ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9o12 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 68.9 bits (167), Expect = 3e-12 Identities = 30/43 (69%), Positives = 34/43 (79%) Frame = +3 Query: 75 CAPAPXRWRRLKTAKSXRVFFDWKDYLKFYKMGTYWPYTPSIQ 203 CA +P KT+KS +VFFDW DYLKFYK+GTYWPYTPSIQ Sbjct: 213 CA-SPKALEATKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQ 254 Score = 60.8 bits (146), Expect = 9e-10 Identities = 30/33 (90%), Positives = 31/33 (93%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGIVCASPXALEAAQ 109 GVDVALTGSQKALSLPTGLGIVCASP ALEA + Sbjct: 191 GVDVALTGSQKALSLPTGLGIVCASPKALEATK 223
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 51.2 bits (121), Expect(2) = 4e-11 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGIVCASP 88 GVDVALTGSQKALS PTG+G+VCASP Sbjct: 51 GVDVALTGSQKALSFPTGMGLVCASP 76 Score = 34.3 bits (77), Expect(2) = 4e-11 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +3 Query: 120 SXRVFFDWKDYLKFYKMGTYWPYTPSI 200 S RVFFDWKDYL+ TYW Y ++ Sbjct: 75 SPRVFFDWKDYLR-----TYWHYDQAL 96
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 44.7 bits (104), Expect(2) = 5e-08 Identities = 22/37 (59%), Positives = 27/37 (72%) Frame = +2 Query: 14 VDVALTGSQKALSLPTGLGIVCASPXALEAAQDGQVG 124 VD A+ GSQK L LP GLG++C S AL+AA +GQ G Sbjct: 169 VDCAIAGSQKGLMLPAGLGVICVSQKALKAA-EGQSG 204 Score = 30.0 bits (66), Expect(2) = 5e-08 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +3 Query: 126 RVFFDWKDYLKFYKMGTYWPYTPSI 200 RV+FDW+D K G Y+PYTP + Sbjct: 211 RVYFDWEDQKKQNPTG-YFPYTPPL 234
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGIVCASPXALE 100 GVD ++GSQK LPTGLGI+ S AL+ Sbjct: 185 GVDCCVSGSQKGFMLPTGLGILAVSQKALD 214
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 36.6 bits (83), Expect = 0.018 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGIVCASPXALEA 103 G+DV +GSQK +P GLG V SP A EA Sbjct: 184 GLDVVASGSQKGYMIPPGLGFVSVSPKAWEA 214
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 32.0 bits (71), Expect(2) = 0.020 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +2 Query: 14 VDVALTGSQKALSLPTGLGIVCASPXALEAAQ--DGQVG 124 +D+ +TGSQK L+ P GL + S A E + D +VG Sbjct: 185 IDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVG 223 Score = 23.5 bits (49), Expect(2) = 0.020 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +3 Query: 132 FFDWKDYLKFYKMGTYWPYTPSI 200 + D Y K+Y+ PYTPS+ Sbjct: 225 YLDLLAYKKYYEEKKQTPYTPSV 247
>AGX1_YEAST (P43567) Alanine--glyoxylate aminotransferase 1 (EC 2.6.1.44)| Length = 385 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 4/41 (9%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGI-VCAS---PXALEAAQDGQV 121 GVD ALT SQKA+ P GL I +C+S AL +++G V Sbjct: 191 GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHV 231
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 33.1 bits (74), Expect = 0.20 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 11 GVDVALTGSQKALSLPTGLGIVCASPXALEA 103 G+DV +GSQK +P GL V SP A EA Sbjct: 184 GLDVVGSGSQKGYMIPPGLAFVSVSPKAWEA 214
>SGAT_WHEAT (P84188) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 78 Score = 31.2 bits (69), Expect = 0.78 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 105 LKTAKSXRVFFDWKDYLK 158 +K + RVFFDWKDYLK Sbjct: 37 IKLLDAYRVFFDWKDYLK 54
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIVCASPXA 94 +G+DV +GSQKAL+ P G ++ S A Sbjct: 198 QGIDVLYSGSQKALNAPPGTSLISFSDKA 226
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 30.0 bits (66), Expect = 1.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIVCASPXA 94 +G+D+ +GSQKAL+ P G ++ S A Sbjct: 198 QGIDILYSGSQKALNAPPGTSLISFSDKA 226
>HLY1_AERHY (P55870) Hemolysin ahh1 precursor| Length = 577 Score = 30.0 bits (66), Expect = 1.7 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +2 Query: 35 SQKALSLPTGLGIVCASPXALEAAQDGQVGARXLRLEGLPQVLQDGHLLA 184 S + S PT I + A + Q+GAR +R +P +LQDGH+ A Sbjct: 302 SASSASSPTTPRITGLNAPAERPEGEFQLGARSIRDRRVPALLQDGHVWA 351
>P3A2_STRPU (Q04073) DNA-binding protein P3A2| Length = 459 Score = 29.3 bits (64), Expect = 2.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIVCASPXALEAAQDG 115 +G D LT Q +LP G +V AS +L+A DG Sbjct: 353 QGGDGELTEGQTVTTLPEGTQLVLASDGSLQAINDG 388
>GCX1_RAT (Q76IQ7) Granulosa cell HMG box protein 1 (GCX-1)| Length = 473 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -3 Query: 87 GLAHTIPSPVGSDSAFCDPVSAT 19 G+AH+ PSP GS SA P S+T Sbjct: 143 GIAHSSPSPPGSKSATPSPSSST 165
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 28.5 bits (62), Expect = 5.0 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIV 76 +G+D+ +GSQK L+ P G+ ++ Sbjct: 220 QGIDILYSGSQKVLNAPPGISLI 242
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIVCASPXA 94 +G+DV +GSQK L+ P G ++ S A Sbjct: 220 QGIDVLYSGSQKVLNSPPGTSLISFSDKA 248
>BCHE_RHOS4 (Q9RFD3) Anaerobic magnesium-protoporphyrin IX monomethyl ester| [oxidative] cyclase (EC 1.14.13.-) (Anaerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase) Length = 612 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 117 KSXRVFFDWKDYLKFYKMGTYWPYTPSIQ 203 ++ R+ +DW+ L + M T WP+TP Q Sbjct: 359 ETYRMAWDWQPDLANWSMYTPWPFTPLFQ 387
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 8 EGVDVALTGSQKALSLPTGLGIVCASPXA 94 +G+D+ +GSQK L+ P G ++ S A Sbjct: 220 QGIDILYSGSQKVLNAPPGTSLLSFSDTA 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,721,258 Number of Sequences: 219361 Number of extensions: 259722 Number of successful extensions: 621 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 608 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 621 length of database: 80,573,946 effective HSP length: 43 effective length of database: 71,141,423 effective search space used: 1707394152 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
