Clone Information

BLAST Search Result

Clone Name	baal9n02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS1_SYNP6 (P46228) 30S ribosomal protein S1	82	8e-16
2	RS1_LEULA (P50889) 40S ribosomal protein S1	82	8e-16
3	RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A	79	9e-15
4	RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precurs...	79	1e-14
5	RS1_MYCLE (P46836) 30S ribosomal protein S1	74	2e-13
6	RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B	74	2e-13
7	RS1_MYCTU (O06147) 30S ribosomal protein S1	74	4e-13
8	ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	73	5e-13
9	RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog	72	8e-13
10	RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog	72	1e-12
11	RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1	71	2e-12
12	RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)	71	2e-12
13	RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1	71	2e-12
14	RS1_SYNP7 (O33698) 30S ribosomal protein S1	71	2e-12
15	RS1_BUCAI (P57395) 30S ribosomal protein S1	70	3e-12
16	RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)	70	5e-12
17	RS1_SHIFL (P0AG70) 30S ribosomal protein S1	69	9e-12
18	RS1_ECOLI (P0AG67) 30S ribosomal protein S1	69	9e-12
19	RS1_ECOL6 (P0AG68) 30S ribosomal protein S1	69	9e-12
20	RS1_ECO57 (P0AG69) 30S ribosomal protein S1	69	9e-12
21	ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	69	1e-11
22	ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	69	1e-11
23	RS1_BUCAP (Q44653) 30S ribosomal protein S1	68	2e-11
24	RS1_RICPR (Q9ZD28) 30S ribosomal protein S1	67	5e-11
25	GS13_BACSU (P80870) General stress protein 13 (GSP13)	66	6e-11
26	RS1_HAEIN (Q48082) 30S ribosomal protein S1	65	1e-10
27	YHGF_NEIMB (Q51152) Hypothetical protein NMB0075	65	1e-10
28	YHGF_NEIMA (P57072) Hypothetical protein NMA0194	65	1e-10
29	RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1	63	5e-10
30	MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-depend...	62	9e-10
31	RS1_RHIME (P14129) 30S ribosomal protein S1	62	1e-09
32	RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)	62	1e-09
33	YABR_BACSU (P37560) Hypothetical protein yabR	62	1e-09
34	RS1_CHLTR (O84100) 30S ribosomal protein S1	62	1e-09
35	RS1_HELPY (P56008) 30S ribosomal protein S1	61	2e-09
36	RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1	61	3e-09
37	RS1_STAS1 (Q49XT0) 30S ribosomal protein S1	60	3e-09
38	RS1_STAEQ (Q5HP69) 30S ribosomal protein S1	60	4e-09
39	RS1_STAAW (Q8NWM8) 30S ribosomal protein S1	58	2e-08
40	RS1_STAAS (Q6G987) 30S ribosomal protein S1	58	2e-08
41	RS1_STAAR (Q6GGT5) 30S ribosomal protein S1	58	2e-08
42	RS1_STAAC (Q5HFU7) 30S ribosomal protein S1	58	2e-08
43	RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5	57	3e-08
44	YHGF_ECOLI (P46837) Protein yhgF	56	6e-08
45	RS1_STAAN (Q7A5J0) 30S ribosomal protein S1	55	1e-07
46	RS1_STAAM (Q99U14) 30S ribosomal protein S1	55	1e-07
47	Y568_HAEIN (P71353) Hypothetical protein HI0568	54	4e-07
48	RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1	53	5e-07
49	TEX_BORPE (Q45388) Protein tex	53	7e-07
50	PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC...	51	2e-06
51	IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subuni...	50	4e-06
52	PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC...	50	4e-06
53	PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC...	50	6e-06
54	IF2A_HALMA (Q5UX22) Translation initiation factor 2 alpha subuni...	49	8e-06
55	PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC...	49	1e-05
56	IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subuni...	49	1e-05
57	IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subuni...	49	1e-05
58	IF2A_METTH (O27363) Translation initiation factor 2 alpha subuni...	48	2e-05
59	IF2A_METJA (Q57581) Translation initiation factor 2 alpha subuni...	48	2e-05
60	IF2A_PYRHO (O58655) Translation initiation factor 2 alpha subuni...	47	4e-05
61	IF2A_PYRAB (Q9V0E4) Translation initiation factor 2 alpha subuni...	47	4e-05
62	PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC...	46	6e-05
63	PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC...	45	1e-04
64	IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subuni...	45	1e-04
65	PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC...	44	2e-04
66	PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC...	44	3e-04
67	DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-)...	44	4e-04
68	IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subuni...	43	5e-04
69	DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-depend...	43	7e-04
70	PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC...	43	7e-04
71	PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC...	42	0.001
72	RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	41	0.002
73	PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA ...	40	0.004
74	IF2A_THEVO (Q97BP2) Translation initiation factor 2 alpha subuni...	40	0.004
75	RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death ...	40	0.006
76	RNR_HAEIN (P44907) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	39	0.010
77	RNR_BUCAI (P57628) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	39	0.010
78	DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-depend...	37	0.030
79	IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subuni...	37	0.039
80	RNR_BACSU (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	36	0.066
81	RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	36	0.087
82	BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1...	34	0.25
83	GBF_DICDI (P36417) G-box-binding factor (GBF)	33	0.43
84	R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab po...	33	0.56
85	VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai...	32	1.3
86	PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein ...	32	1.6
87	RNR_VIBCH (Q9KNY1) Ribonuclease R (EC 3.1.-.-) (RNase R)	32	1.6
88	PSAB_CHLMO (P36492) Photosystem I P700 chlorophyll a apoprotein ...	31	2.8
89	Y1198_METJA (Q58598) Hypothetical protein MJ1198	31	2.8
90	NO40_MOUSE (Q9ESX4) Nucleolar protein of 40 kDa (pNO40) (Zinc fi...	31	2.8
91	NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc fi...	31	2.8
92	DNAJ1_NOCFA (Q5YZX0) Chaperone protein dnaJ 1	30	3.6
93	DXS_CAMJE (Q9PIH8) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2...	30	3.6
94	FLHA_SALTY (P40729) Flagellar biosynthesis protein flhA	27	3.6
95	FLHA_ECOLI (P76298) Flagellar biosynthesis protein flhA	27	3.6
96	GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2) (Gam...	30	4.8
97	CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP ...	30	4.8
98	RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	30	4.8
99	SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-dete...	30	6.2
100	PSAB_MASLA (O52475) Photosystem I P700 chlorophyll a apoprotein ...	30	6.2
101	SPEN_DROME (Q8SX83) Protein split ends	30	6.2
102	FLHA_PROMI (Q51910) Flagellar biosynthesis protein flhA	25	7.7

>RS1_SYNP6 (P46228) 30S ribosomal protein S1|
          Length = 306

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 46/156 (29%), Positives = 84/156 (53%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G +++   ++GF+P   +S            +   +DLVG  + +K +E +E   +LV S
Sbjct: 132 GALVRIEGLRGFIPGSHIST-----------RKAKEDLVGEELPLKFLEVDEDRNRLVLS 180

Query: 183 EKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQD 362
            + A      +++++G +  G V  +  YGAF+ +        ++GL+HISE+S D ++ 
Sbjct: 181 HRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIG------GVSGLLHISEISHDHIET 234

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
                   D VKV+++++DAE+ RI LS +QLE +P
Sbjct: 235 PHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 270

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>RS1_LEULA (P50889) 40S ribosomal protein S1|
          Length = 429

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           GLI+  N ++GFVP  +++        +R + D+ +      +  +V+E + A  +L+ S
Sbjct: 158 GLIVDVNGVRGFVPASMVA--------ERFVSDLNQ-FKNKDIKAQVIEIDPANARLILS 208

Query: 183 EKD-------ASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            K        A  +   S++ +G + +G V  +  +GAFV L   DG      LVH+SE+
Sbjct: 209 RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDG------LVHVSEI 262

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKI 494
           S D V++  D LT+GD V V ++ +D EK RI LSI+  +  P  E  D+I
Sbjct: 263 SHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 313



 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
 Frame = +3

Query: 84  KRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVG 254
           K P   +TK   G  V VK++  +  + ++  S K      W   + Q+  G + +G V 
Sbjct: 268 KNPADVLTK---GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVK 324

Query: 255 SVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSR 434
            V  +GAFV +  P     + GLVH+S++S   +++  + L  GD V+V V+++   + R
Sbjct: 325 RVKDFGAFVEI-LPG----IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEER 379

Query: 435 IGLSIRQLEEDP 470
           I LS++ LEE P
Sbjct: 380 ISLSMKALEEKP 391

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>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 44/156 (28%), Positives = 82/156 (52%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G +++   ++GF+P   +S            ++  +DLVG  + +K +E +E   +LV S
Sbjct: 132 GALVRIEGLRGFIPGSHISA-----------REAKEDLVGEDLPLKFLEVDEERNRLVLS 180

Query: 183 EKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQD 362
            + A      + +++  +  G V  +  YGAF+ +        ++GL+HISE+S D +  
Sbjct: 181 HRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG------GVSGLLHISEISHDHIDT 234

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
                   D +KV+++++DAE+ RI LS +QLE +P
Sbjct: 235 PHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270

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>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 47/156 (30%), Positives = 83/156 (53%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G++     ++GFVP   +S            +   ++L+   + +K VE +E + +LV S
Sbjct: 198 GVVALVEGLRGFVPFSQISS-----------KSSAEELLEKEIPLKFVEVDEEQSRLVMS 246

Query: 183 EKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQD 362
            + A      +Q+ IG +  G V S+  YGAF+ +        + GL+H+S++S D V D
Sbjct: 247 NRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSD 299

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +   L  GDT+KV++++ D E+ R+ LS ++LE  P
Sbjct: 300 IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335

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>RS1_MYCLE (P46836) 30S ribosomal protein S1|
          Length = 481

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           GLIL    ++GF+P  L+          R ++D+ +  +G  +  K++E ++    +V S
Sbjct: 137 GLILDIG-LRGFLPASLVE--------MRRVRDL-QPYIGKEIEAKIIELDKNRNNVVLS 186

Query: 183 EKDASW---------SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHIS 335
            +  +W         S + +Q++ G I  G+V S+ ++GAFV L   DG      LVH+S
Sbjct: 187 RR--AWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDG------LVHVS 238

Query: 336 EVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           E+SW  +    + +  G+ V V V++VD ++ R+ LS++  +EDP
Sbjct: 239 ELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDP 283



 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG+ V+V+V++ +   +++  S K   +  W  ++    IG I  G V  +  +GAFV +
Sbjct: 254 VGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRV 313

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 467
           +  +G   + GLVHISE++   V+     +  GD   V V+++D E+ RI LS++Q  ED
Sbjct: 314 E--EG---IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368

Query: 468 PLLE 479
            + E
Sbjct: 369 YIEE 372

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>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B|
          Length = 305

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 2/175 (1%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G++     ++GF+P   L             +D    LVG  +   ++EAN+   KLV +
Sbjct: 130 GVVGDVEGLRGFIPRSHLMH-----------KDNMDALVGQVLKAHILEANQDNNKLVLT 178

Query: 183 EKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQD 362
           ++    +    ++  G IY+G V  +  YG FV ++       +TGL+H+S+VS   V  
Sbjct: 179 QRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIE------GVTGLLHVSQVSGTRVDS 232

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP--LLETLDKIIPLEPDLSP 521
           +      G  + V V  +D  K+RI LS R LE  P  L+E  D+++   P+  P
Sbjct: 233 LNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELVEKFDEMMADAPNRLP 287

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>RS1_MYCTU (O06147) 30S ribosomal protein S1|
          Length = 481

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           GLIL    ++GF+P  L+          R ++D+ +  +G  +  K++E ++    +V S
Sbjct: 137 GLILDIG-LRGFLPASLVE--------MRRVRDL-QPYIGKEIEAKIIELDKNRNNVVLS 186

Query: 183 EKDASW---------SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHIS 335
            +  +W         S + + ++ G I  G+V S+ ++GAFV L   DG      LVH+S
Sbjct: 187 RR--AWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDG------LVHVS 238

Query: 336 EVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           E+SW  +    + +  GD V V V++VD ++ R+ LS++  +EDP
Sbjct: 239 ELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V+V+V++ +   +++  S K   +  W  ++    IG I  G V  +  +GAFV +
Sbjct: 254 VGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRV 313

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 467
           +  +G   + GLVHISE++   V+     +  GD   V V+++D E+ RI LS++Q  ED
Sbjct: 314 E--EG---IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368

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>ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 642

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK---- 170
           G+I  Y  ++ F+P   +   H          D  K+ +G S  V ++E +  +++    
Sbjct: 409 GIIASYKGIRIFIPASHVELFH---------VDNLKEYIGKSFDVAIIEYSTKKRQTKIV 459

Query: 171 -----LVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHIS 335
                L+  EK+       ++++ G + +G V  +  +GAFV ++  DG      L+H+S
Sbjct: 460 ASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDG------LLHVS 513

Query: 336 EVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           E+SW  V+   D L  GD +KV V++VD E  ++ LS+++L E+P
Sbjct: 514 EISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
 Frame = +3

Query: 99  DVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHY 269
           DV K  +G  + V V+  ++  KKL  S K  +   W+    +  +G +  G V     +
Sbjct: 525 DVLK--IGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADF 582

Query: 270 GAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSI 449
           GAFV L+       + GLVHISE+S   +    D L  G+ +K  ++ V +E+ +IGLSI
Sbjct: 583 GAFVKLE-----PGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637

Query: 450 RQLEE 464
           R++EE
Sbjct: 638 REVEE 642

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>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  +    + G V    LS +H  K       DV ++  G  V VKV+  +   +++  S
Sbjct: 202 GAFVDIGGIDGLVHISQLSHSHVEKP-----SDVVEE--GQEVKVKVLSVDRDNERISLS 254

Query: 183 EKDA---SWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 353
            KD     W+    +VK G + +G V  +  +GAFV +  P     + GLVHIS++S   
Sbjct: 255 IKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEI-LPG----VEGLVHISQISNKH 309

Query: 354 VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLD 488
           +    + L EG TVKV V++V+  + RI LS+R+LEE P  +  D
Sbjct: 310 IGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETPKADQED 354



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
 Frame = +3

Query: 27  MQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSL 206
           ++GF+P  L+  AH+       ++D T D  G ++S+ VVE +  + +++ S +    S 
Sbjct: 123 VRGFIPASLVE-AHF-------VEDFT-DYKGKTLSLLVVELDRDKNRVILSHRAVVESE 173

Query: 207 YSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDV 365
            +++       +++G + DG V  +  +GAFV +   DG      LVHIS++S   V+  
Sbjct: 174 QANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDG------LVHISQLSHSHVEKP 227

Query: 366 QDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIP 500
            D + EG  VKV V++VD +  RI LSI+     P  +  +K+ P
Sbjct: 228 SDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKP 272

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>RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
 Frame = +3

Query: 27  MQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------ 188
           ++GF+P  L+   H+       ++D T D  G +++VK+VE +  + +++ S K      
Sbjct: 124 VRGFIPASLVE-VHY-------VEDFT-DYKGKTLAVKIVELDREKNRVILSHKAVVELE 174

Query: 189 -DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDV 365
            D+      S +K G + +G V  +  +GAFV++   DG      LVHIS++S + V+  
Sbjct: 175 LDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDG------LVHISQISHERVEQP 228

Query: 366 QDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
            + L +G  VKV V++VDA+  RI LSI+  +  P
Sbjct: 229 SEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGP 263



 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
 Frame = +3

Query: 120 GSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQ 290
           G  V VKV+  +   +++  S K A    W   + +VK G I +GIV  +  +GAFV + 
Sbjct: 235 GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAFVEI- 293

Query: 291 FPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQ-LEED 467
            P     + GLVH+S+++   V++  + L  G  VKV V+ V   + RI LSI++  EE+
Sbjct: 294 LPG----VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEEN 349

Query: 468 PLLETLDKIIP 500
            + E   +  P
Sbjct: 350 NVTEDYSQYEP 360

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>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1|
          Length = 566

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++   ++ F+P  L+          RP+++ T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELEDIRAFLPGSLVDI--------RPVRE-TMHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQVKI-------GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S Y+++  +       G I  GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD VK+ ++  D EK R+ L ++QL +DP
Sbjct: 224 AWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266



 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           V S V V +++ +E  +++    K      W  +S +   G    G + S+  +G F+ L
Sbjct: 324 VNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDL--VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
           +       + GLVH+S++SW++   + V+ +  +G+ V  +V+ VD ++ RI L I+QL+
Sbjct: 384 EGS-----IDGLVHLSDISWNISGEESVKKY-KKGEEVLAVVLQVDPDRERISLGIKQLQ 437

Query: 462 EDP 470
           EDP
Sbjct: 438 EDP 440



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V +K+++ +  + ++    K  S   W+  S +        G V ++  YG FV +
Sbjct: 237 IGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +     VKV+++++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 351

Query: 465 DPLLE 479
           +P +E
Sbjct: 352 NPWME 356

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>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)|
          Length = 565

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K    P + V+       V V+V+E +  ++++    K      W ++  +  
Sbjct: 315 VSEMSWTKKNMHPGKIVS---TSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHP 371

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 401
           +G   +G V +   +G F+ L   DG+  + G+VH+S++ W L  + V D   +GD VK 
Sbjct: 372 VGSTVEGEVKNKTEFGLFLGL---DGD--VDGMVHLSDLDWKLPGEQVIDNFKKGDMVKA 426

Query: 402 IVVNVDAEKSRIGLSIRQLEEDPLLETLD 488
           +V++VD EK RI L ++QLE DP  E  D
Sbjct: 427 VVLDVDVEKERISLGVKQLEGDPFAEPGD 455



 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
 Frame = +3

Query: 87  RPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQ-------VKIGGIYDG 245
           RPI+DV   L+ +S   ++++ +     +V S +       + Q       ++ G + DG
Sbjct: 148 RPIRDVAP-LMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDG 206

Query: 246 IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAE 425
           +V ++  YGAFV L   DG      L+H+++++W  V    + LT G TVKV ++ ++ E
Sbjct: 207 VVKNITDYGAFVDLGGIDG------LLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHE 260

Query: 426 KSRIGLSIRQLEEDP 470
             RI L ++QL +DP
Sbjct: 261 THRISLGMKQLLDDP 275



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           +G +V VK+++ N    ++    K   D  W    ++  +   + G V ++  YGAFV L
Sbjct: 246 IGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVEL 305

Query: 288 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +       + GL+H+SE+SW          ++    V+V V+ VD+ K RI L ++Q   
Sbjct: 306 E-----PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMR 360

Query: 465 DP 470
           +P
Sbjct: 361 NP 362

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>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1|
          Length = 263

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 43/153 (28%), Positives = 79/153 (51%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G+I+    + GFVPN  L+  ++ K+                + +K++   E    L+ S
Sbjct: 128 GMIVNLEGISGFVPNSHLN--NFSKNTSS---------TNKFIKLKLLNVEEKSNNLILS 176

Query: 183 EKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQD 362
            + A  +  SS + +G I +G++  +  YG F+      GN  L GLVHISE++   V+ 
Sbjct: 177 HRRALIAQASSNLIVGNIIEGVINQITPYGLFIKA----GN--LKGLVHISEINVKQVER 230

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
           +      GDT+K ++++VD ++ R+ LS++ L+
Sbjct: 231 IPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263

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>RS1_SYNP7 (O33698) 30S ribosomal protein S1|
          Length = 295

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 46/141 (32%), Positives = 75/141 (53%)
 Frame = +3

Query: 114 LVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQF 293
           L G +++V  +E N A+KKLV SE+ A+ +    ++++G + +G V  +  +G FV L  
Sbjct: 155 LKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLG- 213

Query: 294 PDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPL 473
                  T L+ I+++S   V DV      GD ++ +VV +D  K RI LS + LE  P 
Sbjct: 214 -----GATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHP- 267

Query: 474 LETLDKIIPLEPDLSPDAEAA 536
            E L+ +  L+   +  AE A
Sbjct: 268 GEILENVAELQASAADRAERA 288

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>RS1_BUCAI (P57395) 30S ribosomal protein S1|
          Length = 558

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNDIRAFLPGSLVDV--------RPVRD-TIHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLS 518
           +W  V+   + +  GD + + ++  D E++R+ L ++QL EDP +  + K  P E  LS
Sbjct: 224 AWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWI-AISKRYPEETKLS 281



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W      P + VT   V   V V V++ +E  +++    K      W  +S   K
Sbjct: 306 VSEMDWTNKNIHPSKVVT---VNDVVEVMVLDIDEERRRISLGLKQCKINPWKEFSETHK 362

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 401
            G    G + S+  +G F+ L     N  + GLVH+S++SW +  ++      + D +  
Sbjct: 363 KGVHVLGKIKSITDFGIFIGL-----NGGIDGLVHLSDISWTIPGEEAVVKYKKNDEISA 417

Query: 402 IVVNVDAEKSRIGLSIRQLEEDP 470
           +V+ VDAE+ RI L I+QLEEDP
Sbjct: 418 VVLQVDAERERISLGIKQLEEDP 440



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  +++K+++ +    ++    K      W   S +        G V ++  YG FV +
Sbjct: 237 VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +T  D V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351

Query: 465 DPLLE 479
           +P  E
Sbjct: 352 NPWKE 356

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>RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)|
          Length = 378

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 14  GFTVELNGIRAFLPGSLVDV--------RPVRDTTH-LEGKELEFKVIKLDQKRNNVVVS 64

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 65  RRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 118

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 119 AWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 219 VGDVVEVMVLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 278

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
           +       + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 279 EGG-----IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 332

Query: 462 EDP 470
           EDP
Sbjct: 333 EDP 335



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 132 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 191

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 192 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246

Query: 465 DP 470
           +P
Sbjct: 247 NP 248

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>RS1_SHIFL (P0AG70) 30S ribosomal protein S1|
          Length = 557

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 462 EDP 470
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 465 DP 470
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 224
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 405 VVNVDAEKSRIGLSIRQLEE 464
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECOLI (P0AG67) 30S ribosomal protein S1|
          Length = 557

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 462 EDP 470
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 465 DP 470
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 224
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 405 VVNVDAEKSRIGLSIRQLEE 464
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECOL6 (P0AG68) 30S ribosomal protein S1|
          Length = 557

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 462 EDP 470
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 465 DP 470
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 224
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 405 VVNVDAEKSRIGLSIRQLEE 464
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECO57 (P0AG69) 30S ribosomal protein S1|
          Length = 557

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 461
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 462 EDP 470
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 465 DP 470
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 224
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 405 VVNVDAEKSRIGLSIRQLEE 464
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 827

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = +3

Query: 33  GFVPNPL--LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSL 206
           GF+PN L  +S +    + K+ IQ + KD       +K+   ++  +K+ +S KD   + 
Sbjct: 415 GFLPNSLSEISDSEEKVNGKK-IQVIVKD-------IKMDPKDKKNRKITYSVKDIRLAE 466

Query: 207 YSSQ---VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFL 377
              +   + +G I D +V  V  +G  V +        L G +HISEVSW  +  + D  
Sbjct: 467 QEKEFAGLAVGQIVDCVVTEVLDFGLAVDINT------LKGFIHISEVSWKRLDKLSDNY 520

Query: 378 TEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
             GD +K +VV++D  K  + LSI++LEEDP
Sbjct: 521 KVGDKIKAVVVSLDEAKRNVKLSIKKLEEDP 551



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 4/167 (2%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           GL +  N+++GF+    +S   W +  K  + D  K  VG  +   VV  +EA++ +  S
Sbjct: 491 GLAVDINTLKGFIH---ISEVSWKRLDK--LSDNYK--VGDKIKAVVVSLDEAKRNVKLS 543

Query: 183 EK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 353
            K   +  W+  +++ K+    +GIV  V  YGAFV ++       + GLVHIS+ SW  
Sbjct: 544 IKKLEEDPWATVANEFKVDDEIEGIVTKVLPYGAFVEIK-----PGVEGLVHISDFSWTK 598

Query: 354 VQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 491
            + +V D++ E + +KV + ++  E  ++ L I+QL  +P  ET +K
Sbjct: 599 KKVNVADYVKEREKIKVRITDLHPEDRKLKLGIKQLVANP-WETAEK 644



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
 Frame = +3

Query: 96   QDVTKDLVGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFH 266
            +++ K  +G+ V +K+ E +   KK+  S K    + W     + K+G   +  + +V  
Sbjct: 686  EEIPKFEIGNEVELKITELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVAD 745

Query: 267  YGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLS 446
            +G F+ L        + G +     S + +++++D  +EGD VK  VV V+ E  +I LS
Sbjct: 746  FGLFIELI-----KGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800

Query: 447  IRQLE 461
            I+++E
Sbjct: 801  IKKIE 805

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>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  + V + + ++ +KKL  S KD +   W     +  +G I  G V     +GAFV L
Sbjct: 521 VGDKIKVYIKDIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRFASFGAFVEL 580

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +       + GL+HIS++S   V  V+D L+ G+ VK  +V VD EK +IGLSI+++ +
Sbjct: 581 E-----PGVDGLIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIKEVND 634



 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
 Frame = +3

Query: 120 GSSVSVKVVEANEAEK--KLVFSEKDASWSLYS-------SQVKIGGIYDGIVGSVFHYG 272
           G  ++V ++E  E     ++V S +D      S       S ++   I +G V  +  +G
Sbjct: 431 GCELTVNIIEFEEGRNNTRIVASRRDLLKEEQSKVEEETWSSLEKDTIKEGEVRRLTDFG 490

Query: 273 AFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
           AFV++   DG      L+H+SE+SW  V+   D L  GD +KV + ++D +K ++ LSI+
Sbjct: 491 AFVNINGVDG------LLHVSEISWGRVEKPSDMLKVGDKIKVYIKDIDKDKKKLALSIK 544

Query: 453 QLEEDP 470
            L +DP
Sbjct: 545 DLTKDP 550



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 216 QVKIGGIYDG-IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
           Q+ IG   +G IV  V    A+V++      Y    ++ +SEV+ D  +D+ +F+ +GD 
Sbjct: 294 QISIGQEVEGEIVSIVSSNEAYVNI-----GYKSDAILLLSEVTKDNDEDINNFVKKGDI 348

Query: 393 VKVIVVNVDAEKSRIGLSIRQLEED 467
           +K  ++ + +E     +S+ +L  +
Sbjct: 349 IKGKIIKLGSENKPPVISVIELNRE 373

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>RS1_BUCAP (Q44653) 30S ribosomal protein S1|
          Length = 559

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNEIRAFLPGSLVDV--------RPVRD-TIHLEGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD + V ++  D E++R+ L ++QL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDP 266



 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           V + V V V++ +E  +++    K      W  +S   K G    G + S+  +G F+ L
Sbjct: 324 VNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +       + GLVH+S++SW +  ++      +GD +  +V+ VDAE+ RI L I+QLEE
Sbjct: 384 KGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEE 438

Query: 465 DP 470
           DP
Sbjct: 439 DP 440



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  ++VK+++ ++   ++    K      W   S++   G    G V ++  YG FV +
Sbjct: 237 VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +  +G   + GLVH+SE+ W          +   + V VIV+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKI 351

Query: 465 DPLLE 479
           +P  E
Sbjct: 352 NPWQE 356

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>RS1_RICPR (Q9ZD28) 30S ribosomal protein S1|
          Length = 568

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +3

Query: 129 VSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPD 299
           V V V++ +E  K++    K      W     +  +G    G V +   YG F+ L+  D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311

Query: 300 GNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLL 476
           G   L GLVH SE+SW    Q+ +  LT G  V+ IV+ VD EK R+ LSI+Q +E+PL+
Sbjct: 312 G---LEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368

Query: 477 E 479
           +
Sbjct: 369 K 369



 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 30/86 (34%), Positives = 50/86 (58%)
 Frame = +3

Query: 213 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
           S++K G + +G+V ++  YGAF+ L   DG      L+H++++SW  V    + L     
Sbjct: 200 SKIKEGIVLEGVVKNITDYGAFIDLGSVDG------LLHLTDISWGRVNHPSEVLEFNQK 253

Query: 393 VKVIVVNVDAEKSRIGLSIRQLEEDP 470
           VKV+V+  D +  RI L I+QL+ +P
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNP 279

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>GS13_BACSU (P80870) General stress protein 13 (GSP13)|
          Length = 129

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 42/112 (37%), Positives = 64/112 (57%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           +++ ++G +Y G V  +  YGAFV L     +    GLVHISEV+   V+D+ + L+ GD
Sbjct: 1   AAKFEVGSVYTGKVTGLQAYGAFVAL-----DEETQGLVHISEVTHGFVKDINEHLSVGD 55

Query: 390 TVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSP 545
            V+V V+ VD EK +I LSIR  +  P      +  P +P  +  +E AS+P
Sbjct: 56  EVQVKVLAVDEEKGKISLSIRATQAAP---EKKESKPRKPKAAQVSEEASTP 104

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>RS1_HAEIN (Q48082) 30S ribosomal protein S1|
          Length = 549

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           +G +V V V+E +E  +++    K      W+ ++     G    G + S+  +G F+ L
Sbjct: 324 LGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGL 383

Query: 288 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +       + GLVH+S++SW +  ++      +GD V  +V+ VDA K RI L I+QLEE
Sbjct: 384 EGG-----IDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEE 438

Query: 465 DP 470
           DP
Sbjct: 439 DP 440



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  ++ N ++ F+P  L+          RP ++    L+G  +  KV++ ++    +V S
Sbjct: 119 GFTVELNGVRAFLPGSLVDT--------RPAREADH-LLGKELEFKVIKLDQKRNNVVVS 169

Query: 183 EKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 341
            +    S  S +       +  G    G+V ++  YGAFV L   DG      L+HI+++
Sbjct: 170 RRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDG------LLHITDM 223

Query: 342 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +W  V+   + +  GD V V V+  D +++R+ L ++QL +DP
Sbjct: 224 AWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V+VKV++ ++   ++    K      W+  +    +     G V ++  YG FV +
Sbjct: 237 VGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEI 296

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
              DG   + GLVH+SE+ W          ++ GDTV+V+V+ +D E+ RI L ++Q + 
Sbjct: 297 L--DG---VEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKA 351

Query: 465 DPLLETLD 488
           +P  +  D
Sbjct: 352 NPWTQFAD 359

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>YHGF_NEIMB (Q51152) Hypothetical protein NMB0075|
          Length = 757

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 56/86 (65%)
 Frame = +3

Query: 213 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
           S +++G I +G+V +V ++GAFV     D   H  GLVHIS +S   VQD ++ +  GD 
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFV-----DIGVHQDGLVHISALSNKFVQDPREVVKAGDV 689

Query: 393 VKVIVVNVDAEKSRIGLSIRQLEEDP 470
           VKV V+ VDA + RI L++R L+++P
Sbjct: 690 VKVKVLEVDAARKRIALTMR-LDDEP 714

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>YHGF_NEIMA (P57072) Hypothetical protein NMA0194|
          Length = 757

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 56/86 (65%)
 Frame = +3

Query: 213 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
           S +++G I +G+V +V ++GAFV     D   H  GLVHIS +S   VQD ++ +  GD 
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFV-----DIGVHQDGLVHISALSNKFVQDPREVVKAGDV 689

Query: 393 VKVIVVNVDAEKSRIGLSIRQLEEDP 470
           VKV V+ VDA + RI L++R L+++P
Sbjct: 690 VKVKVLEVDAARKRIALTMR-LDDEP 714

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>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1|
          Length = 552

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G+ +K+  + G V    +S        K P+        G  V VK +  +E +++L  S
Sbjct: 214 GIFVKFKGIDGLVHYSEISH-------KGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLS 266

Query: 183 EK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 353
            K   +  W     ++K G     +V ++ HYG FV +    GN  + G +H+SE+SWD 
Sbjct: 267 IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDI----GN-DIEGFLHVSEISWDK 321

Query: 354 -VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
            V     +L+ G  + V ++++D +  R+ +S++QL   P
Sbjct: 322 NVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRP 361



 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = +3

Query: 21  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS- 197
           N ++GF+    +S   W K+   P   ++   VG  + VK+++ +   ++L  S K  + 
Sbjct: 306 NDIEGFLH---VSEISWDKNVSHPSHYLS---VGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 198 --WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQD 371
             + ++ S+ ++G I +G V ++  +GAF++L   DG      L+H  +  WD  +  +D
Sbjct: 360 RPFDVFESKHQVGDIVEGKVATLTDFGAFLNLGGVDG------LLHNHDAFWDKDKKCKD 413

Query: 372 FLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 491
               GD +KV ++ ++ +  +I LS + L   P  E   K
Sbjct: 414 HYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQK 453



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 32/86 (37%), Positives = 44/86 (51%)
 Frame = +3

Query: 243 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDA 422
           G+V  +  +G FV  +  DG      LVH SE+S     + + +  EGD V V  +  D 
Sbjct: 205 GVVRQITPFGIFVKFKGIDG------LVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDE 258

Query: 423 EKSRIGLSIRQLEEDPLLETLDKIIP 500
           EK R+ LSI+   EDP  E  DK+ P
Sbjct: 259 EKRRLSLSIKATIEDPWEEIQDKLKP 284

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>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 41/114 (35%), Positives = 65/114 (57%)
 Frame = +3

Query: 186 KDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDV 365
           +D   +  S   +IG IYDG V S+  +GAF+ L+         GLVHIS++  + VQ V
Sbjct: 220 RDDGGARKSEVAEIGKIYDGRVNSIQSFGAFITLE--GFRQKQEGLVHISQIRNERVQTV 277

Query: 366 QDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDA 527
            D L  G+ VKV V  +  E  +I LS+++++++    + + + P E DL+PDA
Sbjct: 278 ADVLKRGENVKVKVNKI--ENGKISLSMKEVDQN----SGEDLNPRETDLNPDA 325

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>RS1_RHIME (P14129) 30S ribosomal protein S1|
          Length = 568

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
 Frame = +3

Query: 87  RPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQ-------VKIGGIYDG 245
           RPI+DVT  L+ +    ++++ ++    +V S +       + Q       ++ G + +G
Sbjct: 145 RPIRDVTP-LMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEG 203

Query: 246 IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAE 425
           +V ++  YGAFV L   DG      L+H+++++W  V    + L  G  VKV ++ ++ E
Sbjct: 204 VVKNITDYGAFVDLGGIDG------LLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 426 KSRIGLSIRQLEEDP 470
             RI L ++QLE DP
Sbjct: 258 THRISLGMKQLESDP 272



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V V+++  N+   ++    K      W    ++  +G    G V ++  YGAFV L
Sbjct: 243 IGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVEL 302

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +       + GL+HISE+SW          L+    V V+V+ VD  K RI L ++Q  E
Sbjct: 303 E-----PGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLE 357

Query: 465 DP 470
           +P
Sbjct: 358 NP 359



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDA---SWSLYSSQVK 224
           +S   W K    P + ++       V V V+E +  ++++    K      W  ++    
Sbjct: 312 ISEMSWTKKNVHPGKILS---TSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHP 368

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 401
            G   +G V +   +G F+ L   DG+  + G+VH+S++ W+   + V +   +GD V+ 
Sbjct: 369 AGTEVEGEVKNKTEFGLFIGL---DGD--VDGMVHLSDLDWNRPGEQVIEEFNKGDVVRA 423

Query: 402 IVVNVDAEKSRIGLSIRQLEEDPLLE 479
           +V++VD +K RI L I+QL  D + E
Sbjct: 424 VVLDVDVDKERISLGIKQLGRDAVGE 449

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>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)|
          Length = 570

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K+   P + V K   G  V V V+   + E K+    K      W     +  
Sbjct: 334 VSEMSWVKNIVDPNEVVNK---GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYP 390

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKV 401
           IG      + ++ +YGAFV L+       + GL+HIS++SW   V    +   +G+TV+ 
Sbjct: 391 IGLRVTAEIKNLTNYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEA 445

Query: 402 IVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLS 518
           ++++VD E  +I L ++QL  +P  + ++ + P+  D+S
Sbjct: 446 VILSVDKESKKITLGVKQLTPNP-WDEIEAMFPVGSDIS 483



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K    P +   K   G++V   ++  ++  KK+    K  +   W    +   
Sbjct: 421 ISDMSWIKKVSHPSELFKK---GNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEAMFP 477

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
           +G    GIV  +  +GAFV LQ       + GL+H+S++S      ++D L+ GD V   
Sbjct: 478 VGSDISGIVTKITAFGAFVELQ-----NGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAK 532

Query: 405 VVNVDAEKSRIGLSIRQ 455
           V+ +D +  ++ LSI++
Sbjct: 533 VIKLDPDHKKVSLSIKE 549



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
 Frame = +3

Query: 111 DLVGSSVSVKVVEANEAEKKLVFSEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHY 269
           D VG     K+++ N   + +V S ++       +  +    Q+ IG    GIV ++  +
Sbjct: 174 DYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDF 233

Query: 270 GAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSI 449
           G F+ L   DG   + GL+HI++++W  ++   + +     ++VI+++VD EK R+ L +
Sbjct: 234 GVFLDL---DG---IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGL 287

Query: 450 RQLEEDPLLETLDKIIP 500
           +Q E +P  E ++K  P
Sbjct: 288 KQKEHNP-WEDIEKKYP 303



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +3

Query: 129 VSVKVVEANEAEKKLVFSEKDAS-WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 305
           V +  V+  +    L   +K+ + W     +   G    G +  +  YGAF+ ++  +G 
Sbjct: 271 VIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIE--EG- 327

Query: 306 YHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
             + GL+H+SE+SW   + D  + + +GD V+V+V+++  ++ +I L ++Q E +P
Sbjct: 328 --IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNP 381

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>YABR_BACSU (P37560) Hypothetical protein yabR|
          Length = 128

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 37/96 (38%), Positives = 59/96 (61%)
 Frame = +3

Query: 219 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 398
           +++G    G +  + ++GAFV L  P G+   TGLVHISEV+ + V+D+ D L  GD V+
Sbjct: 3   IEVGSKLQGKITGITNFGAFVEL--PGGS---TGLVHISEVADNYVKDINDHLKVGDQVE 57

Query: 399 VIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLE 506
           V V+NV+ +  +IGLSI++ ++ P     +   P E
Sbjct: 58  VKVINVEKD-GKIGLSIKKAKDRPQARPRNDFRPKE 92

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>RS1_CHLTR (O84100) 30S ribosomal protein S1|
          Length = 569

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K+   P + V K   G  V V V+   + E K+    K      W     +  
Sbjct: 334 VSEMSWVKNIVDPNEVVNK---GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYP 390

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKV 401
           IG      + ++ +YGAFV L+       + GL+HIS++SW   V    +   +G+TV+ 
Sbjct: 391 IGLRVTAEIKNLTNYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEA 445

Query: 402 IVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLS 518
           ++++VD E  +I L ++QL  +P  + ++ + P+  D+S
Sbjct: 446 VILSVDKESKKITLGVKQLTPNP-WDEIEVMFPVGSDIS 483



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K    P +   K   G++V   ++  ++  KK+    K  +   W        
Sbjct: 421 ISDMSWIKKVSHPSELFKK---GNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVMFP 477

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
           +G    G+V  +  +GAFV LQ       + GL+H+SE+S      ++D L+ GD V   
Sbjct: 478 VGSDISGVVTKITAFGAFVELQ-----NGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAK 532

Query: 405 VVNVDAEKSRIGLSIRQ 455
           V+ +D +  ++ LSI++
Sbjct: 533 VIKLDPDHKKVSLSIKE 549



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
 Frame = +3

Query: 111 DLVGSSVSVKVVEANEAEKKLVFSEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHY 269
           D VG     K+++ N   + +V S ++       +  +    Q+ IG    GIV ++  +
Sbjct: 174 DYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDF 233

Query: 270 GAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSI 449
           G F+ L   DG   + GL+HI++++W  ++   + +     ++VI+++VD EK R+ L +
Sbjct: 234 GVFLDL---DG---IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGL 287

Query: 450 RQLEEDPLLETLDKIIP 500
           +Q E +P  E ++K  P
Sbjct: 288 KQKEHNP-WEDIEKKYP 303



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +3

Query: 129 VSVKVVEANEAEKKLVFSEKDAS-WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 305
           V +  V+  +    L   +K+ + W     +   G    G +  +  YGAF+ ++  +G 
Sbjct: 271 VIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIE--EG- 327

Query: 306 YHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
             + GL+H+SE+SW   + D  + + +GD V+V+V+++  ++ +I L ++Q + +P
Sbjct: 328 --IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

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>RS1_HELPY (P56008) 30S ribosomal protein S1|
          Length = 556

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = +3

Query: 21  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS- 197
           N ++GF+    +S   W K+   P   ++   VG  + VK+++ +   ++L  S K  + 
Sbjct: 310 NDIEGFLH---VSEISWDKNVSHPNNYLS---VGQEIDVKIIDIDPKNRRLRVSLKQLTN 363

Query: 198 --WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQD 371
             + ++ S+ ++G + +G V ++  +GAF++L   DG      L+H  +  WD  +  +D
Sbjct: 364 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDG------LLHNHDAFWDKDKKCKD 417

Query: 372 FLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 491
               GD +KV ++ ++ +  +I LS + L   P  E   K
Sbjct: 418 HYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQK 457



 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = +3

Query: 120 GSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQ 290
           G  V VK +  +  +++L  S K   +  W     ++K G     +V ++ HYG FV + 
Sbjct: 250 GDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDI- 308

Query: 291 FPDGNYHLTGLVHISEVSWDL-VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 467
              GN  + G +H+SE+SWD  V    ++L+ G  + V ++++D +  R+ +S++QL   
Sbjct: 309 ---GN-DIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR 364

Query: 468 P 470
           P
Sbjct: 365 P 365



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%)
 Frame = +3

Query: 243 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDA 422
           G+V  +  +G FV  +       + GLVH SE+S     + + +  EGD V V  +  DA
Sbjct: 209 GVVRQITPFGIFVEAK------GIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDA 262

Query: 423 EKSRIGLSIRQLEEDPLLETLDKIIP 500
           EK R+ LSI+   EDP  E  DK+ P
Sbjct: 263 EKRRLSLSIKATIEDPWEEIQDKLKP 288

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>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1|
          Length = 580

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K    P +   K   G+SV   ++  ++  KK+    K  S   W+   +   
Sbjct: 421 ISDMSWIKKVSHPSELFKK---GNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFP 477

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
            G +  G+V  +  +GAFV LQ       + GL+H+SE+S      ++D ++ G+ V   
Sbjct: 478 AGTVISGVVTKITAFGAFVELQ-----NGIEGLIHVSELSDKPFAKIEDIISIGENVSAK 532

Query: 405 VVNVDAEKSRIGLSIRQLEED 467
           V+ +D +  ++ LS+++   D
Sbjct: 533 VIKLDPDHKKVSLSVKEYLAD 553



 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
 Frame = +3

Query: 111 DLVGSSVSVKVVEANEAEKKLVFSEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHY 269
           D VG     K+++ N   + +V S ++       +  +    Q+ IG    G+V ++  +
Sbjct: 174 DYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDF 233

Query: 270 GAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSI 449
           G F+ L   DG   + GL+HI++++W  ++   + +     ++VI+++VD EK R+ L +
Sbjct: 234 GVFLDL---DG---IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGL 287

Query: 450 RQLEEDPLLETLDKIIP 500
           +Q E +P  E ++K  P
Sbjct: 288 KQKEHNP-WEDIEKKYP 303



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
 Frame = +3

Query: 54  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 224
           +S   W K+   P + V K   G  V   V+   + E K+    K      W     +  
Sbjct: 334 ISEMSWVKNIVDPSEVVNK---GDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYP 390

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKV 401
           IG   +  + ++ +YGAFV L+       + GL+HIS++SW   V    +   +G++V+ 
Sbjct: 391 IGLHVNAEIKNLTNYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEA 445

Query: 402 IVVNVDAEKSRIGLSIRQLEEDP 470
           ++++VD E  +I L ++QL  +P
Sbjct: 446 VILSVDKESKKITLGVKQLSSNP 468



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +3

Query: 243 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVD 419
           G +  +  YGAF+ ++  +G   + GL+HISE+SW   + D  + + +GD V+ IV+++ 
Sbjct: 310 GKIVKLLPYGAFIEIE--EG---IEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQ 364

Query: 420 AEKSRIGLSIRQLEEDP 470
            ++ +I L ++Q E +P
Sbjct: 365 KDEGKISLGLKQTERNP 381

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>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLY 209
           +GFVP  L+S           I+D + D  G  + +KV E + A  +++ S K A  +L 
Sbjct: 130 RGFVPASLISTDF--------IEDFS-DFEGQVLKLKVEELDPANNRVILSRK-AVEALE 179

Query: 210 SSQVKI--------GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDV 365
           +++ K         G + +G V  + ++GAFV +   DG      LVH+SE+S + V+  
Sbjct: 180 NAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDG------LVHVSELSHEHVKSP 233

Query: 366 QDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           +D ++ G+TV V + +VD +  RI LSI+     P
Sbjct: 234 EDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSP 268



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
 Frame = +3

Query: 3   GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 182
           G  +    + G V    LS  H  K P    +DV    +G +V+VK+   ++  +++  S
Sbjct: 208 GAFVDIGGVDGLVHVSELSHEH-VKSP----EDVVS--IGETVNVKIKSVDKDSERISLS 260

Query: 183 EKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 353
            KD   S + S   +   G + +G V  + ++GAFV ++       + GLVHISE+S   
Sbjct: 261 IKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIK-----PGVQGLVHISEISHSH 315

Query: 354 VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
           +    + L  G  V V V+ VD E  RI LSI+
Sbjct: 316 IGSPSEALEPGQVVSVKVLGVDVENERISLSIK 348

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>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1|
          Length = 392

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQLEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA  +     +  G + DG V  + ++GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G+ VKV V +V+ +  RI LSI+     P
Sbjct: 235 EVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTP 268



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           VG +V VKV    +  +++  S KD   + + +   +     + +G V  + ++GAFV +
Sbjct: 239 VGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE+    +    + L  G  V V ++ +D +  RI LSI+
Sbjct: 299 A-----PSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIK 348

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>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1|
          Length = 391

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAS (Q6G987) 30S ribosomal protein S1|
          Length = 391

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1|
          Length = 391

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q       +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1|
          Length = 391

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5|
          Length = 1729

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 29/80 (36%), Positives = 47/80 (58%)
 Frame = +3

Query: 213  SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
            S +K G +++G + SV  +G FV L   D   ++TGL HI+E++    +D+      GD 
Sbjct: 1260 SDIKAGDVFEGTIKSVTDFGVFVKL---DNTVNVTGLAHITEIADKKPEDLSALFGVGDR 1316

Query: 393  VKVIVVNVDAEKSRIGLSIR 452
            VK IV+  + EK +I LS++
Sbjct: 1317 VKAIVLKTNPEKKQISLSLK 1336



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
 Frame = +3

Query: 93   IQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYS----SQVKIGGIYDGIVGSV 260
            +++  +D + + +   V+  +E  KK+  S + A+    S      +K G I DGIV +V
Sbjct: 1128 LKEAFEDKINNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNV 1187

Query: 261  FHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIG 440
               G FV+L     +  +   V +S++S   +++ + F      V   VV  D E SRI 
Sbjct: 1188 NDKGIFVYL-----SRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCD-EDSRIS 1241

Query: 441  LSIRQLEEDPLLETL 485
            L++R+ E +  L+ L
Sbjct: 1242 LTLRESEINGDLKVL 1256



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 312 LTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPL--LETL 485
           L+G +  SE+S   V+  ++ L  G TV V +++VDA++ RI  + +   E      +T+
Sbjct: 630 LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 486 DKIIP 500
           + I+P
Sbjct: 690 ENIVP 694

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>YHGF_ECOLI (P46837) Protein yhgF|
          Length = 773

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 35/81 (43%), Positives = 48/81 (59%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G I +G V +V ++GAFV     D   H  GLVHIS +S   V+D    +  GD VKV V
Sbjct: 651 GMILEGAVTNVTNFGAFV-----DIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKV 705

Query: 408 VNVDAEKSRIGLSIRQLEEDP 470
           + VD ++ RI L++R L+E P
Sbjct: 706 LEVDLQRKRIALTMR-LDEQP 725

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>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1|
          Length = 391

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G +  G V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAM (Q99U14) 30S ribosomal protein S1|
          Length = 391

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQEEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           DA        +  G +  G V  +  +GAF+ +   DG      LVH+SE+S + VQ  +
Sbjct: 181 DAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDG------LVHVSELSHEHVQTPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           + ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 235 EVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 452
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>Y568_HAEIN (P71353) Hypothetical protein HI0568|
          Length = 762

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 46/80 (57%)
 Frame = +3

Query: 213 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 392
           + +K G I +G V +V ++GAFV     D   H  GLVHIS +S   V+D    +  G+ 
Sbjct: 646 TDLKSGMILEGTVTNVTNFGAFV-----DIGVHQDGLVHISSLSDKFVEDPHQVVKTGNI 700

Query: 393 VKVIVVNVDAEKSRIGLSIR 452
           VKV V+ VD  + RI L++R
Sbjct: 701 VKVKVLEVDVPRKRIALTMR 720

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>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1|
          Length = 392

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
 Frame = +3

Query: 30  QGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEK------- 188
           +GFVP  L+S           I+D +    G ++ +KV E +    +++ S K       
Sbjct: 130 RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVILSRKAVEQAEN 180

Query: 189 DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQ 368
           D   +     +  G +  G V  + ++GAFV +   DG      LVH+SE+S + V   +
Sbjct: 181 DVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDG------LVHVSELSHEHVDSPE 234

Query: 369 DFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
           D ++ G  V V V +V+ +  RI LSI+     P
Sbjct: 235 DVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTP 268



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 287
           VG  V VKV    +  +++  S KD   + + S   Q     + +G V  + ++GAFV +
Sbjct: 239 VGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEI 298

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR-QLEE 464
                   + GLVHISE++ + +    + L  G  V V ++ +D E  RI LSI+  L +
Sbjct: 299 A-----PGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPK 353

Query: 465 DPLLETLD 488
           + ++E+ D
Sbjct: 354 EDVVESDD 361

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>TEX_BORPE (Q45388) Protein tex|
          Length = 791

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G + +G+V +V ++GAFV     D   H  GLVHIS ++   V+D +D +  G TV V V
Sbjct: 670 GMVLEGVVTNVANFGAFV-----DIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKV 724

Query: 408 VNVDAEKSRIGLSIR 452
           + VD  + R+ L++R
Sbjct: 725 LEVDVARKRVALTMR 739

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>PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 701

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 34/83 (40%), Positives = 52/83 (62%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           +++ +IG IY G V  +  +GAFV++  P  +    GLVHIS +S   V+ V D L EG 
Sbjct: 617 TAEAEIGKIYVGKVERIVDFGAFVNI-LPGKD----GLVHISMLSDARVEKVTDILKEGQ 671

Query: 390 TVKVIVVNVDAEKSRIGLSIRQL 458
            V+V+V++VD  + RI LSI+ +
Sbjct: 672 EVEVLVLDVD-NRGRIKLSIKDV 693

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>IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 29/79 (36%), Positives = 45/79 (56%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G +    V  V +YGAF+ L    G     G +HISEV+   V++++D+L EG  V   V
Sbjct: 12  GELVVATVKRVHNYGAFLDLDEYPGK---EGFMHISEVASTWVKNIRDYLREGQKVVAKV 68

Query: 408 VNVDAEKSRIGLSIRQLEE 464
           + VD +K  I LS+R++ +
Sbjct: 69  IRVDPKKGHIDLSLRRVTQ 87

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>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 35/109 (32%), Positives = 57/109 (52%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           ++++++G +Y G V  +  +GAFV +          GLVHIS+++   V+ V D+L  G 
Sbjct: 616 TAEIEVGRVYTGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVEKVTDYLQMGQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAA 536
            V V V+ VD  + RI LSI++  E             +P  +P+A AA
Sbjct: 671 EVPVKVLEVD-RQGRIRLSIKEATEQS-----------QPAAAPEAPAA 707

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>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 28/84 (33%), Positives = 49/84 (58%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           ++++++G IY G V  +  +GAF+ +          GLVHIS++S   V+ V D LT   
Sbjct: 616 TAEIEVGRIYSGKVTRIVDFGAFISIGIGK-----EGLVHISQISNKRVEKVSDHLTVDQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIRQLE 461
            + V V+ +D  + R+ LSI+++E
Sbjct: 671 IISVKVLEID-RQGRLRLSIKEVE 693

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>IF2A_HALMA (Q5UX22) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 50/95 (52%)
 Frame = +3

Query: 207 YSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEG 386
           YS   + G +  G +  +  +G FV L   +G     GL HISEV+   +++V+D + EG
Sbjct: 3   YSGWPEPGELVVGKIDEIEDFGVFVDLDEYEGK---RGLCHISEVASGWIKNVRDHVNEG 59

Query: 387 DTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 491
            TV   V++VD    +I LSI+ + +    E + +
Sbjct: 60  QTVVAKVLDVDESAQQIDLSIKDVNDHQRKEKIQE 94

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>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 37/111 (33%), Positives = 61/111 (54%)
 Frame = +3

Query: 126 SVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 305
           +V +  V++N A+  +   E+  +      +V+ G IY G V  +  +GAFV +    GN
Sbjct: 593 TVKIAAVDSNAAKNVMGRIEEIVA------EVEAGVIYKGKVTRLADFGAFVAIV---GN 643

Query: 306 YHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQL 458
               GLVHIS+++ + V+ V D+L  G  V V VV +D  + RI L+++ L
Sbjct: 644 KE--GLVHISQIAEERVEKVSDYLQVGQEVNVKVVEID-RQGRIRLTMKDL 691

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>IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = +3

Query: 249 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 428
           V ++  YGAF+ L    G     G +HISEV+   V++++D+L EG  +   V+ VD EK
Sbjct: 19  VKNIHPYGAFLTLDEYPGK---EGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEK 75

Query: 429 SRIGLSIRQLEE 464
             I LS++++ +
Sbjct: 76  GHIDLSLKRVNQ 87

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>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G I  G V  V  +GAFV L   +G     G+VHISEV+   ++D+++ + +G  V   V
Sbjct: 17  GEIVIGTVKRVLDFGAFVSLDEYEGR---EGMVHISEVASGWIKDIREHVKKGQKVICKV 73

Query: 408 VNVDAEKSRIGLSIRQLEEDPLLETLDK 491
           ++V+ ++  I LSI+ + E    E L +
Sbjct: 74  LDVNPKRGHIDLSIKDVNERQRREKLQQ 101

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>IF2A_METTH (O27363) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 262

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 44/80 (55%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G +  G V  V +YGAF  L+   G       +HISEVS   V++++DF+ E   +   V
Sbjct: 15  GELVVGTVHKVLNYGAFATLEEYPGK---EAFIHISEVSSGWVKNIRDFVRENQKIVARV 71

Query: 408 VNVDAEKSRIGLSIRQLEED 467
           + V+  K  + +S++++ ED
Sbjct: 72  LRVNPRKGHVDVSMKRIRED 91

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>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 30/79 (37%), Positives = 43/79 (54%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G I  G V  V  YGAFV L    G     G++HISEV+   V++++D +  G  V   V
Sbjct: 12  GDIVIGTVKDVKPYGAFVELLEYPGK---EGMIHISEVTSGWVKNIRDHVKVGQRVVAKV 68

Query: 408 VNVDAEKSRIGLSIRQLEE 464
           + VD  K  I LS++++ E
Sbjct: 69  LRVDERKGHIDLSLKRVTE 87

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>IF2A_PYRHO (O58655) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +3

Query: 249 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 428
           V  + +YGAF+ L    G       +HISEV+   V++++D+L EG  V   V+ VD  K
Sbjct: 19  VKRIHNYGAFLELDEYPGK---EAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRK 75

Query: 429 SRIGLSIRQLEE 464
             I LS+R++ +
Sbjct: 76  GHIDLSLRRVTQ 87

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>IF2A_PYRAB (Q9V0E4) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +3

Query: 249 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 428
           V  + +YGAF+ L    G       +HISEV+   V++++D+L EG  V   V+ VD  K
Sbjct: 19  VKRIHNYGAFLELDEYPGK---EAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRK 75

Query: 429 SRIGLSIRQLEE 464
             I LS+R++ +
Sbjct: 76  GHIDLSLRRVTQ 87

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>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 745

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
 Frame = +3

Query: 96  QDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS-----------------QVK 224
           +D  KD++G    + + E  E     +    D + S+Y+S                 + +
Sbjct: 563 KDKIKDIIGPGGKI-IKEICETSNAKIDISDDGTVSIYASDRDKIKIALDKIKAIAVEPE 621

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
           IG I++G V  V   GAF++     GN    G VHISE+S   +  V   L +GD VKV 
Sbjct: 622 IGEIFNGTVMKVLDSGAFINYL---GNKD--GFVHISEISDARIDKVSSVLKQGDIVKVK 676

Query: 405 VVNVDAEKSRIGLSIRQLEED 467
           ++  D  K +  L+I+   +D
Sbjct: 677 LIGFD-NKGKAKLTIKNAYKD 696

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>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           ++++++G IY G V  +  +GAFV +          GLVHIS+++   V+ V D+L  G 
Sbjct: 616 TAEIEVGRIYAGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVEKVADYLQVGQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIRQ 455
              V V+ +D  + R+ LSI++
Sbjct: 671 ETSVKVLEID-RQGRVRLSIKE 691

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>IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHL-QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 404
           G +  G V  +  +G FV L Q+ D      GLVH+SEV+   +++V+D + E  TV   
Sbjct: 10  GELVVGKVDDIEDFGVFVDLEQYQDKR----GLVHVSEVASGWIKNVRDHVNEDQTVVAK 65

Query: 405 VVNVDAEKSRIGLSIRQLEEDPLLETLDK 491
           V+ VD    +I LS++ + +    +T+ +
Sbjct: 66  VLGVDESAQQIDLSLKDVNDHQHSDTIQE 94

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>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 48/88 (54%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           ++++++G IY G V  +  +GAFV +          GLVHIS++S   V  V + L    
Sbjct: 616 TAEIEVGRIYSGKVTRIVDFGAFVSIGLGK-----EGLVHISQISDKRVDKVSNHLKIDQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIRQLEEDPL 473
            + V V+ +D  + R+ LSI++++   L
Sbjct: 671 IISVKVLEID-RQGRLRLSIKEIDSSIL 697

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>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 46/82 (56%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           ++++++  IY G V  +  +GAFV +          GLVHIS+++   V  V D+L  G 
Sbjct: 616 TAEIEVNRIYAGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVDKVTDYLQMGQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIRQ 455
            V V V+ VD  + RI LS+++
Sbjct: 671 EVPVKVIEVD-RQGRIRLSMKE 691

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>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
           protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +3

Query: 225 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD-LVQDVQDFLTEGDTVKV 401
           IG IY+G V S+  +G FV L+     +   GLVHISE+  +  V +V D +++G  VKV
Sbjct: 264 IGDIYNGKVTSIMQFGCFVQLEGLRKRWE--GLVHISELRREGRVANVADVVSKGQRVKV 321

Query: 402 IVVNVDAEKSRIGLSIRQLEED 467
            V++    K+   LS++ ++++
Sbjct: 322 KVLSFTGTKT--SLSMKDVDQE 341

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>IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 407
           G I    V  V  +GAFV L    G   + G +HISEV+   V++++D++ EG  V   V
Sbjct: 12  GEIVMATVERVEDHGAFVTLDEYPG---VDGYIHISEVASGWVKNIRDYVKEGQKVVAKV 68

Query: 408 VNVDAEKSRIGLSIRQLEEDPLLETL 485
           + V+ ++    LS+R++ +    E L
Sbjct: 69  IRVNPKRKYANLSLRKVTDHQRKEKL 94

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>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +3

Query: 231 GIYDGIVGSVFHYGAFVHLQFPDGNYHLT-GLVHISEVSWD-LVQDVQDFLTEGDTVKVI 404
           GIY G+V  +  +GAFV L   DG    T GLVHIS +  +  +    + ++ G  V V 
Sbjct: 208 GIYSGVVSGIKDFGAFVTL---DGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVK 264

Query: 405 VVNVDAEKSRIGLSIRQLEE 464
           V+ +D    RI LS++++ +
Sbjct: 265 VIRIDESAKRISLSMKEVNQ 284

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>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 28/77 (36%), Positives = 46/77 (59%)
 Frame = +3

Query: 216 QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTV 395
           +V++G +Y G V  +  +GAFV + F   +    GLVHISE++ + V  V+D +  GD +
Sbjct: 618 EVEVGQLYLGKVKRIEKFGAFVEI-FSGKD----GLVHISELALERVGKVEDVVKIGDEI 672

Query: 396 KVIVVNVDAEKSRIGLS 446
            V V  +D ++ R+ LS
Sbjct: 673 LVKVTEID-KQGRVNLS 688

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>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/81 (33%), Positives = 44/81 (54%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 389
           +++V++G +Y G V  +  +GAFV +          GLVHIS+++   V  V D L    
Sbjct: 616 TAEVEVGSVYTGKVTRIVDFGAFVSIGIGK-----EGLVHISQIAHKRVDKVSDHLRLHQ 670

Query: 390 TVKVIVVNVDAEKSRIGLSIR 452
            + V V+ VD  + R+ LSI+
Sbjct: 671 EIFVKVLEVD-RQGRLRLSIK 690

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>RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 726

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
 Frame = +3

Query: 39  VPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYS-S 215
           + N LL   +  K     + +VTK  +G   S+    A+EA + ++       W      
Sbjct: 586 IKNLLLKEKNLSKYHLYNLNEVTK--IGLHCSMTERRADEATRDVL------DWLKCDFM 637

Query: 216 QVKIGGIYDGIVGSVFHYGAFVHLQ--FPDGNYHLTGLV----HISEVSWDLV-QDVQDF 374
           Q KIG +  G++ +V  +G FV L   F DG  H+  L+    +   +   L+ +  ++ 
Sbjct: 638 QKKIGDVLTGVISNVTSFGFFVRLNQFFIDGLVHIATLIDDYYYFDSIGLKLIGKSSKNT 697

Query: 375 LTEGDTVKVIVVNVDAEKSRIGLSI 449
              GDT+KV V++V+  + +I LS+
Sbjct: 698 YCLGDTLKVKVISVNLNERKIELSL 722

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>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
           (EC 3.6.1.-)
          Length = 1145

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 36/148 (24%), Positives = 65/148 (43%)
 Frame = +3

Query: 21  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASW 200
           N MQ  + N  +   +    P  P+      ++ S+     +EA   E+       D S 
Sbjct: 118 NLMQSGLDNETIFKIYQIASP--PVMKEEVSVLPSTKIPAKIEAKIEEEVQKIESLDPSP 175

Query: 201 SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLT 380
            L+        +Y+G V ++  +G FV + F     +  GLVHISE+S     D  D + 
Sbjct: 176 VLHK-------VYEGKVRNITTFGCFVQI-FGTRMKNCDGLVHISEMSDQRTLDPHDVVR 227

Query: 381 EGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           +G  + V V+ +     +I LS++ +++
Sbjct: 228 QGQHIFVEVIKIQ-NNGKISLSMKNIDQ 254

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>IF2A_THEVO (Q97BP2) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 254

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = +3

Query: 318 GLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           G +HISEV+   V+ ++ +L EG  V   V+NV+ E+  + LS++++ +
Sbjct: 37  GYIHISEVATGWVKHIRSYLREGQRVVCKVINVNQERKNVDLSLKRVNQ 85

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>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)|
          Length = 1871

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
 Frame = +3

Query: 3   GLILKYNS-MQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 179
           G+++K    M+G VP P+       K+P++      K  +G  V  +V+  +   KKL+ 
Sbjct: 467 GMLVKVGEQMRGLVP-PMHLADILMKNPEK------KYHIGDEVKCRVLLCDPEAKKLMM 519

Query: 180 SEKDASWSLYSSQVKIGGIY---------DGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 332
           + K    +L  S++ +   Y          G +  V  YG  V         ++ GLV  
Sbjct: 520 TLKK---TLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFY-----NNVQGLVPK 571

Query: 333 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
            E+S + + D +     G  VKV+V+N +  K R+ LS + L  DP
Sbjct: 572 HELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK-LSSDP 616

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>RNR_HAEIN (P44907) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 782

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
 Frame = +3

Query: 111 DLVGSSVSVKVVEANEAEKKLVFSEKDASW-SLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           DL+G+  S+    A++A +++      A W      Q  +GG + G++ SV  +G FV L
Sbjct: 617 DLLGNHCSMTERRADDATREV------ADWLKCEYMQDHVGGEFSGVISSVTGFGLFVRL 670

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ---DVQDFLTE--------GDTVKVIVVNVDAEKSR 434
                +  + GLVHIS +  D  Q     Q  + E        GD V++ V  V  E   
Sbjct: 671 D----DLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKM 726

Query: 435 IGLSIRQLEEDP 470
           +  S+   E  P
Sbjct: 727 VDFSLIGSERKP 738

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>RNR_BUCAI (P57628) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 731

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
 Frame = +3

Query: 117 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVK-IGGIYDGIVGSVFHYGAFVHLQF 293
           +G+  S+    A+EA + ++       W       K IG I +G++ +V  +G FV L  
Sbjct: 615 IGAHCSITERRADEANRDVI------DWLKCDFMYKKIGCILNGVISNVTTFGFFVRL-- 666

Query: 294 PDGNYHLTGLVHISEVSWD-----------LVQDVQDFLTEGDTVKVIVVNVDAEKSRIG 440
               + + GLVHI+ ++ D           + +  ++    GD +KV V++V+  + +I 
Sbjct: 667 --NQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNEKKIE 724

Query: 441 LSI 449
           LS+
Sbjct: 725 LSL 727

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>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 29/104 (27%), Positives = 50/104 (48%)
 Frame = +3

Query: 234 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 413
           +Y G V  V   G FV      G     GLVH+S+++   V   ++F+     V V V++
Sbjct: 216 VYKGRVTRVMDAGCFVQFDKFRGK---EGLVHVSQMATRRVDKAKEFVKRDMEVYVKVIS 272

Query: 414 VDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSP 545
           + ++K    LS+R ++++    T   +IPL      D  + S+P
Sbjct: 273 ISSDK--YSLSMRDVDQN----TGRDLIPLRKPSDEDDSSRSNP 310

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>IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 254

 Score = 37.0 bits (84), Expect = 0.039
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = +3

Query: 318 GLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 464
           G +HISEV+   V+ ++ +L EG  V   V+ V+ E+  + LS++++ +
Sbjct: 37  GYIHISEVATGWVKHIRSYLREGQRVVCKVIGVNPERKVVDLSLKRVNQ 85

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>RNR_BACSU (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 779

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = +3

Query: 222 KIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQ-DVQDF-------- 374
           KIG  +DG++ SV ++G FV L        + GLVH+S ++ D  + D Q F        
Sbjct: 626 KIGEEFDGMISSVTNFGMFVELP-----NTIEGLVHVSFMTDDYYRFDEQHFAMIGERTG 680

Query: 375 --LTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 470
                GD + V VV+V+ ++  I   I  ++  P
Sbjct: 681 NVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTP 714

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>RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 835

 Score = 35.8 bits (81), Expect = 0.087
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
 Frame = +3

Query: 111 DLVGSSVSVKVVEANEAEKKLVFSEKDASW-SLYSSQVKIGGIYDGIVGSVFHYGAFVHL 287
           D  G   S+    A++A +++      A W      Q  +G   +G++ +V  +G FV L
Sbjct: 618 DFYGEQCSMTERRADDATREV------ADWLKCEYMQDHVGDELEGVIANVTSFGFFVRL 671

Query: 288 QFPDGNYHLTGLVHISEVSWDLVQ-----------DVQDFLTEGDTVKVIVVNVDAEKSR 434
                + H+ GLVHIS ++ D  Q              +    GD VKV V+ V+ +  +
Sbjct: 672 T----DLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNLDDKQ 727

Query: 435 IGLSI 449
           I   +
Sbjct: 728 IDFEL 732

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>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)|
          Length = 1161

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 381 RLENLGHLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTM 202
           RL+ L    + P + Q+  + Q      Q+   +Q        QQ HH +H  LL+ + M
Sbjct: 447 RLQQLHLQHRHPHQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQHHHHHHHHLLQDAYM 501

Query: 201 TNW-HPSQRRQAF---FLPHSLQRP 139
             + H +Q++Q     FL HS+ +P
Sbjct: 502 QQYQHATQQQQMLQQQFLMHSVYQP 526

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>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -1

Query: 363 HLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTMTNWHPS 184
           H  Q  ++PQ + + Q     HQ++  +Q HH     QQ H +     L++    +    
Sbjct: 139 HHQQQQQQPQHHQQMQ-QQQHHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQQQQ 197

Query: 183 QRRQAFFLPHSLQRP*QKQRN 121
           Q++Q     H  Q+  Q+Q +
Sbjct: 198 QQQQHQQQHHQQQQQQQQQHH 218



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -1

Query: 354 QDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHH------RYHQSLLEKSTMTNW 193
           Q  ++ Q + + Q     HQ++  +Q HH     QQ HH      ++HQ +       + 
Sbjct: 132 QQNQQQQHHQQQQQQPQHHQQMQQQQ-HHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQ 190

Query: 192 HPSQRRQ 172
           H  Q++Q
Sbjct: 191 HQHQQQQ 197

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>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +3

Query: 117  VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFP 296
            +G S+++KV E +  +K     ++ + W+++ + V        +VG + + G F    F 
Sbjct: 6620 IGGSIAIKVTEYSWNKKLYELVQRFSFWTMFCTSVNTSSSEAFVVG-INYLGDFAQGPFI 6678

Query: 297  DGNYHLTGLVHISEVSW 347
            DGN     ++H + V W
Sbjct: 6679 DGN-----IIHANYVFW 6690

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>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
 Frame = +3

Query: 129  VSVKVVEANEAEK---KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFV---HLQ 290
            + V VVE ++  +   +L   ++ +     +SQ+K  G        V  Y  F     + 
Sbjct: 1314 IRVAVVEYHDGSRAYLELKARKRPSELRRITSQIKYTGSQVASTSEVLKYTLFQIFGKID 1373

Query: 291  FPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVD----AEKSRIGLSIRQL 458
             P+ + H+T L+  S+    + +++  ++      KVIV+ V     A   +I L  +Q 
Sbjct: 1374 RPEAS-HITLLLTASQEPPRMARNLVRYVQGLKKKKVIVIPVGIGPHASLKQIRLIEKQA 1432

Query: 459  EE---------DPLLETLDKIIPLEPDLSPDAEAASSPPEI 554
             E         D L +  D+I+    DL+P+A A + PP++
Sbjct: 1433 PENKAFLLSGVDELEQRRDEIVSYLCDLAPEAPAPTQPPQV 1473

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>PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 735

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 13/54 (24%)
 Frame = +3

Query: 225 IGGIYDGIVGSVFHYGAFVHLQ---------FPDG----NYHLTGLVHISEVSW 347
           +G ++  +V ++F +  ++HLQ         F D     N+HL+GL  +S ++W
Sbjct: 138 VGSVFLALVSAIFLFAGWLHLQPNFQPSLSWFKDAESRLNHHLSGLFGVSSLAW 191

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>RNR_VIBCH (Q9KNY1) Ribonuclease R (EC 3.1.-.-) (RNase R)|
          Length = 821

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
 Frame = +3

Query: 216 QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD-----------LVQD 362
           Q  +G   +G+V +V  +G FV L       H+ GLVHIS ++ D           + + 
Sbjct: 648 QDHVGEELEGVVANVTSFGFFVRLT----ELHIDGLVHISTLANDYYHYDPIGQRLVGES 703

Query: 363 VQDFLTEGDTVKVIVVNVDAEKSRIGLSI 449
                  GD VKV V+ V+ +  +I   +
Sbjct: 704 FGAIYRLGDAVKVKVLAVNLDDRQIDFEL 732

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>PSAB_CHLMO (P36492) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 735

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
 Frame = +3

Query: 228 GGIYDGIVGSVFHYGAFVHLQ---------FPDG----NYHLTGLVHISEVSW 347
           G ++  +V +VF +  ++HLQ         F D     N+HL+GL  +S ++W
Sbjct: 139 GSVFLALVSAVFLFAGWLHLQPNFQPSLSWFKDAESRLNHHLSGLFGVSSLAW 191

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>Y1198_METJA (Q58598) Hypothetical protein MJ1198|
          Length = 761

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = +3

Query: 219 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 398
           V+ G  Y G+V  +  YGAF++L     N  + GL+       D++    + L  GD + 
Sbjct: 132 VEPGKFYKGVVTRIEKYGAFINL-----NEQVRGLLR----PRDMISLRLENLNVGDEII 182

Query: 399 VIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPL 503
           V  ++V  EK  I      L    L++  +K +PL
Sbjct: 183 VQAIDVRPEKREIDFKYIPLTTYDLVK-YEKEVPL 216

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>NO40_MOUSE (Q9ESX4) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC|
           domain-containing protein 7) (Putative S1 RNA-binding
           domain protein) (PS1D protein)
          Length = 241

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +3

Query: 234 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 413
           I+ G V  V  YGAF+ +          GLVH + +S   V    + +  GD V V ++ 
Sbjct: 18  IFQGEVAMVTDYGAFIKIP----GCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 73

Query: 414 VDAEKSRIGLSI 449
            + +  RI +S+
Sbjct: 74  REMKNDRIKVSL 85

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>NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC|
           domain-containing protein 7) (Putative S1 RNA binding
           domain protein) (PS1D protein) (Pnn-interacting
           nucleolar protein)
          Length = 241

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +3

Query: 234 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 413
           I+ G V  V  YGAF+ +          GLVH + +S   V    + +  GD V V ++ 
Sbjct: 18  IFQGEVAMVTDYGAFIKIP----GCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 73

Query: 414 VDAEKSRIGLSI 449
            + +  RI +S+
Sbjct: 74  REMKNDRIKVSL 85

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>DNAJ1_NOCFA (Q5YZX0) Chaperone protein dnaJ 1|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 227 NLYLRRVQ*PTGILLREDKLFFCLIRFNDLDRNRGTY*VLCNILNGPFRIFTP 69
           +LY+  V+ P  + +R+     C IR   +D   GT  V+  IL+GP  +  P
Sbjct: 249 DLYVEIVEQPHDVFVRDGDDLHCTIRVPMVDAALGTTVVIDTILDGPTELTIP 301

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>DXS_CAMJE (Q9PIH8) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 615

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +3

Query: 135 VKVVEANEAEKKLV--FSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNY 308
           + ++ A   +++L+   ++K   W ++S  VKIGGI   I   +  Y   +H++     Y
Sbjct: 525 IDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINNFLQKYD--LHVKVVSFEY 582

Query: 309 HLTGLVH--ISEVSWDLVQDVQDFLTE 383
               + H   SEV  +L +DV   LT+
Sbjct: 583 EDKFIEHGKTSEVEKNLEKDVNSLLTK 609

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>FLHA_SALTY (P40729) Flagellar biosynthesis protein flhA|
          Length = 692

 Score = 26.6 bits (57), Expect(2) = 3.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 226 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 345
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69



 Score = 22.3 bits (46), Expect(2) = 3.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 395 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 478
           +GH+G    G++ + F +  +GG  + G
Sbjct: 99  EGHTGAAAAGKVVEAFGHFLVGGNFAIG 126

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>FLHA_ECOLI (P76298) Flagellar biosynthesis protein flhA|
          Length = 692

 Score = 26.6 bits (57), Expect(2) = 3.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 226 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 345
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69



 Score = 22.3 bits (46), Expect(2) = 3.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 395 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 478
           +GH+G    G++ + F +  +GG  + G
Sbjct: 99  EGHTGAAAAGKVVEAFGHFLVGGNFAIG 126

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>GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)
          Length = 728

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
 Frame = +3

Query: 285 LQFPDGNY--HLT---GLVHISEVSWDLVQDVQ-DFLTEGDTVKVIVVNVDAEKSRIGLS 446
           L +PD     HL    G+  + E+ W+  +  + D +  GD ++ +VVN   ++ ++ LS
Sbjct: 10  LDWPDAKQQAHLVRAWGIKQLLEI-WNKAKGKERDAMLWGDEIEYLVVNYSKDEPKVLLS 68

Query: 447 IRQLEEDPLLETL--DKIIPLEPDLSPDAEAASSPPEIEL 560
           +RQ +   +L+ L   K + +  D +P  EA +    + L
Sbjct: 69  LRQAD---ILKALADSKTLKVTGDCAPGTEANADAGNVTL 105

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>CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP|
            acetyl-glucosaminyl transferase 3) (Class-IV chitin
            synthase 3)
          Length = 1165

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 200  VIVLFSSKDWWYL*WNCWF--SVPLWCICSPAIS*WKLSS-HWSRT 328
            +IV+ ++  W YL W C +  ++P+W    P+ + WK     W  T
Sbjct: 1072 LIVVITATRWSYLWWMCVYICALPIWNFVLPSYAYWKFDDFSWGDT 1117

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>RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 721

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +3

Query: 147 EANEAEKKLVFSEKDASWSLYSSQVK--IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTG 320
           E+N+ E   V +E+D + + ++  +   IG  + G+V +V  +G FV L+       + G
Sbjct: 610 ESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFVELE-----NTIEG 664

Query: 321 LVHISEVSWDLVQDVQDFLTEGDTV 395
           L+ I     +L  D  DF+ E  T+
Sbjct: 665 LIRIK----NLKDDFYDFIPENMTL 685

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>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 324 RDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTMTNWHPSQRRQAFFLPHSLQ 145
           + Q  D+ HQ+   +Q H      QQFH  + Q          +H   ++Q  F  H  Q
Sbjct: 298 QQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQK-------QQFHDHHQQQQQFHDHHQQ 350

Query: 144 RP*QKQR 124
           +  Q+Q+
Sbjct: 351 QQQQQQQ 357

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>PSAB_MASLA (O52475) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
          Length = 742

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
 Frame = +3

Query: 210 SSQVKIGGIYDGIVGSVFHYGAFVHLQ-------------FPDGNYHLTGLVHISEVSW 347
           ++ + +G ++  I+ SVF +  ++HLQ              P  N+HL GL  +S ++W
Sbjct: 131 NNDLYMGAVFLLILASVFLFAGWLHLQPKFRPSLSWFKSAEPRLNHHLAGLFGVSSLAW 189

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = -1

Query: 387  HLRLENL-GHLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEK 211
            H++ + L G   Q    PQ  +  Q     HQ    +Q H+   LNQQ H + H +  + 
Sbjct: 3847 HMQQQQLHGQSQQITSAPQHQMHQQ-----HQAQQQQQHHNQQHLNQQLHAQQHPTQKQH 3901

Query: 210  STMTNWHPSQRRQAFFLPHSLQRP*QKQRNLLGPL*H 100
                 ++   ++      H +Q+  Q Q+  L    H
Sbjct: 3902 QAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3938

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>FLHA_PROMI (Q51910) Flagellar biosynthesis protein flhA|
          Length = 696

 Score = 25.4 bits (54), Expect(2) = 7.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 226 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 345
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPPFLLDLLFTFNIALSIMVLLVAMFTRRTL 69



 Score = 22.3 bits (46), Expect(2) = 7.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 478
           +GH+G    G + + F +  +GG  + G
Sbjct: 99  EGHTGSAAAGRVVEAFGHFLVGGNFAIG 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,408,961
Number of Sequences: 219361
Number of extensions: 1767700
Number of successful extensions: 5779
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 5412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5700
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result