>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  131 bits (330), Expect(2) = 3e-49
 Identities = 63/72 (87%), Positives = 66/72 (91%)
 Frame = +3

Query: 120 RAPRXNRFTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHE 299
           ++ + NRFTVMAAENI  KRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHE
Sbjct: 37  KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHE 96

Query: 300 AVLSXYEYVSQG 335
           AVLS YEYVSQG
Sbjct: 97  AVLSSYEYVSQG 108



 Score = 81.6 bits (200), Expect(2) = 3e-49
 Identities = 40/43 (93%), Positives = 41/43 (95%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKGQQ 139
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK  +
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANR 43

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  108 bits (270), Expect(2) = 1e-41
 Identities = 54/73 (73%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
 Frame = +3

Query: 120 RAPRXNRFTVMAAENIXXKR-NTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTH 296
           ++   NRF VMA E    K+ + D+WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTH
Sbjct: 37  KSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTH 96

Query: 297 EAVLSXYEYVSQG 335
           EAVLS YEY+SQG
Sbjct: 97  EAVLSSYEYLSQG 109



 Score = 79.3 bits (194), Expect(2) = 1e-41
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS 127
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS 39

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  102 bits (254), Expect(2) = 3e-34
 Identities = 48/69 (69%), Positives = 57/69 (82%), Gaps = 2/69 (2%)
 Frame = +3

Query: 135 NRFTVMAAENIXXKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 308
           +RF  MAA+ +   + TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVL
Sbjct: 46  SRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVL 105

Query: 309 SXYEYVSQG 335
           S Y+Y+SQG
Sbjct: 106 SSYDYISQG 114



 Score = 60.8 bits (146), Expect(2) = 3e-34
 Identities = 34/42 (80%), Positives = 37/42 (88%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSS 127
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSS 42

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  100 bits (250), Expect(2) = 6e-30
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +3

Query: 180 NTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYEYVSQG 335
           + D+WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LS YEY+SQG
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQG 106



 Score = 47.8 bits (112), Expect(2) = 6e-30
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKGQQV 142
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +    +V
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRV 38

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 5/80 (6%)
 Frame = +3

Query: 111 TMARAPRXNR-----FTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQA 275
           T++R  + N+     F V+A +    + + D+W+GLAYD SDDQQDITRGKG+VDS+FQA
Sbjct: 40  TVSRFAQSNKKSNGSFKVLAVKE-DKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQA 98

Query: 276 PTGDGTHEAVLSXYEYVSQG 335
           P G GTH AVLS YEYVSQG
Sbjct: 99  PMGTGTHHAVLSSYEYVSQG 118

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 41/52 (78%), Positives = 45/52 (86%)
 Frame = +3

Query: 180 NTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYEYVSQG 335
           ++D+WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL  YEYVSQG
Sbjct: 71  DSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQG 122

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 43/64 (67%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
 Frame = +3

Query: 150 MAAENIXXKRNTDK--WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYEY 323
           + A+ I   + TDK  WKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+S Y+Y
Sbjct: 55  IVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDY 114

Query: 324 VSQG 335
           +SQG
Sbjct: 115 ISQG 118

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 43/64 (67%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
 Frame = +3

Query: 150 MAAENIXXKRNTDK--WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYEY 323
           + A+ I   + TDK  WKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+S Y+Y
Sbjct: 55  IVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDY 114

Query: 324 VSQG 335
           +SQG
Sbjct: 115 ISQG 118

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +3

Query: 141 FTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYE 320
           F ++A ++   +   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLS YE
Sbjct: 51  FKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYE 110

Query: 321 YVSQG 335
           Y+S G
Sbjct: 111 YISAG 115

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 44/68 (64%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
 Frame = +3

Query: 141 FTVMAAENI---XXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 311
           F ++AAE       + N D+WKGLAYDISDDQQDITRGKG+VD LFQAP   GTH AV+S
Sbjct: 55  FKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMS 114

Query: 312 XYEYVSQG 335
            YEY+S G
Sbjct: 115 SYEYLSTG 122

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 47/71 (66%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
 Frame = +3

Query: 135 NRFTVMAAE--NIXXKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 302
           NR   +AAE  +   K+ T  D+WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH A
Sbjct: 52  NRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHA 111

Query: 303 VLSXYEYVSQG 335
           VL  YEYVSQG
Sbjct: 112 VLQSYEYVSQG 122

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 39/63 (61%), Positives = 50/63 (79%)
 Frame = +3

Query: 147 VMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSXYEYV 326
           ++A+ +   + + D+WKGLA+D SDDQQDITRGKG VDSLFQAP G GTH A++S YEY+
Sbjct: 56  IVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYI 115

Query: 327 SQG 335
           S G
Sbjct: 116 STG 118

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 82.0 bits (201), Expect(2) = 9e-17
 Identities = 39/66 (59%), Positives = 49/66 (74%)
 Frame = +3

Query: 135 NRFTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSX 314
           NR   + A+ +   +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++ 
Sbjct: 52  NRNLRVVAQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNS 110

Query: 315 YEYVSQ 332
           YEYVSQ
Sbjct: 111 YEYVSQ 116



 Score = 22.3 bits (46), Expect(2) = 9e-17
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
 Frame = +2

Query: 17  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKGQQV 142
           AA  ST+GA +  P              T F GK LKK     V+    S++  +V
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRV 57

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
 Frame = +3

Query: 141 FTVMAAEN-IXXKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 311
           F ++AA+  I   + T  D+W+GLAYD+SDDQQDITRGKG+VDSLFQAP   GTH AV+S
Sbjct: 55  FKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVIS 114

Query: 312 XYEYVSQG 335
            ++Y+S G
Sbjct: 115 SHKYLSAG 122

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 42/69 (60%), Positives = 47/69 (68%)
 Frame = +3

Query: 129 RXNRFTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 308
           R    TV AAEN   ++NTDKW  LA D SDDQ DI RGKG+VDSLFQAP   GTH  + 
Sbjct: 50  RTTSMTVKAAEN--EEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQ 107

Query: 309 SXYEYVSQG 335
           S +EY SQG
Sbjct: 108 SSFEYESQG 116

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
 Frame = +3

Query: 174 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSXYEYVSQ 332
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLS  EY+SQ
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQ 92

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
 Frame = -3

Query: 289 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFXXMFSAAMTV 143
           P+P+ AWK+ S         CW    + E++Y R          ++FL    FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 147 VMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 278
           +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 697 LISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 RNTDKWKGLAYDISDDQQDITRGKGI 254
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71

>AAPP_RHILV (Q52815) General L-amino acid transport ATP-binding protein aapP|
          Length = 257

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 114 MARAPRXNRFTVMAAENIXXKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDG 290
           MA AP   + TV A E      N +KW G  + + D    + RG+ IV      P+G G
Sbjct: 1   MAEAP-AKKLTVSATEVAVEIVNMNKWYGDFHVLRDINLKVMRGERIV---IAGPSGSG 55

>CBID_BRUSU (Q8G018) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 368

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 290
           G+  D  DD  D+T G  I+ +++ AP G G
Sbjct: 74  GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103

>Y504_CHLTR (O84512) Protein CT_504|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 5   TEMAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKGQQ 139
           +E      STV APASTP   + KK +++      +  K  +G++
Sbjct: 116 SEEEVVADSTVAAPASTPVAPMSKKERRKEFKNEKWKDKKKQGRR 160

>CBID_BRUME (Q8YHU3) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 290
           G+  D  DD  D+T G  I+ +++ AP G G
Sbjct: 74  GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103

>LEU2_VIBCH (Q9KP81) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 467

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 35  VGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKGQQV 142
           V AP  TP  ++ + L  +VTS   + G   KG+ V
Sbjct: 18  VAAPGETPILYIDRHLVHEVTSPQAFDGLREKGRPV 53

>TGT_AQUAE (O67331) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 378

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -3

Query: 307 RTASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLSVFLFXXMFSAAMTVNLLXL 128
           RT +W+   + A K E  + F +V   +  ++   R   +   L    F    ++  L +
Sbjct: 170 RTINWLERSIKAKKREDQVLFGIVQGAFWKDL---RKKAVEETLKFDEFLFGYSIGGLSV 226

Query: 127 GALAMVVHGRGHLLLELLPEE 65
           G    +++G   ++ ELLPE+
Sbjct: 227 GEPKEIMYGMTEVVCELLPEK 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,286,769
Number of Sequences: 219361
Number of extensions: 540157
Number of successful extensions: 1832
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)