>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
           protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +3

Query: 3   EIPGASPDHHMMSPTGNISRRAPFPY-VNHSPNXXREFSGSIGNVAWKERVDGWKMKQDK 179
           E   ASP+   +S T    +R P+   VN SPN        +GNVAWKERVDGWKMKQ+K
Sbjct: 146 EFSAASPERLSVSSTIAGGKRLPYSSDVNQSPNRRIVDPVGLGNVAWKERVDGWKMKQEK 205

Query: 180 GAIPMTNGTSIAPSEGRAATDIDASTEYNMEDALLNDE 293
              P+    S   +  R   DIDAST+   ++ALLNDE
Sbjct: 206 NTGPV----STQAASERGGVDIDASTDILADEALLNDE 239

>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
           (AtRSW1)
          Length = 1081

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 26/62 (41%), Positives = 34/62 (54%)
 Frame = +3

Query: 12  GASPDHHMMSPTGNISRRAPFPYVNHSPNXXREFSGSIGNVAWKERVDGWKMKQDKGAIP 191
           G S  + + SP   I  R P P     P+      G +GNV WKERV+GWK+KQ+K  + 
Sbjct: 171 GPSDRNAISSPY--IDPRQPVPVRIVDPSKDLNSYG-LGNVDWKERVEGWKLKQEKNMLQ 227

Query: 192 MT 197
           MT
Sbjct: 228 MT 229

>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 129 NVAWKERVDGWKMKQDKGAIPMT 197
           NV WK+R+ GWK+KQDK  I MT
Sbjct: 194 NVDWKKRIQGWKLKQDKNMIHMT 216

>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-8) (Irregular xylem protein 1)
           (AtIRX1)
          Length = 985

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 108 EFSGSIGNVAWKERVDGWKMKQDKGAIPMTNGTSIAPSEGRAATDIDASTEYNMEDALLN 287
           E +   GN  WK RV+ WK K+DK +           +E   A      T+ +MED   N
Sbjct: 104 ELNDEYGNPIWKNRVESWKDKKDKKSKKKKKDPKATKAEQHEA---QIPTQQHMEDTPPN 160

Query: 288 DET 296
            E+
Sbjct: 161 TES 163

>HFW1_DROPS (P84329) Protein halfway (Protein singed wings)|
          Length = 587

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -3

Query: 254 RCIDVSSCPTFRGSNACAISHGNCTLVLLHFPAINSLFPSNIP-NTARELPXRIW 93
           R ID+S+ P FR   + A++ GN T ++  FP  ++L   NI  N   E+P R++
Sbjct: 211 RTIDLSN-PIFRSLQSLAVTDGNITRLINAFPRHSALKCLNISNNNISEIPSRMF 264

>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
           (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 126 GNVAWKERVDGWKMKQDK 179
           G+VAWK+R++ WK KQ++
Sbjct: 213 GSVAWKDRMEEWKRKQNE 230

>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-5)
          Length = 1069

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 126 GNVAWKERVDGWKMKQDK 179
           G+VAWK+R++ WK KQ++
Sbjct: 201 GSVAWKDRMEEWKRKQNE 218

>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp|
          Length = 657

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 15  ASPDHHMMSPTGNISRRAPFPYVNHSPNXXREFSGSIGNVAWKERVDGWKMKQDKGAIPM 194
           ASP++  ++P+ N           H PN  ++      N+      D           P+
Sbjct: 443 ASPNYAAVTPSENSINVKQHASNGHMPNQQQQHVAGGSNIGKIADYD-----------PL 491

Query: 195 TNGTSIAPSEGRAATDIDASTE 260
           T+G  + P+ GR++T +  S+E
Sbjct: 492 TDGPRVVPNAGRSSTTLVYSSE 513

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 138 WKERVDGWKMKQDK 179
           WKERVD WK +Q+K
Sbjct: 157 WKERVDKWKARQEK 170

>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
 Frame = +3

Query: 18  SPDHHMMSP--TGNISRRAPFPYVNHS-PNXXREF-------SGSIGNVAWKERVDGWKM 167
           S  H ++ P  TG  +R  P P+ + S P   R             G+VAWK+R++ WK 
Sbjct: 162 SDRHALIVPPSTGYGNRVYPAPFTDSSAPPQARSMVPQKDIAEYGYGSVAWKDRMEVWKR 221

Query: 168 KQ 173
           +Q
Sbjct: 222 RQ 223

>GLPK_YEAST (P32190) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase) (Glycerokinase) (GK)
          Length = 709

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 WQYWECCLERES*WLENEAGQ 178
           W+YWE  +ER   WL++  G+
Sbjct: 680 WKYWEVAVERSKGWLKDIEGE 700

>TFEB_MOUSE (Q9R210) Transcription factor EB|
          Length = 475

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 9   PGASPDHHMMSPTGNISRRAPFPYVNHSPNXXREFSGSIGNVAWKERVDGW 161
           PG    H + +  GN +  +P   ++ S N  +EF   I N+   + V G+
Sbjct: 122 PGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDVIDNIMRLDSVLGY 172

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 236 SCPTFRGSNACAISHGNCTLVLLHFPAINSLFPSNIPN 123
           S P FR   + A++ GN T ++  FP +++L   NI N
Sbjct: 230 SNPIFRSLQSLAVTDGNITRLVNAFPRLSALKCLNISN 267

>SECA2_MYCTU (P66785) Preprotein translocase secA 2 subunit|
          Length = 808

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 GTSIAPSEGRAATDIDASTEYNMEDALLNDE 293
           G S   +  R+  D+ AS EY+ E A L+DE
Sbjct: 51  GASTEKNRSRSLADVTASAEYDKEAADLSDE 81

>SECA2_MYCBO (P66786) Preprotein translocase secA 2 subunit|
          Length = 808

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 GTSIAPSEGRAATDIDASTEYNMEDALLNDE 293
           G S   +  R+  D+ AS EY+ E A L+DE
Sbjct: 51  GASTEKNRSRSLADVTASAEYDKEAADLSDE 81

>KCNB2_RAT (Q63099) Potassium voltage-gated channel subfamily B member 2|
           (Voltage-gated potassium channel subunit Kv2.2) (CDRK)
          Length = 907

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +3

Query: 6   IPGASPDHHMMSPTGNISRRAP----FPYVNHSPNXXREFSGSIGNVAWKERVDGWKMKQ 173
           +PGA    H   P+  +S R P    FP+   S    R F+  I     ++ +D  + + 
Sbjct: 764 LPGADVSAHCQGPSKGLSPRVPKQKLFPF---SSRERRSFT-EIDTGEDEDFLDLQRPRP 819

Query: 174 DKGAIPMTNGTSIAPSEGR 230
           DK A P  N  +  P E R
Sbjct: 820 DKQADPSPNCLADKPGEAR 838

>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)|
           (Scaffold attachment factor A) (SAF-A) (p120) (pp120)
          Length = 824

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 88  IHQXRXGSSLAVLGMLLGKRELMAG 162
           IH+ R G SL   GMLLG+ E   G
Sbjct: 355 IHEVRIGWSLTTSGMLLGEEEFSYG 379

>EF2_CRYPV (Q23716) Elongation factor 2 (EF-2)|
          Length = 832

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 274 SSMLYSVDASMSVAARPSEGAMLVPLVMGIAPLS 173
           +SM YSV   + VA RP +   L  LV G+  LS
Sbjct: 469 ASMKYSVSPVVRVAVRPKDNKELPKLVEGLKKLS 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,543,580
Number of Sequences: 219361
Number of extensions: 813280
Number of successful extensions: 1905
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)