| Clone Name | baal9m22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 139 bits (70), Expect = 7e-30 Identities = 120/137 (87%) Strand = Plus / Plus Query: 3 tcactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcga 62 |||||||| |||||||||||||||||| |||||||||||||| ||||| || | || Sbjct: 66492 tcactttgtcaagatcttccctggggtcgagcatggatggaccgtaagatacaaggatga 66551 Query: 63 agatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaa 122 ||||| |||||||| |||||||||||||| |||||| |||||||||| ||||||||||| Sbjct: 66552 cgatgccgctgctgtcaagagcgccgaggaagccctggcagacatgatcgactggtttaa 66611 Query: 123 caagaacctcaagtgaa 139 |||||||||||||||| Sbjct: 66612 taagaacctcaagtgaa 66628 Score = 121 bits (61), Expect = 2e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 4 cactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcgaa 63 ||||||| ||||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 73026 cactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgat 73085 Query: 64 gatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaac 123 ||||| |||||||| |||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 73086 gatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaat 73145 Query: 124 aagaacctcaagtgaa 139 |||||||| ||||||| Sbjct: 73146 aagaacctgaagtgaa 73161
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 139 bits (70), Expect = 7e-30 Identities = 120/137 (87%) Strand = Plus / Plus Query: 3 tcactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcga 62 |||||||| |||||||||||||||||| |||||||||||||| ||||| || | || Sbjct: 19262417 tcactttgtcaagatcttccctggggtcgagcatggatggaccgtaagatacaaggatga 19262476 Query: 63 agatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaa 122 ||||| |||||||| |||||||||||||| |||||| |||||||||| ||||||||||| Sbjct: 19262477 cgatgccgctgctgtcaagagcgccgaggaagccctggcagacatgatcgactggtttaa 19262536 Query: 123 caagaacctcaagtgaa 139 |||||||||||||||| Sbjct: 19262537 taagaacctcaagtgaa 19262553 Score = 121 bits (61), Expect = 2e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 4 cactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcgaa 63 ||||||| ||||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 19268951 cactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgat 19269010 Query: 64 gatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaac 123 ||||| |||||||| |||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 19269011 gatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaat 19269070 Query: 124 aagaacctcaagtgaa 139 |||||||| ||||||| Sbjct: 19269071 aagaacctgaagtgaa 19269086
>dbj|AK060876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A04, full insert sequence Length = 1014 Score = 121 bits (61), Expect = 2e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 4 cactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcgaa 63 ||||||| ||||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 621 cactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgat 680 Query: 64 gatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaac 123 ||||| |||||||| |||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 681 gatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaat 740 Query: 124 aagaacctcaagtgaa 139 |||||||| ||||||| Sbjct: 741 aagaacctgaagtgaa 756
>dbj|AK101551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O15, full insert sequence Length = 1127 Score = 117 bits (59), Expect = 3e-23 Identities = 115/134 (85%) Strand = Plus / Plus Query: 4 cactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcgaa 63 ||||||| ||||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 805 cactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgat 864 Query: 64 gatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaac 123 ||||| |||||||| |||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 865 gatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaat 924 Query: 124 aagaacctcaagtg 137 |||||||| ||||| Sbjct: 925 aagaacctgaagtg 938
>dbj|AK073623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N15, full insert sequence Length = 1127 Score = 117 bits (59), Expect = 3e-23 Identities = 115/134 (85%) Strand = Plus / Plus Query: 4 cactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcgaa 63 ||||||| ||||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 805 cactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgat 864 Query: 64 gatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaac 123 ||||| |||||||| |||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 865 gatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaat 924 Query: 124 aagaacctcaagtg 137 |||||||| ||||| Sbjct: 925 aagaacctgaagtg 938
>gb|BT016986.1| Zea mays clone EK07D2304D04.c mRNA sequence Length = 1139 Score = 46.1 bits (23), Expect = 0.081 Identities = 109/138 (78%) Strand = Plus / Plus Query: 3 tcactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcga 62 |||||| | |||| |||||||||| || | ||||| |||| ||||||||| | ||| Sbjct: 777 tcacttcgtcaaggtcttccctggcgtggcgcatgggtggagcgtgagatacagcctcga 836 Query: 63 agatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaa 122 ||||| ||||| || |||||||| ||||| ||| | | |||||| | |||||||| || Sbjct: 837 tgatgcagctgccgtgaagagcgctgaggaagcctttgcggacatgctcgactggttcaa 896 Query: 123 caagaacctcaagtgaac 140 ||||||||| || ||||| Sbjct: 897 caagaacctaaaatgaac 914
>emb|Y10983.1|GMP450CP9 Glycine max mRNA for cytochrome P450-like protein, clone CP9 Length = 1818 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 115 tggtttaacaagaacctcaagtg 137 ||||||||||||||||||||||| Sbjct: 1573 tggtttaacaagaacctcaagtg 1551
>gb|AY104092.1| Zea mays PCO081688 mRNA sequence Length = 1359 Score = 46.1 bits (23), Expect = 0.081 Identities = 109/138 (78%) Strand = Plus / Plus Query: 3 tcactttgacaagatcttccctggggtttctcatggatggaccgtgagatataatggcga 62 |||||| | |||| |||||||||| || | ||||| |||| ||||||||| | ||| Sbjct: 908 tcacttcgtcaaggtcttccctggcgtggcgcatgggtggagcgtgagatacagcctcga 967 Query: 63 agatgcggctgctgtaaagagcgccgaggaggccctgacagacatgatngactggtttaa 122 ||||| ||||| || |||||||| ||||| ||| | | |||||| | |||||||| || Sbjct: 968 tgatgcagctgccgtgaagagcgctgaggaagcctttgcggacatgctcgactggttcaa 1027 Query: 123 caagaacctcaagtgaac 140 ||||||||| || ||||| Sbjct: 1028 caagaacctaaaatgaac 1045
>gb|AC102761.12| Mus musculus chromosome 8, clone RP24-227E21, complete sequence Length = 162108 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 318 gcttgtgctgaacactgaactattgt 343 |||| ||||||||||||||||||||| Sbjct: 83691 gcttttgctgaacactgaactattgt 83716
>gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, complete sequence Length = 204191 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ttgtgctaaataaaatgtggt 360 ||||||||||||||||||||| Sbjct: 116687 ttgtgctaaataaaatgtggt 116667
>emb|AL645938.9| Mouse DNA sequence from clone RP23-15E24 on chromosome 1 Contains the 5' end of a novel gene, complete sequence Length = 138851 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ttgtgctaaataaaatgtggt 360 ||||||||||||||||||||| Sbjct: 113710 ttgtgctaaataaaatgtggt 113730
>emb|CR381630.12| Zebrafish DNA sequence from clone CH211-234G24 in linkage group 18, complete sequence Length = 152854 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 gtgctggttggtgtgtgattg 302 ||||||||||||||||||||| Sbjct: 88654 gtgctggttggtgtgtgattg 88634
>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete sequence Length = 216816 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tctgcttgtgctgaacactg 334 |||||||||||||||||||| Sbjct: 91334 tctgcttgtgctgaacactg 91315
>ref|XM_956627.1| Neurospora crassa OR74A hypothetical protein (NCU01108.1) partial mRNA Length = 384 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gatgcggctgctgtaaagagcgccgagg 91 |||||||||||||| |||||||||||| Sbjct: 250 gatgcggctgctgttgagagcgccgagg 277
>ref|XM_326600.1| Neurospora crassa OR74A hypothetical protein (NCU01108.1) partial mRNA Length = 384 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gatgcggctgctgtaaagagcgccgagg 91 |||||||||||||| |||||||||||| Sbjct: 250 gatgcggctgctgttgagagcgccgagg 277
>gb|AE007304.1| Sinorhizobium meliloti 1021 plasmid pSymA section 110 of 121 of the complete plasmid sequence Length = 12461 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 ttccggggtctgcttgtgctgaac 330 ||||||| |||||||||||||||| Sbjct: 8074 ttccgggatctgcttgtgctgaac 8051
>ref|NM_025243.3| Homo sapiens solute carrier family 19, member 3 (SLC19A3), mRNA Length = 3775 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 attgtgctaaataaaatgtg 358 |||||||||||||||||||| Sbjct: 3090 attgtgctaaataaaatgtg 3109
>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete sequence Length = 222316 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tctgcttgtgctgaacactg 334 |||||||||||||||||||| Sbjct: 38349 tctgcttgtgctgaacactg 38330
>gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome 16, complete sequence Length = 140552 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 gctgctgtaaagagcgccgaggag 93 |||| ||||||||||||||||||| Sbjct: 138594 gctgttgtaaagagcgccgaggag 138617
>emb|AL670008.1|NCB13O8 Neurospora crassa DNA linkage group V BAC contig B13O8 Length = 80765 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gatgcggctgctgtaaagagcgccgagg 91 |||||||||||||| |||||||||||| Sbjct: 13929 gatgcggctgctgttgagagcgccgagg 13956
>emb|CR595614.1| full-length cDNA clone CS0DI040YK24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1580 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 attgtgctaaataaaatgtg 358 |||||||||||||||||||| Sbjct: 921 attgtgctaaataaaatgtg 940
>gb|AF283317.1|AF283317 Homo sapiens orphan transporter SLC19A3 (SLC19A3) mRNA, complete cds Length = 3532 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 attgtgctaaataaaatgtg 358 |||||||||||||||||||| Sbjct: 2840 attgtgctaaataaaatgtg 2859
>gb|AC005501.1| Mus musculus Clone pad69, Complete Sequence, complete sequence Length = 12996 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tctgcttgtgctgaacactg 334 |||||||||||||||||||| Sbjct: 5343 tctgcttgtgctgaacactg 5324
>gb|AC122472.5| Mus musculus BAC clone RP24-323G20 from chromosome 10, complete sequence Length = 180612 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccttttgtaataactaataa 176 |||||||||||||||||||| Sbjct: 10464 ccttttgtaataactaataa 10445
>gb|AC064853.6| Homo sapiens BAC clone RP11-185H21 from 2, complete sequence Length = 137247 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 attgtgctaaataaaatgtg 358 |||||||||||||||||||| Sbjct: 103122 attgtgctaaataaaatgtg 103103
>gb|AC096664.1| Homo sapiens BAC clone RP11-240J3 from 2, complete sequence Length = 83996 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 taacaagaacctcaagtgaa 139 |||||||||||||||||||| Sbjct: 76143 taacaagaacctcaagtgaa 76162
>emb|AL928547.12| Mouse DNA sequence from clone RP23-226B16 on chromosome 2, complete sequence Length = 131255 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctaataagcctgtgtcattc 189 |||||||||||||||||||| Sbjct: 10035 ctaataagcctgtgtcattc 10016
>emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chromosome 16, complete sequence Length = 181320 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 gctgctgtaaagagcgccgaggag 93 |||| ||||||||||||||||||| Sbjct: 29721 gctgttgtaaagagcgccgaggag 29744
>gb|AC004386.1|AC004386 Homo Sapiens Chromosome X clone bWXD691, complete sequence Length = 172657 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gggtttatgttatggtgttt 235 |||||||||||||||||||| Sbjct: 110406 gggtttatgttatggtgttt 110387
>gb|AC002418.1|AC002418 Human Chromosome X, complete sequence Length = 128915 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gggtttatgttatggtgttt 235 |||||||||||||||||||| Sbjct: 60297 gggtttatgttatggtgttt 60316
>gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, complete sequence Length = 174202 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccttttgtaataactaataa 176 |||||||||||||||||||| Sbjct: 137239 ccttttgtaataactaataa 137220
>gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152832 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gctaaataaaatgtggtgcc 363 |||||||||||||||||||| Sbjct: 34085 gctaaataaaatgtggtgcc 34104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,892,990 Number of Sequences: 3902068 Number of extensions: 2892990 Number of successful extensions: 46504 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46443 Number of HSP's gapped (non-prelim): 54 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)