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||||||||||||||||||| ||||| ||| |||| || ||||| Sbjct: 1849 tacactgacctgaagaagcttaatgtcaaagccatagtcaagac 1892
>gb|AY065066.1| Arabidopsis thaliana AT4g30600/F17I23_60 mRNA, complete cds Length = 2265 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Plus Query: 105 agactgatcgatggtatcctgctcaccaagtttgacactatcgatgacaaggttggagcc 164 |||||||||||||| ||| | || || |||||||| || || || |||||||| ||||| Sbjct: 1863 agactgatcgatggaatcttacttacaaagtttgataccattgacgacaaggtcggagca 1922 Query: 165 gcactgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcc 224 || |||| |||||||||||||| ||||| ||||| |||||||| || || || ||||| Sbjct: 1923 gcgttgtctatggtttacatatcgggatcaccggttatgttcgtgggttgtggccagtct 1982 Query: 225 tacactgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||||||||||||||||||| ||||| ||| |||| || ||||| Sbjct: 1983 tacactgacctgaagaagcttaatgtcaaagccatagtcaagac 2026
>gb|AC136953.17| Medicago truncatula clone mth2-20h6, complete sequence Length = 94019 Score = 93.7 bits (47), Expect = 5e-16 Identities = 98/115 (85%) Strand = Plus / Plus Query: 154 aggttggagccgcactgtccatggtttacatatctggatctccggtcatgttcgtcggat 213 |||| ||||| ||||| || |||||||||||||||||| |||| |||||||| || |||| Sbjct: 21023 aggtgggagctgcactttcaatggtttacatatctggagctccagtcatgtttgtgggat 21082 Query: 214 gcggtcagtcctacactgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||| |||||||| |||||||| ||||| || || || || ||||| |||||||| Sbjct: 21083 gcggacagtcctatactgacctcaagaaactcaacgtcaagtccattgtgaagac 21137 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 6 gtcttatttgtgggagaggcattggttgggaatgacgcagttgatcagct 55 ||||||||||| ||||| ||| ||||||| ||||| |||||||||||||| Sbjct: 20518 gtcttatttgttggagaagcactggttggcaatgatgcagttgatcagct 20567 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 109 tgatcgatggtatcctgctcaccaagtttgacactatcgatgacaaggt 157 |||| ||||| ||| ||||||| |||||||||||||| ||||| ||||| Sbjct: 20724 tgattgatgggatcttgctcacaaagtttgacactattgatgataaggt 20772
>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 Length = 194862 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 169 tgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcctaca 228 |||| |||||||||||||| ||||| ||||| |||||||| || || || ||||| |||| Sbjct: 83981 tgtctatggtttacatatcgggatcaccggttatgttcgtgggttgtggccagtcttaca 83922 Query: 229 ctgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||||||||||||||| ||||| ||| |||| || ||||| Sbjct: 83921 ctgacctgaagaagcttaatgtcaaagccatagtcaagac 83882
>gb|AF160182.1|F17I23 Arabidopsis thaliana BAC F17I23 Length = 134784 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 169 tgtccatggtttacatatctggatctccggtcatgttcgtcggatgcggtcagtcctaca 228 |||| |||||||||||||| ||||| ||||| |||||||| || || || ||||| |||| Sbjct: 17336 tgtctatggtttacatatcgggatcaccggttatgttcgtgggttgtggccagtcttaca 17395 Query: 229 ctgacctgaagaagctgaatgtgaaatccatcgtgaagac 268 |||||||||||||||| ||||| ||| |||| || ||||| Sbjct: 17396 ctgacctgaagaagcttaatgtcaaagccatagtcaagac 17435
>emb|AJ293426.1|BOL293426 Brassica oleracea partial mRNA for hypothetical protein, clone LSC815, differential screening experiment Length = 300 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Plus Query: 132 aagtttgacactatcgatgacaaggttggagccgcactgtccatggtttacatatctgga 191 |||||||| || || || || ||||||||||| ||| | || |||||||||||||| ||| Sbjct: 65 aagtttgataccattgacgataaggttggagcagcattatcgatggtttacatatcggga 124 Query: 192 tctccggtcatgttcgtcggatgcggtcagtcctacactgacctgaagaagctgaatgt 250 | ||||| |||||||| || || || ||||| |||||||||||||||||||| ||||| Sbjct: 125 gcaccggttatgttcgtgggttgtggccagtcttacactgacctgaagaagctcaatgt 183
>ref|XM_684658.1| PREDICTED: Danio rerio similar to signal recognition particle receptor (docking protein) (LOC561252), partial mRNA Length = 1125 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 126 ctcaccaagtttgacactatcgatgacaaggttggagc 163 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 70 ctcaccaagtttgacactattgatgacaaggtgggagc 107
>ref|XM_692426.1| PREDICTED: Danio rerio similar to signal recognition particle receptor (docking protein) (LOC569063), mRNA Length = 1587 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 126 ctcaccaagtttgacactatcgatgacaaggttggagc 163 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 532 ctcaccaagtttgacactattgatgacaaggtgggagc 569
>ref|XM_947200.1| Theileria annulata strain Ankara signal recognition particle receptor subunit alpha (TA13100) partial mRNA Length = 1644 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 147 gatgacaaggttggagccgcactgtccatggt 178 ||||||||||||||||||||||| |||||||| Sbjct: 1510 gatgacaaggttggagccgcactatccatggt 1541
>emb|AJ851760.1| Gallus gallus mRNA for hypothetical protein, clone 28a6 Length = 3102 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 124 tgctcaccaagtttgacactatcgatgacaaggt 157 |||||||||||||||| || |||||||||||||| Sbjct: 1812 tgctcaccaagtttgataccatcgatgacaaggt 1845
>ref|NM_001039277.1| Gallus gallus signal recognition particle receptor ('docking protein') (SRPR), mRNA Length = 3102 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 124 tgctcaccaagtttgacactatcgatgacaaggt 157 |||||||||||||||| || |||||||||||||| Sbjct: 1812 tgctcaccaagtttgataccatcgatgacaaggt 1845
>ref|XM_807117.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506407.60) partial mRNA Length = 591 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 355 cccatgacatcgttgtttttctcgtt 380 |||||||||||||| ||||||||||| Sbjct: 539 cccatgacatcgttctttttctcgtt 514
>ref|XM_792097.1| PREDICTED: Strongylocentrotus purpuratus similar to signal recognition particle receptor (docking protein) (LOC592583), partial mRNA Length = 1674 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 126 ctcaccaagtttgacactatcgatgacaag 155 ||||||||||||||||| || ||||||||| Sbjct: 1645 ctcaccaagtttgacaccattgatgacaag 1674
>emb|BX323058.5| Human DNA sequence from clone RP11-12C4 on chromosome 1 Contains part of a novel gene, complete sequence Length = 26982 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ctggtcttatttgtgggagag 23 ||||||||||||||||||||| Sbjct: 21375 ctggtcttatttgtgggagag 21395
>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 262797 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tgtgggagaggcattggttgg 34 ||||||||||||||||||||| Sbjct: 18564 tgtgggagaggcattggttgg 18544
>gb|AC124976.9| Mus musculus chromosome 3, clone RP24-84E6, complete sequence Length = 218027 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 74058 atttgtgggagaggcattgg 74039
>gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence Length = 10284 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atctttccactgttccaaca 101 |||||||||||||||||||| Sbjct: 3311 atctttccactgttccaaca 3330
>gb|AC162881.2| Echinops telfairi, clone Echinops telfairi -24528857A5, complete sequence Length = 39811 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 ttgctgtcaacttattctgctgtg 445 ||||||||| |||||||||||||| Sbjct: 4658 ttgctgtcatcttattctgctgtg 4635
>gb|AC147228.3| Mus musculus BAC clone RP23-159I8 from chromosome 5, complete sequence Length = 186527 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 143589 atttgtgggagaggcattgg 143608
>gb|DQ192032.1|DQ192032S1 Stizostedion vitreum vitreum putative calpain-like protein gene, exons 1 through 14 Length = 10677 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atctttccactgttccaaca 101 |||||||||||||||||||| Sbjct: 3311 atctttccactgttccaaca 3330
>gb|AC127432.1| Mus musculus BAC clone RP24-535L6 from 5, complete sequence Length = 151130 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 71084 atttgtgggagaggcattgg 71103
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caacaagttcaatcagaaat 75 |||||||||||||||||||| Sbjct: 4287793 caacaagttcaatcagaaat 4287774
>gb|AC159646.2| Mus musculus BAC clone RP23-192K23 from chromosome 12, complete sequence Length = 194901 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 13626 atttgtgggagaggcattgg 13607
>emb|AL845496.5| Mouse DNA sequence from clone RP23-245J21 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 143664 atttgtgggagaggcattgg 143683
>gb|AC148756.2| Medicago truncatula clone mth2-22d18, complete sequence Length = 107160 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttgtttttctcgtttggttt 386 |||||||||||||||||||| Sbjct: 41889 ttgtttttctcgtttggttt 41908
>emb|BX545854.10| Zebrafish DNA sequence from clone CH211-195N8 in linkage group 11, complete sequence Length = 190179 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ttggcagatctttccactgt 94 |||||||||||||||||||| Sbjct: 108670 ttggcagatctttccactgt 108689
>gb|AC129207.4| Mus musculus chromosome 5 clone RP24-280N5, complete sequence Length = 165994 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 18894 atttgtgggagaggcattgg 18913
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caacaagttcaatcagaaat 75 |||||||||||||||||||| Sbjct: 4402177 caacaagttcaatcagaaat 4402158
>gb|AC133079.4| Mus musculus BAC clone RP24-468O18 from 12, complete sequence Length = 176177 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttgtgggagaggcattgg 30 |||||||||||||||||||| Sbjct: 112008 atttgtgggagaggcattgg 112027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,549,871 Number of Sequences: 3902068 Number of extensions: 3549871 Number of successful extensions: 63929 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63797 Number of HSP's gapped (non-prelim): 132 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
