ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9m13 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC8_RAT (O54924) Exocyst complex component 8 (Exocyst complex 84 kDa| subunit) Length = 716 Score = 36.6 bits (83), Expect = 0.053 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Frame = +3 Query: 228 EDSTEDTISTIEYQE--LSEIQKWHMDFPDKLDVLLAERRVDEALDALDEAERIAVDAEK 401 ED E+ ++T E +E + +W + P+ LDV +A+R + A+D LD+ D Sbjct: 304 EDEAEEELATPEAEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKP- 362 Query: 402 KQTLATADIVALKGVISDNRQKLSDQLA-EAACQSSTCG--IELRAAASALKRLGDGPRA 572 + + L+ + + ++L++ L E + S G R A S L RLG +A Sbjct: 363 ----SPPSVKELRAKVDERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIRLGQCTKA 418
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 36.2 bits (82), Expect = 0.069 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +3 Query: 162 TESALIHGLSEGIQIDS--LIIGPEDSTEDTISTIEYQELSEIQKWHM-DFPDKLDVLLA 332 TES + G+ G ++ L G DST+DT +E QEL E Q + M ++L L Sbjct: 237 TESEHLEGMEAGQKVHEKRLSNGSIDSTDDTSQIVELQELLEKQNYEMAQMKERLTAL-- 294 Query: 333 ERRVDEALDALDEAERIAVDAEKKQTLATADI 428 RV E + A + + E+ T DI Sbjct: 295 SSRVGEVEQEAETARKDLIKTEEMNTKYQRDI 326
>EXOC8_HUMAN (Q8IYI6) Exocyst complex component 8 (Exocyst complex 84 kDa| subunit) Length = 725 Score = 35.4 bits (80), Expect = 0.12 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Frame = +3 Query: 228 EDSTEDTISTIEYQELSEIQKWHMDFPDKLDVLLAERRVDEALDALDEAERIAVDAEKKQ 407 ++ E + +E +++ +W + P+ LDV +A+R + A+D LD+ D Sbjct: 315 DEEEEPAVPEVEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKP--- 371 Query: 408 TLATADIVALKGVISDNRQKLSDQLA-EAACQSSTCG--IELRAAASALKRLGDGPRA 572 + + L+ + + ++L++ L E + S G R A S L RLG +A Sbjct: 372 --SPPPVKELRAKVEERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIRLGQCTKA 427
>EXOC8_MOUSE (Q6PGF7) Exocyst complex component 8 (Exocyst complex 84 kDa| subunit) Length = 716 Score = 34.7 bits (78), Expect = 0.20 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Frame = +3 Query: 228 EDSTEDTISTIEYQE--LSEIQKWHMDFPDKLDVLLAERRVDEALDALDEAERIAVDAEK 401 ED ++ ++T E +E + +W + P+ LDV +A+R + A+D LD+ D Sbjct: 304 EDEDDEELATPEAEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKP- 362 Query: 402 KQTLATADIVALKGVISDNRQKLSDQLA-EAACQSSTCG--IELRAAASALKRLGDGPRA 572 + + L+ + + ++L++ L E + S G R A S L RLG +A Sbjct: 363 ----SPPPVKELRAKVDERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIRLGQCTKA 418
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 34.3 bits (77), Expect = 0.26 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +3 Query: 162 TESALIHGLSEGIQIDS--LIIGPEDSTEDTISTIEYQELSEIQKWHM-DFPDKLDVLLA 332 TES + G+ G ++ L G DST++T +E QEL E Q + M ++L L Sbjct: 237 TESEHLEGMEPGQKVHEKRLSNGSIDSTDETSQIVELQELLEKQNYEMAQMKERLAAL-- 294 Query: 333 ERRVDEALDALDEAERIAVDAEKKQTLATADI 428 RV E + A + + E+ T DI Sbjct: 295 SSRVGEVEQEAETARKDLIKTEEMNTKYQRDI 326
>MATN3_HUMAN (O15232) Matrilin-3 precursor| Length = 486 Score = 33.5 bits (75), Expect = 0.45 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 16/137 (11%) Frame = +3 Query: 204 IDSLIIGPEDSTEDTISTIEYQELSEIQKWHMDFPDKLDVLLAERRVDEALD-------- 359 ID+L IGP D+ ++ + Y +I+ + DK + A R+ Sbjct: 110 IDTLDIGPADTR---VAVVNYASTVKIEFQLQAYTDKQSLKQAVGRITPLSTGTMSGLAI 166 Query: 360 --ALDEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAEAACQSSTCGIEL--- 524 A+DEA V+A ++ + VA+ +++D R + DQ+ E A ++ GIEL Sbjct: 167 QTAMDEA--FTVEAGAREPSSNIPKVAI--IVTDGRPQ--DQVNEVAARAQASGIELYAV 220 Query: 525 ---RAAASALKRLGDGP 566 RA ++LK + P Sbjct: 221 GVDRADMASLKMMASEP 237
>CING_XENLA (Q9PTD7) Cingulin| Length = 1360 Score = 32.7 bits (73), Expect = 0.76 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Frame = +3 Query: 201 QIDSLIIGPEDSTEDTISTIEYQELSEIQKWHMDFPDKLDVLLAERRVDEALDALDEAER 380 Q+++ + ED D+ +ELS ++ PDKL +L + ++E D LDE + Sbjct: 517 QVETKLRTMEDKLMDS-----KEELSHLRAKGGTSPDKLALL---KELEEVQDELDEVLQ 568 Query: 381 IAVDAEKKQTLATADIVALKGVISD---NRQKLSDQLAE 488 I E+ ++ ALKG + D N K D++ E Sbjct: 569 IRQKQEELLRQKDRELTALKGALKDEVANHDKDLDRVRE 607
>HSLU_WIGBR (Q8D2S7) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 443 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = +3 Query: 339 RVDEALDALDEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAEAACQ--SSTC 512 RV+ + +++ E+I + T + ++A +GVI Q+ ++AEAACQ ST Sbjct: 329 RVELSALTIEDFEKILTEPSASLTKQYSALMATEGVIISFTQEGIKKIAEAACQVNDSTE 388 Query: 513 GIELRAAASALKRL 554 I R + L+RL Sbjct: 389 NIGARRLHTILERL 402
>SYS_BARQU (Q6G036) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 30.8 bits (68), Expect = 2.9 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Frame = +3 Query: 288 KWHMDFPDKLDVLLAERRVDEALDALDEAERIAVDAEKKQTLATADIVALKGVISDNRQK 467 KW ++P+KLD LA+R ++ + L I +D E++ +A + R Sbjct: 5 KWIREYPEKLDEALAKRGIEPQAERL-----IKLDLERRSHVAKVQSA------QERRNA 53 Query: 468 LSDQLAEA-ACQSSTCGIELRAAASALK 548 S ++ +A A T LRA +K Sbjct: 54 ASKEIGQALAACDQTMAEHLRAEVEEIK 81
>RAD50_HALSA (Q9HRW3) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 30.8 bits (68), Expect = 2.9 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 309 DKLDVLLAERRVDEALDALDEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAE 488 D DVL R +E+ AL + E D + A + L +SD+R++ SD E Sbjct: 238 DAADVL---ERYEESRTALADVEETIADVREAVAEAERERETLADRVSDHRERASDLDDE 294 Query: 489 AACQSSTCGIE 521 AA ++ G++ Sbjct: 295 AAALAADLGLD 305
>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)| (Microtubule-binding protein 190) (d-CLIP-190) Length = 1690 Score = 30.4 bits (67), Expect = 3.8 Identities = 21/78 (26%), Positives = 40/78 (51%) Frame = +3 Query: 315 LDVLLAERRVDEALDALDEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAEAA 494 ++ L+ ER +D ++A+ A+ +K A IV L+ + DN +K +++L + Sbjct: 380 VEKLMVERDLDR-----EDAQNQALQLQKNINELKARIVELESAL-DNERKKTEELQCSI 433 Query: 495 CQSSTCGIELRAAASALK 548 ++ CG EL A + K Sbjct: 434 DEAQFCGDELNAQSQVYK 451
>THAP7_MOUSE (Q8VCZ3) THAP domain-containing protein 7| Length = 309 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = +3 Query: 324 LLAERRVDEALDALDEAERIAVDAEKKQTLATADIVAL-------KGVISDNRQKLSDQL 482 LL +RR + ALDALD+ +R ++++ + L K +D RQ L D + Sbjct: 238 LLWKRRAEAALDALDKTQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKDHV 297 Query: 483 AEAACQSST 509 + A Q S+ Sbjct: 298 QDFAMQLSS 306
>THAP7_HUMAN (Q9BT49) THAP domain-containing protein 7| Length = 309 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Frame = +3 Query: 324 LLAERRVDEALDALDEAERIAVDAEKKQTLATADIVAL-------KGVISDNRQKLSDQL 482 LL +RR + ALDALD+A+R ++++ + L K +D RQ L + + Sbjct: 238 LLWKRRAEAALDALDKAQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKEHV 297 Query: 483 AEAACQSST 509 + A Q S+ Sbjct: 298 QDFAMQLSS 306
>GIDA_BACLD (Q65CN2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 628 Score = 30.0 bits (66), Expect = 4.9 Identities = 26/108 (24%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Frame = +3 Query: 186 LSEGIQIDSLIIGPEDSTEDTISTIEYQELSEIQKWHMDFPDKLDVLLA-ERRVDEALDA 362 L +GI+ L+ PE + E T++ + E QK D +++++ + E ++++L Sbjct: 503 LKDGIRATDLMKRPEMNYE-TVTALAPPE----QKVAGDVAEQVEIQIKYEGYIEKSLQQ 557 Query: 363 LDEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAEAACQSS 506 +++ +++ E K+ D A+KG+ ++ RQKL + + Q+S Sbjct: 558 VEKLKKM----ENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQAS 601
>HS104_YEAST (P31539) Heat shock protein 104| Length = 908 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +3 Query: 348 EALDALDEAERIAVDAEKKQTLATADIVALKGV--ISDNRQKLSDQLAE 488 +A LDE E A+DAE++ ATA + + I +KL DQ+AE Sbjct: 478 QAKKKLDELENKALDAERRYDTATAADLRYFAIPDIKKQIEKLEDQVAE 526
>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein zeste-white| 3) Length = 1067 Score = 29.3 bits (64), Expect = 8.4 Identities = 28/108 (25%), Positives = 48/108 (44%) Frame = +3 Query: 186 LSEGIQIDSLIIGPEDSTEDTISTIEYQELSEIQKWHMDFPDKLDVLLAERRVDEALDAL 365 +SE IDS +I +D +D T+ Y + K F K LLA+++ L Sbjct: 343 ISEDPHIDSKLINRKDGLQD---TMYYLDEFGSPKLREKFARKQKQLLAKQQ-----KQL 394 Query: 366 DEAERIAVDAEKKQTLATADIVALKGVISDNRQKLSDQLAEAACQSST 509 + ER + + KK+ A +A G + D+ + D + C +S+ Sbjct: 395 MKRERRSEEQRKKRNTTVASNLAASGAVVDDTK--DDYKQQPHCDTSS 440
>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 984 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = +3 Query: 309 DKLDVLLAERRVDEALDALDEAERIAVDAEKKQTLATADIVALKGV--ISDNRQKLSDQL 482 DK+ ++ AE++ L+ L + + D EKK++ AD AL+ + + + + L +L Sbjct: 668 DKVQLMAAEKKAKAELEELRQRVKELEDKEKKESKKMADEDALRKIRAVEEQIEYLQKKL 727 Query: 483 AEAACQSSTCGIELRAAASALK 548 A A + E+ A + Sbjct: 728 AMAKQEEEALLSEMDVTGQAFE 749 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,055,887 Number of Sequences: 219361 Number of extensions: 1145299 Number of successful extensions: 3525 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3525 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
