ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9o08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY483150.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA1) mRNA, complete cds Length = 3605 Score = 565 bits (285), Expect = e-158 Identities = 294/298 (98%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 595 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 596 gacgtgctccgttcccctatgtgaatcattcaccaaatccgtcaagggagttctctggca 655 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 715 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 775 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 833
>gb|BT009438.1| Triticum aestivum clone wlmk4.pk0015.a11:fis, full insert mRNA sequence Length = 3626 Score = 502 bits (253), Expect = e-139 Identities = 286/298 (95%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct: 535 gagaaatccctggagcttcgcctgatcatcacatgatgtcccctacggggaacatcagca 594 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 ||||||||||||| ||||| |||||||||||||||||| || |||||||||||| |||| Sbjct: 595 gacgtgctccgtttccctatgtgaatcattcaccaaatccgtcaagggagttctccggca 654 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 gtattgggaatgttgcctggaaagagagagttgatggctggaaaatgaagcaggacaagg 714 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 715 gtgcgattcccatgactaatgggacaagcattgctccctctgaaggtcgggcagctactg 774 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 775 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 832
>dbj|AB158407.1| Triticum aestivum CesA mRNA for putative cellulose synthase, complete cds Length = 3681 Score = 502 bits (253), Expect = e-139 Identities = 286/298 (95%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 561 gagaaatccctggagcttcccctgatcatcatatgatgtctcctacagggaacatcagca 620 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||||||||| || ||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 621 gacgtgctccctttccctatgtgaatcattcaccaaatccgtcaagggagttctctggca 680 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 681 gtattgggaatgttgcctggaaagagagagtcgatggctggaaaatgaagcaggacaagg 740 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 741 gtgcaattcccatgactaatgggacaagtattgctccctctgaaggtcgggcagctactg 800 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 858
>gb|DQ020211.1| Bambusa oldhamii cellulose synthase BoCesA4a mRNA, complete cds Length = 3756 Score = 347 bits (175), Expect = 1e-92 Identities = 265/296 (89%) Strand = Plus / Plus Query: 3 gaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagcaga 62 ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 774 gaaattcctggagcctcccctgatcatcatatgatgtcccctaccgggaacattggcaag 833 Query: 63 cgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggcagt 122 |||| ||| || ||||| || |||||||||||||| || ||||||||||||||| || Sbjct: 834 cgtgttccatttccctatgttaatcattcaccaaacccgtcaagggagttctctggtagc 893 Query: 123 attgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagggt 182 ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 894 attggtaatgttgcctggaaagaaagagttgatggctggaaaatgaagcaggataagggt 953 Query: 183 gcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactgac 242 ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct: 954 gcaattcccatgactaatggcacaagcattgctccctctgaaggtcggggagttggtgac 1013 Query: 243 atcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 || |||||||| ||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 1014 attgatgcatcaactgattacaacatggatgatgctttactgaatgatgaaactcg 1069
>gb|U48693.1|TAU48693 Triticum aestivum calmodulin TaCaM3-1 mRNA, complete cds Length = 1529 Score = 339 bits (171), Expect = 3e-90 Identities = 183/187 (97%) Strand = Plus / Minus Query: 112 tctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagc 171 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 757 tctctggcagtattgggaatgttgcctggaaagagagagtcgatggctggaaaatgaagc 698 Query: 172 aggacaagggtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcggg 231 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 697 aggacaagggtgcaattcccatgactaatgggacaagtattgctccctctgaaggtcggg 638 Query: 232 cagctactgacatcgatgcatctactgaatacaacatggaagacgctttactgaatgatg 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 cagctactgacatcgatgcatctactgaatacaacatggaagacgctttactgaatgatg 578 Query: 292 aaactcg 298 ||||||| Sbjct: 577 aaactcg 571
>gb|DQ020212.1| Bambusa oldhamii cellulose synthase BoCesA4b mRNA, partial cds Length = 3409 Score = 335 bits (169), Expect = 5e-89 Identities = 265/298 (88%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 434 gagaaattcctggagcctcccctgatcatcatatgatgtcccctactgggaacattggca 493 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||| ||| || ||||| ||||||||||| ||||| || ||||||||||||||| | Sbjct: 494 agcgtgttccatttccctatgtgaatcattcgccaaacccgtcaagggagttctctggta 553 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 554 gcattggtaatgttgcctggaaagaaagagttgatggctggaaaatgaagcaggataagg 613 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 614 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcggggagttggtg 673 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | || ||||||||||| || ||||||||||| || || ||| |||||||||||||||| Sbjct: 674 atattgatgcatctaccgattacaacatggatgatgccttattgaatgatgaaactcg 731
>ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3954 Score = 319 bits (161), Expect = 3e-84 Identities = 263/298 (88%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 912 gagaaatccctggagcttcccctgatcatcatatgatgtctcctaccggaaacattggca 971 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||||||| |||||||| ||||| |||||||||||| | ||||||||||||||||| Sbjct: 972 agcgtgctccattcccctatgtgaaccattcaccaaatccatcaagggagttctctggca 1031 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | ||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1032 gcattggaaatgttgcctggaaagaaagagttgatggctggaaactgaagcaggacaagg 1091 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | |||||||||||||| || || ||||||||||| || ||||||||||||| || | || Sbjct: 1092 gagcaattcccatgaccaacgggacaagcattgccccttctgaaggtcggggagttggtg 1151 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||| Sbjct: 1152 atatcgatgcatccactgattacaatatggaagatgccttactgaatgatgaaactcg 1209
>dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059I02, full insert sequence Length = 3954 Score = 319 bits (161), Expect = 3e-84 Identities = 263/298 (88%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 912 gagaaatccctggagcttcccctgatcatcatatgatgtctcctaccggaaacattggca 971 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||||||| |||||||| ||||| |||||||||||| | ||||||||||||||||| Sbjct: 972 agcgtgctccattcccctatgtgaaccattcaccaaatccatcaagggagttctctggca 1031 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | ||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1032 gcattggaaatgttgcctggaaagaaagagttgatggctggaaactgaagcaggacaagg 1091 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | |||||||||||||| || || ||||||||||| || ||||||||||||| || | || Sbjct: 1092 gagcaattcccatgaccaacgggacaagcattgccccttctgaaggtcggggagttggtg 1151 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||| Sbjct: 1152 atatcgatgcatccactgattacaatatggaagatgccttactgaatgatgaaactcg 1209
>gb|AF200528.1|AF200528 Zea mays cellulose synthase-4 (CesA-4) mRNA, complete cds Length = 3745 Score = 295 bits (149), Expect = 4e-77 Identities = 260/298 (87%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 789 gagaaatccctggtgcttcccctgaccatcatatgatgtccccaactgggaacattggca 848 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||||||| || ||||| ||||| ||||| |||||| || ||||||||||||||| | Sbjct: 849 agcgtgctccatttccctatgtgaaccattcgccaaatccgtcaagggagttctctggta 908 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 909 gcattgggaatgttgcctggaaagagagggttgatggctggaaaatgaagcaggacaagg 968 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | | ||||||||||| |||||||||||||||||||||||||| ||||||| | | || Sbjct: 969 ggacgattcccatgacgaatggcacaagcattgctccctctgagggtcggggtgttggtg 1028 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | || |||||||| ||||| |||||||||||||| || ||| |||| || |||||||| Sbjct: 1029 atattgatgcatcaactgattacaacatggaagatgccttattgaacgacgaaactcg 1086
>gb|AY108113.1| Zea mays PCO126465 mRNA sequence Length = 3763 Score = 295 bits (149), Expect = 4e-77 Identities = 260/298 (87%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 807 gagaaatccctggtgcttcccctgaccatcatatgatgtccccaactgggaacattggca 866 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 |||||||| || ||||| ||||| ||||| |||||| || ||||||||||||||| | Sbjct: 867 agcgtgctccatttccctatgtgaaccattcgccaaatccgtcaagggagttctctggta 926 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 927 gcattgggaatgttgcctggaaagagagggttgatggctggaaaatgaagcaggacaagg 986 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | | ||||||||||| |||||||||||||||||||||||||| ||||||| | | || Sbjct: 987 ggacgattcccatgacgaatggcacaagcattgctccctctgagggtcggggtgttggtg 1046 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | || |||||||| ||||| |||||||||||||| || ||| |||| || |||||||| Sbjct: 1047 atattgatgcatcaactgattacaacatggaagatgccttattgaacgacgaaactcg 1104
>gb|AF200533.1|AF200533 Zea mays cellulose synthase-9 (CesA-9) mRNA, complete cds Length = 3795 Score = 264 bits (133), Expect = 1e-67 Identities = 256/298 (85%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 713 gagaaatccctggtgcttcccctgaccatcatatgatgtctcctactgggaacattggca 772 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 | || || || || ||||| ||||||||||| ||||| || ||||| |||||||| | Sbjct: 773 ggcgcgccccatttccctatatgaatcattcatcaaatccgtcgagggaattctctggta 832 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 833 gcgttgggaatgttgcctggaaagagagggttgatggctggaaaatgaagcaggacaagg 892 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | ||||||||||||| |||||||||||||||||||||||||| || |||| | | || Sbjct: 893 gaacaattcccatgacgaatggcacaagcattgctccctctgagggccggggtgttggtg 952 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | || |||||||| ||||| |||||||||||||| || ||| | || ||||||||||| Sbjct: 953 atattgatgcatcaactgattacaacatggaagatgccttattaaacgatgaaactcg 1010
>gb|AY112236.1| Zea mays CL1160_1 mRNA sequence Length = 3728 Score = 264 bits (133), Expect = 1e-67 Identities = 256/298 (85%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 713 gagaaatccctggtgcttcccctgaccatcatatgatgtctcctactgggaacattggca 772 Query: 61 gacgtgctccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggca 120 | || || || || ||||| ||||||||||| ||||| || ||||| |||||||| | Sbjct: 773 ggcgcgccccatttccctatatgaatcattcatcaaatccgtcgagggaattctctggta 832 Query: 121 gtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaagg 180 | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 833 gcgttgggaatgttgcctggaaagagagggttgatggctggaaaatgaagcaggacaagg 892 Query: 181 gtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctactg 240 | ||||||||||||| |||||||||||||||||||||||||| || |||| | | || Sbjct: 893 gaacaattcccatgacgaatggcacaagcattgctccctctgagggccggggtgttggtg 952 Query: 241 acatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactcg 298 | || |||||||| ||||| |||||||||||||| || ||| | || ||||||||||| Sbjct: 953 atattgatgcatcaactgattacaacatggaagatgccttattaaacgatgaaactcg 1010
>gb|DQ020213.1| Bambusa oldhamii cellulose synthase BoCesA5 mRNA, complete cds Length = 3613 Score = 254 bits (128), Expect = 1e-64 Identities = 258/301 (85%), Gaps = 6/301 (1%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 ||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||| Sbjct: 687 gagaaattcctggagcttcccctgatcatt---tgatgtcccctgttgggaacattggca 743 Query: 61 gacgtgc---tccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctg 117 |||| |||||| ||||| ||||||||||| |||||| | |||||||||||| | Sbjct: 744 agcgtgggcatccgtttccctatgtgaatcattctccaaatccatcaagggagttctccg 803 Query: 118 gcagtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggaca 177 | || |||| |||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 804 gtagccttggcaatgttgcgtggaaagagagggttgatggctggaaaatgaagcaagaca 863 Query: 178 agggtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagcta 237 ||||||||||||||||||||||||| |||||||||||||| |||||||| || | | | Sbjct: 864 agggtgcaattcccatgactaatgggacaagcattgctccttctgaaggccgtggaattg 923 Query: 238 ctgacatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaactc 297 ||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct: 924 gtgatatcgatgcatctactgactataacatggaagatgctttactgaatgatgaaactc 983 Query: 298 g 298 | Sbjct: 984 g 984
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 192 bits (97), Expect = 4e-46 Identities = 160/181 (88%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 |||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 5889162 aagggagttctctggcagcattggaaatgttgcctggaaagaaagagttgatggctggaa 5889103 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 | |||||||||||||||| |||||||||||||| || || ||||||||||| || ||||| Sbjct: 5889102 actgaagcaggacaagggagcaattcccatgaccaacgggacaagcattgccccttctga 5889043 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||||| || | ||| ||||||||||| ||||| ||||| |||||||| || ||||| Sbjct: 5889042 aggtcggggagttggtgatatcgatgcatccactgattacaatatggaagatgccttact 5888983 Query: 284 g 284 | Sbjct: 5888982 g 5888982 Score = 105 bits (53), Expect = 8e-20 Identities = 83/93 (89%) Strand = Plus / Minus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 5889356 gagaaatccctggagcttcccctgatcatcatatgatgtctcctaccggaaacattggca 5889297 Query: 61 gacgtgctccgttcccctacgtgaatcattcac 93 |||||||| |||||||| ||||| ||||||| Sbjct: 5889296 agcgtgctccattcccctatgtgaaccattcac 5889264
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 192 bits (97), Expect = 4e-46 Identities = 160/181 (88%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 |||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 31610 aagggagttctctggcagcattggaaatgttgcctggaaagaaagagttgatggctggaa 31551 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 | |||||||||||||||| |||||||||||||| || || ||||||||||| || ||||| Sbjct: 31550 actgaagcaggacaagggagcaattcccatgaccaacgggacaagcattgccccttctga 31491 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||||| || | ||| ||||||||||| ||||| ||||| |||||||| || ||||| Sbjct: 31490 aggtcggggagttggtgatatcgatgcatccactgattacaatatggaagatgccttact 31431 Query: 284 g 284 | Sbjct: 31430 g 31430 Score = 105 bits (53), Expect = 8e-20 Identities = 83/93 (89%) Strand = Plus / Minus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 31804 gagaaatccctggagcttcccctgatcatcatatgatgtctcctaccggaaacattggca 31745 Query: 61 gacgtgctccgttcccctacgtgaatcattcac 93 |||||||| |||||||| ||||| ||||||| Sbjct: 31744 agcgtgctccattcccctatgtgaaccattcac 31712
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1559_F09 Length = 87792 Score = 192 bits (97), Expect = 4e-46 Identities = 160/181 (88%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 |||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 63836 aagggagttctctggcagcattggaaatgttgcctggaaagaaagagttgatggctggaa 63777 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 | |||||||||||||||| |||||||||||||| || || ||||||||||| || ||||| Sbjct: 63776 actgaagcaggacaagggagcaattcccatgaccaacgggacaagcattgccccttctga 63717 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||||| || | ||| ||||||||||| ||||| ||||| |||||||| || ||||| Sbjct: 63716 aggtcggggagttggtgatatcgatgcatccactgattacaatatggaagatgccttact 63657 Query: 284 g 284 | Sbjct: 63656 g 63656 Score = 105 bits (53), Expect = 8e-20 Identities = 83/93 (89%) Strand = Plus / Minus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagca 60 |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 64030 gagaaatccctggagcttcccctgatcatcatatgatgtctcctaccggaaacattggca 63971 Query: 61 gacgtgctccgttcccctacgtgaatcattcac 93 |||||||| |||||||| ||||| ||||||| Sbjct: 63970 agcgtgctccattcccctatgtgaaccattcac 63938
>ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3607 Score = 168 bits (85), Expect = 6e-39 Identities = 244/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Plus Query: 3 gaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagcaga 62 ||||| |||||||| |||||||||||| |||||||| || ||||||||| ||||| Sbjct: 845 gaaattcctggagcgtcccctgatcat---atgatgtctcccgttgggaacattggcaga 901 Query: 63 cgtgc---tccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggc 119 |||| ||| || ||||| ||||| ||||||||||| | ||||||||| ||||| Sbjct: 902 cgtgggcatccatttccctatgtgaaccattcaccaaacccatcaagggagttttctggt 961 Query: 120 agtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaag 179 || |||| |||||||| |||||||||||||| |||||||||||||||| |||| || Sbjct: 962 agccttggcaatgttgcatggaaagagagagtagatggctggaaaatga---aggataaa 1018 Query: 180 ggtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctact 239 ||||||||||||||| ||||||| || ||||||||||| || |||||||| | | | | Sbjct: 1019 ggtgcaattcccatggctaatggtactagcattgctccttcagaaggtcgtggggttggt 1078 Query: 240 gacatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaac 295 ||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 1079 gacattgatgcatctactgactataacatggaggacgccttactgaatgatgaaac 1134
>gb|AY483151.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA3) mRNA, partial cds Length = 3362 Score = 163 bits (82), Expect = 4e-37 Identities = 165/192 (85%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 ||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||| Sbjct: 525 aagggagttctctggtagccttggcaatgttgcgtggaaagagagagttgatggctggaa 584 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 ||||| | ||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct: 585 aatga---aagacaagggtgcaattcccatgactaatggaacaagcattgctccttccga 641 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 ||| || | | | ||| |||||||||| |||||| || |||||||||| | ||||| Sbjct: 642 aggccgtggaaatggtgatatcgatgcatgtactgactatggcatggaagaccccttact 701 Query: 284 gaatgatgaaac 295 |||||||||||| Sbjct: 702 gaatgatgaaac 713 Score = 46.1 bits (23), Expect = 0.063 Identities = 43/49 (87%), Gaps = 3/49 (6%) Strand = Plus / Plus Query: 1 gagaaatccctggagcttcccctgatcatcatatgatgtcccctactgg 49 ||||||| |||||||||||||| | ||||||||||||||||| |||| Sbjct: 422 gagaaattcctggagcttcccccg---atcatatgatgtcccctgctgg 467
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full insert sequence Length = 4282 Score = 161 bits (81), Expect = 2e-36 Identities = 243/296 (82%), Gaps = 9/296 (3%) Strand = Plus / Plus Query: 3 gaaatccctggagcttcccctgatcatcatatgatgtcccctactgggaacatcagcaga 62 ||||| |||||||| |||||||||||| |||||||| || ||||||||| ||||| Sbjct: 734 gaaattcctggagcgtcccctgatcat---atgatgtctcccgttgggaacattggcaga 790 Query: 63 cgtgc---tccgttcccctacgtgaatcattcaccaaatncgnnaagggagttctctggc 119 |||| ||| || ||||| ||||| ||||||||||| | ||||||||| ||||| Sbjct: 791 cgtgggcatccatttccctatgtgaaccattcaccaaacccatcaagggagttttctggt 850 Query: 120 agtattgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaag 179 || |||| |||||||| |||||||||||||| |||||||||||||||||| | || Sbjct: 851 agccttggcaatgttgcatggaaagagagagtagatggctggaaaatgaaggatgaa--- 907 Query: 180 ggtgcaattcccatgactaatggcacaagcattgctccctctgaaggtcgggcagctact 239 ||||||||||||||| ||||||| || ||||||||||| || |||||||| | | | | Sbjct: 908 ggtgcaattcccatggctaatggtactagcattgctccttcagaaggtcgtggggttggt 967 Query: 240 gacatcgatgcatctactgaatacaacatggaagacgctttactgaatgatgaaac 295 ||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 968 gacattgatgcatctactgactataacatggaggacgccttactgaatgatgaaac 1023
>gb|AF200529.1|AF200529 Zea mays cellulose synthase-5 (CesA-5) mRNA, complete cds Length = 3676 Score = 135 bits (68), Expect = 9e-29 Identities = 163/194 (84%), Gaps = 3/194 (1%) Strand = Plus / Plus Query: 105 agggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaaa 164 ||||||||||| || || |||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 827 agggagttctccggtagccttggcaatgttgcatggaaagagagggtggatggatggaaa 886 Query: 165 atgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctgaa 224 |||||| || || ||||||||||| ||||| ||||| |||||||||||||| || ||| Sbjct: 887 atgaag---gataaaggtgcaattcctatgaccaatggaacaagcattgctccatcagaa 943 Query: 225 ggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttactg 284 || || | || | |||| || ||||| |||||||| || ||||||||||| || |||||| Sbjct: 944 gggcgtggagttgctgatattgatgcttctactgattataacatggaagatgccttactg 1003 Query: 285 aatgatgaaactcg 298 |||||||||||||| Sbjct: 1004 aatgatgaaactcg 1017 Score = 42.1 bits (21), Expect = 0.99 Identities = 41/47 (87%), Gaps = 3/47 (6%) Strand = Plus / Plus Query: 9 cctggagcttcccctgatcatcatatgatgtcccctactgggaacat 55 ||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct: 731 cctggagcttcccctgatcat---atgatgtctcctgttgggaacat 774
>gb|AY110079.1| Zea mays CL1164_1 mRNA sequence Length = 3696 Score = 135 bits (68), Expect = 9e-29 Identities = 163/194 (84%), Gaps = 3/194 (1%) Strand = Plus / Plus Query: 105 agggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaaa 164 ||||||||||| || || |||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 827 agggagttctccggtagccttggcaatgttgcatggaaagagagggtggatggatggaaa 886 Query: 165 atgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctgaa 224 |||||| || || ||||||||||| ||||| ||||| |||||||||||||| || ||| Sbjct: 887 atgaag---gataaaggtgcaattcctatgaccaatggaacaagcattgctccatcagaa 943 Query: 225 ggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttactg 284 || || | || | |||| || ||||| |||||||| || ||||||||||| || |||||| Sbjct: 944 gggcgtggagttgctgatattgatgcttctactgattataacatggaagatgccttactg 1003 Query: 285 aatgatgaaactcg 298 |||||||||||||| Sbjct: 1004 aatgatgaaactcg 1017 Score = 42.1 bits (21), Expect = 0.99 Identities = 41/47 (87%), Gaps = 3/47 (6%) Strand = Plus / Plus Query: 9 cctggagcttcccctgatcatcatatgatgtcccctactgggaacat 55 ||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct: 731 cctggagcttcccctgatcat---atgatgtctcctgttgggaacat 774
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 4e-28 Identities = 153/181 (84%), Gaps = 3/181 (1%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 ||||||||| ||||| || |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 33480858 aagggagttttctggtagccttggcaatgttgcatggaaagagagagtagatggctggaa 33480799 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 ||||| |||| || ||||||||||||||| ||||||| || ||||||||||| || || Sbjct: 33480798 aatga---aggataaaggtgcaattcccatggctaatggtactagcattgctccttcaga 33480742 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||| | | | |||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct: 33480741 aggtcgtggggttggtgacattgatgcatctactgactataacatggaggacgccttact 33480682 Query: 284 g 284 | Sbjct: 33480681 g 33480681
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete sequence Length = 41693 Score = 133 bits (67), Expect = 4e-28 Identities = 153/181 (84%), Gaps = 3/181 (1%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 ||||||||| ||||| || |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 10085 aagggagttttctggtagccttggcaatgttgcatggaaagagagagtagatggctggaa 10026 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 ||||| |||| || ||||||||||||||| ||||||| || ||||||||||| || || Sbjct: 10025 aatga---aggataaaggtgcaattcccatggctaatggtactagcattgctccttcaga 9969 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||| | | | |||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct: 9968 aggtcgtggggttggtgacattgatgcatctactgactataacatggaggacgccttact 9909 Query: 284 g 284 | Sbjct: 9908 g 9908
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 133 bits (67), Expect = 4e-28 Identities = 153/181 (84%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 ||||||||| ||||| || |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 17253 aagggagttttctggtagccttggcaatgttgcatggaaagagagagtagatggctggaa 17312 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 ||||| |||| || ||||||||||||||| ||||||| || ||||||||||| || || Sbjct: 17313 aatga---aggataaaggtgcaattcccatggctaatggtactagcattgctccttcaga 17369 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||| | | | |||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct: 17370 aggtcgtggggttggtgacattgatgcatctactgactataacatggaggacgccttact 17429 Query: 284 g 284 | Sbjct: 17430 g 17430
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 4e-28 Identities = 153/181 (84%), Gaps = 3/181 (1%) Strand = Plus / Minus Query: 104 aagggagttctctggcagtattgggaatgttgcttggaaagagagagttgatggctggaa 163 ||||||||| ||||| || |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 33571368 aagggagttttctggtagccttggcaatgttgcatggaaagagagagtagatggctggaa 33571309 Query: 164 aatgaagcaggacaagggtgcaattcccatgactaatggcacaagcattgctccctctga 223 ||||| |||| || ||||||||||||||| ||||||| || ||||||||||| || || Sbjct: 33571308 aatga---aggataaaggtgcaattcccatggctaatggtactagcattgctccttcaga 33571252 Query: 224 aggtcgggcagctactgacatcgatgcatctactgaatacaacatggaagacgctttact 283 |||||| | | | |||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct: 33571251 aggtcgtggggttggtgacattgatgcatctactgactataacatggaggacgccttact 33571192 Query: 284 g 284 | Sbjct: 33571191 g 33571191
>gb|AY221087.1| Solanum tuberosum cellulose synthase (StCesA3) mRNA, complete cds Length = 3997 Score = 89.7 bits (45), Expect = 5e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 123 attgggaatgttgcttggaaagagagagttgatggctggaaaatgaagcagga 175 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 938 attggcaatgttgcttggaaagaaagagttgatggctggaaaatgaagcagga 990
>ref|NM_120599.2| Arabidopsis thaliana CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups AT5G05170 (CESA3) mRNA, complete cds Length = 3607 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 126 gggaatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 744 gggaatgtagcttggaaggagagagttgatggctggaaaatgaagca 790
>gb|BT002335.1| Arabidopsis thaliana clone C104938 putative cellulose synthase catalytic subunit (At5g05170) mRNA, complete cds Length = 3229 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 126 gggaatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 562 gggaatgtagcttggaaggagagagttgatggctggaaaatgaagca 608
>dbj|AB018111.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A11 Length = 29292 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 126 gggaatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 14632 gggaatgtagcttggaaggagagagttgatggctggaaaatgaagca 14586
>gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synthase catalytic subunit (Ath-B) mRNA, complete cds Length = 3682 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 126 gggaatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 817 gggaatgtagcttggaaggagagagttgatggctggaaaatgaagca 863
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete sequence Length = 133910 Score = 71.9 bits (36), Expect = 1e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 129 aatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 123631 aatgtagcttggaaagaaagagttgatggctggaaaatgaagca 123674
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence Length = 120017 Score = 71.9 bits (36), Expect = 1e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 129 aatgttgcttggaaagagagagttgatggctggaaaatgaagca 172 ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 87653 aatgtagcttggaaagaaagagttgatggctggaaaatgaagca 87696
>gb|DQ014508.1| Eucalyptus grandis cellulose synthase 4 (CesA4) mRNA, complete cds Length = 3782 Score = 65.9 bits (33), Expect = 7e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 132 gttgcttggaaagagagagttgatggctggaaaatgaagca 172 ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 788 gttgcctggaaggagagagttgatggctggaaaatgaagca 828
>gb|AY310771.1| Nicotiana benthamiana clone 8-131 unknown mRNA Length = 103 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 136 cttggaaagagagagttgatggctggaaaatgaagcagga 175 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 87 cttggaaagaaagagttgatggctggaagatgaagcagga 48
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds Length = 3532 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 129 aatgttgcttggaaagagagagttgatggctggaaaatgaagcaggacaag 179 ||||| || ||||| || ||||||||||||||||| ||||||||||||||| Sbjct: 833 aatgtggcctggaaggaaagagttgatggctggaagatgaagcaggacaag 883
>gb|AF150630.2|AF150630 Gossypium hirsutum cellulose synthase catalytic subunit (celA3) mRNA, complete cds Length = 3723 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 129 aatgttgcttggaaagagagagttgatggctggaaaatgaagcagga 175 ||||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct: 833 aatgtagcctggaaggagagagttgatggctggaagatgaagcagga 879
>gb|AY643520.1| Acacia mangium CesA2 mRNA, complete cds Length = 3643 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 129 aatgttgcttggaaagagagagttgatggctggaaaatgaagcagga 175 ||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct: 852 aatgtagcttggaaagaaagggttgatggttggaagatgaagcagga 898
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds Length = 3603 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Plus Query: 124 ttgggaatgttgcttggaaagagagagt 151 |||| ||||||||||||||||||||||| Sbjct: 560 ttggaaatgttgcttggaaagagagagt 587
>gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, complete sequence Length = 171025 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 ttgatggctggaaaatgaagc 171 ||||||||||||||||||||| Sbjct: 10015 ttgatggctggaaaatgaagc 10035
>gb|AC010477.8| Homo sapiens chromosome 5 clone CTD-2313D3, complete sequence Length = 130888 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 ttgatggctggaaaatgaagc 171 ||||||||||||||||||||| Sbjct: 60104 ttgatggctggaaaatgaagc 60124
>gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, complete sequence Length = 187158 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 agagagagttgatggctgga 162 |||||||||||||||||||| Sbjct: 16116 agagagagttgatggctgga 16097
>gb|AC124669.8| Mus musculus chromosome 1, clone RP23-110B5, complete sequence Length = 201456 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 agagagagttgatggctgga 162 |||||||||||||||||||| Sbjct: 11087 agagagagttgatggctgga 11106
>ref|XM_802694.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503841.60) partial mRNA Length = 1968 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aatccctggagcttcccctg 24 |||||||||||||||||||| Sbjct: 1212 aatccctggagcttcccctg 1193
>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14 Contains the 3' end of the gene for a protein related to the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a novel gene and a CpG island, complete sequence Length = 171026 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ctttactgaatgatgaaact 296 |||||||||||||||||||| Sbjct: 100756 ctttactgaatgatgaaact 100737
>emb|AL357992.14| Human DNA sequence from clone RP11-162J8 on chromosome 6 Contains the 3' end of the UST gene for uronyl-2-sulfotransferase and two novel genes, complete sequence Length = 155030 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 aagcaggacaagggtgcaat 187 |||||||||||||||||||| Sbjct: 19906 aagcaggacaagggtgcaat 19887 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,610,466 Number of Sequences: 3902068 Number of extensions: 2610466 Number of successful extensions: 39732 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39606 Number of HSP's gapped (non-prelim): 103 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
