>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1|
          Length = 145

 Score = 96.7 bits (239), Expect = 4e-20
 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
 Frame = +2

Query: 59  KLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKL 238
           KLM+G+LFS+RSF +K+ P   +               F SF+T+ YKL+Y E+P+GIK+
Sbjct: 36  KLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKV 82

Query: 239 ILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 400
           ++ T    G  RD L HIYS LYVE+VVKNPL   G  ++ +LF   LD YV++L
Sbjct: 83  VMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5|
           homolog) (Multiple myeloma protein 2) (MUM-2)
          Length = 145

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
 Frame = +2

Query: 59  KLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKL 238
           KLM+G+LFS+RSF +K+ P   +               F +F+T+ YKL+Y E+P+GIK+
Sbjct: 36  KLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKV 82

Query: 239 ILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 400
           ++ T    G  RD L HIYS LYVE VVKNPL   G  ++ +LF   LD YV++L
Sbjct: 83  VMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5|
          Length = 155

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
 Frame = +2

Query: 56  QKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIK 235
           +KL+FG++FSLR+   KI     +               F S+ T+ YKL++ E+P+ ++
Sbjct: 46  EKLIFGVVFSLRNMVKKITADQDQ---------------FMSYTTSKYKLHFYETPTNLR 90

Query: 236 LILLTHPRTGDQRDALKHIY-SLYVEYVVKNPLYAPGSP------IKCDLFNKHLDQYVK 394
           LI +T+P+       L+ IY +LYVE+VVK+PLY    P      I C++F   LD++V+
Sbjct: 91  LIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVR 150

Query: 395 TL 400
           TL
Sbjct: 151 TL 152

>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog)
          Length = 219

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +2

Query: 137 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 313
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 314 VVKNPLYAPGSPIKCDLFNKHL 379
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog) (Hematopoietic stem/progenitor cell
           protein 172)
          Length = 219

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +2

Query: 137 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 313
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 314 VVKNPLYAPGSPIKCDLFNKHL 379
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>BET5_YEAST (Q03630) Transport protein particle 18 kDa subunit (TRAPP 18 kDa|
           subunit)
          Length = 159

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +2

Query: 59  KLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKL 238
           KL++G++FSLRS T K+   S ++                S  T  Y+++   + SG+  
Sbjct: 42  KLLYGMIFSLRSITQKLSKGSVKN-------------DIRSISTGKYRVHTYCTASGLWF 88

Query: 239 ILLTHPRTGDQRDALKHIYS-LYVEYVVKNPL 331
           +LL+  +       L++IYS +YV+YV  N L
Sbjct: 89  VLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLL 120

>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa|
           subunit)
          Length = 219

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +2

Query: 281 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 400
           L+ +Y LY +YV+K+P Y+   PI+ +LF++ + + V+ L
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)|
          Length = 140

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 185 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 352
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121

Query: 353 KCDLFNK 373
           +   F++
Sbjct: 122 RSSAFDR 128

>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)|
           (MBP-1-interacting protein 2A) (MIP-2A)
          Length = 140

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 185 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 352
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121

Query: 353 KCDLFNK 373
           +   F++
Sbjct: 122 RSSAFDR 128

>KAIC_PROMP (Q7V0C4) Circadian clock protein kinase kaiC (EC 2.7.11.1)|
          Length = 509

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 7   TRASGTGPPHARSQPVPEAYVRTPLLPALIYRQDRPHLNRTRQSWG 144
           T A+GTG     S+ + +AY          Y + R  LNR   SWG
Sbjct: 283 TGATGTGKTMLVSKFIEDAYNNKERAILFAYEESRAQLNRNATSWG 328

>DCAM_TRYBB (P50244) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 370

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 LLPGQGCSFHSFKTNTYKLNYMESPSGI 232
           + P + CSF S++TNT  LNY +   G+
Sbjct: 263 ITPEEHCSFASYETNTCALNYSKCICGV 290

>PPARG_XENLA (P37234) Peroxisome proliferator-activated receptor gamma|
           (PPAR-gamma)
          Length = 477

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 251 HPRTGDQRDALKHIYSLYVEYVVKNPLYAPGSP 349
           +P + DQR   KH+Y  YV+        APG P
Sbjct: 207 NPESADQRVLAKHLYDSYVKSFPLTKAKAPGHP 239

>ABC3G_LAGLA (Q694B8) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)|
          Length = 381

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 344 CREHTEDFLQHTPHIGCRYASAHLVDHQ 261
           C E   +FLQ  PH+    ++A + D+Q
Sbjct: 288 CAEKVAEFLQENPHVNLHISAARIYDYQ 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,743,894
Number of Sequences: 219361
Number of extensions: 1866929
Number of successful extensions: 5671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5661
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)