Clone Name	baal9m02
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	597	e-168
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	561	e-157
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	515	e-143
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	355	6e-95
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	208	8e-51
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	202	5e-49
7	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	174	1e-40
8	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	168	7e-39
9	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	168	7e-39
10	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	168	7e-39
11	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	168	7e-39
12	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	168	7e-39
13	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	168	7e-39
14	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	168	7e-39
15	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	167	3e-38
16	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
17	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	165	1e-37
19	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	165	1e-37
20	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
21	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	165	1e-37
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	121	2e-24
23	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	107	2e-20
24	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	107	2e-20
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	107	2e-20
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	100	6e-18
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	64	3e-07
28	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	7e-05
29	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	54	3e-04
30	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.072
31	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.28
32	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.28
33	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.1
34	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.1
35	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.1
36	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.1
37	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.1
38	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	4.4
39	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	4.4
40	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	4.4
41	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	4.4
42	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	4.4
43	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	4.4
44	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	4.4
45	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	4.4
46	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	4.4
47	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	4.4
48	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	4.4
49	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	4.4
50	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	4.4
51	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	4.4
52	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	4.4
53	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	4.4
54	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	4.4
55	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	4.4
56	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	4.4
57	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	4.4
58	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	4.4
59	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	4.4
60	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	4.4
61	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	4.4
62	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	4.4
63	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	4.4
64	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	4.4
65	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	4.4
66	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	4.4

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  597 bits (301), Expect = e-168
 Identities = 327/336 (97%), Gaps = 1/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 191

                                                                       
Query: 61  caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 251

                                                                       
Query: 121 gagctccaagggncaacaggttcacagtcatggcagcggagaacatcnacnagaagagga 180
           |||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 252 gagctccaagg-ccaacaggttcacagtcatggcagcggagaacatcgacgagaagagga 310

                                                                       
Query: 181 acaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcacca 240
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 311 acaccgacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcacca 370

                                                                       
Query: 241 gagggaagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagggaagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgagg 430

                                               
Query: 301 ccgtcctnagcncctacgagtacgtcagccagggcc 336
           ||||||| ||| ||||||||||||||||||||||||
Sbjct: 431 ccgtcctcagctcctacgagtacgtcagccagggcc 466

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  561 bits (283), Expect = e-157
 Identities = 321/334 (96%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 60
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 52  cagcacagagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgac 111

                                                                       
Query: 61  caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 171

                                                                       
Query: 121 gagctccaagggncaacaggttcacagtcatggcagcggagaacatcnacnagaagagga 180
           |||||||||||  |||||||||||| |||||||||||||| |||||| || |||||||||
Sbjct: 172 gagctccaagg-ccaacaggttcacggtcatggcagcggaaaacatcgacgagaagagga 230

                                                                       
Query: 181 acaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 acaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcacca 290

                                                                       
Query: 241 gagggaagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgagg 300
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 291 gagggaagggcatcgtggactccctcttccaggcgcccactggcgacggcacccacgagg 350

                                             
Query: 301 ccgtcctnagcncctacgagtacgtcagccaggg 334
           ||||||| ||| | ||||||||||||||||||||
Sbjct: 351 ccgtcctcagctcatacgagtacgtcagccaggg 384

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  515 bits (260), Expect = e-143
 Identities = 283/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 106  gaactaccatggcaagagctccaagggncaacaggttcacagtcatggcagcggagaaca 165
            ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaagg-ccaacaggttcacagtcatggcagcggagaaca 5636

                                                                        
Query: 166  tcnacnagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacc 225
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5637 tcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacc 5696

                                                                        
Query: 226  agcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcg 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 5697 agcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggc 5756

                                                               
Query: 286  acggcacccacgaggccgtcctnagcncctacgagtacgtcagccagggcc 336
            |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 5757 acggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcc 5807



 Score =  167 bits (84), Expect = 3e-38
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                        
Query: 191  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 251  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctnag 310
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                      
Query: 311  cncctacgagtacgtcagccagggcc 336
            | ||||||||||| ||||||||||||
Sbjct: 3059 ctcctacgagtacatcagccagggcc 3084



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                           
Query: 1    cagcacagagatggctgctgccttctcctccaccgtcggggctccgg 47
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 cagcacagagatggctgctgccttctcctccaccgtcggggctccgg 5398

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  355 bits (179), Expect = 6e-95
 Identities = 196/203 (96%)
 Strand = Plus / Plus

                                                                       
Query: 134 caacaggttcacagtcatggcagcggagaacatcnacnagaagaggaacaccgacaagtg 193
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 9   caacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtg 68

                                                                       
Query: 194 gaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcat 253
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcat 128

                                                                       
Query: 254 cgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctnagcnc 313
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 129 cgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctc 188

                                  
Query: 314 ctacgagtacgtcagccagggcc 336
           |||||||||||||||||||||||
Sbjct: 189 ctacgagtacgtcagccagggcc 211

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  208 bits (105), Expect = 8e-51
 Identities = 138/148 (93%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 66
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 67  cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 126
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                       
Query: 127 caagggncaacaggttcacagtcatggc 154
           ||| || |||||||||||| ||||||||
Sbjct: 196 caa-ggccaacaggttcaccgtcatggc 222



 Score =  200 bits (101), Expect = 2e-48
 Identities = 138/151 (91%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                          
Query: 306 ctnagcncctacgagtacgtcagccagggcc 336
           || ||| ||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcc 407

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  202 bits (102), Expect = 5e-49
 Identities = 137/148 (92%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 66
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 67  cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 126
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                       
Query: 127 caagggncaacaggttcacagtcatggc 154
           ||| || |||||||||||| ||||||||
Sbjct: 186 caa-ggccaacaggttcaccgtcatggc 212



 Score =  180 bits (91), Expect = 2e-42
 Identities = 135/151 (89%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                          
Query: 306 ctnagcncctacgagtacgtcagccagggcc 336
           || ||| | ||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcc 397

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  174 bits (88), Expect = 1e-40
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                       
Query: 191 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 251 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctnag 310
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                     
Query: 311 cncctacgagtacgtcagccagggcc 336
           | ||||||||||| ||||||||||||
Sbjct: 337 ctcctacgagtacatcagccagggcc 362



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 10  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 69
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 70  cgggaagaagctcaagaagcagg 92
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

            
Query: 129 a 129
           |
Sbjct: 153 a 153



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccaggg 360

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

            
Query: 129 a 129
           |
Sbjct: 145 a 145



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccaggg 352

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

            
Query: 129 a 129
           |
Sbjct: 193 a 193



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccaggg 400

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

            
Query: 129 a 129
           |
Sbjct: 181 a 181



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 246 aagggcatcgtggactcgctcttccaggc 274
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

            
Query: 129 a 129
           |
Sbjct: 182 a 182



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccaggg 389

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

            
Query: 129 a 129
           |
Sbjct: 181 a 181



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccaggg 388

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  168 bits (85), Expect = 7e-39
 Identities = 112/121 (92%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

            
Query: 129 a 129
           |
Sbjct: 180 a 180



 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccaggg 387

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  167 bits (84), Expect = 3e-38
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                       
Query: 191 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 251 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctnag 310
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                     
Query: 311 cncctacgagtacgtcagccagggcc 336
           | ||||||||||| ||||||||||||
Sbjct: 490 ctcctacgagtacatcagccagggcc 515

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                          
Query: 186    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 246    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 306    ctnagcncctacgagtacgtcagccaggg 334
              || ||| ||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 191    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 251    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 301
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  115 bits (58), Expect = 9e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                          
Query: 56     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 115
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                            
Query: 116    ggcaagagctccaa 129
              ||||||||||||||
Sbjct: 109778 ggcaagagctccaa 109765



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 9      agatggctgctgccttctcctccaccgtcggggctccgg 47
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                         
Query: 186   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 246   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 306   ctnagcncctacgagtacgtcagccaggg 334
             || ||| ||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 191   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 251   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 301
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  115 bits (58), Expect = 9e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                         
Query: 56    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 115
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                           
Query: 116   ggcaagagctccaa 129
             ||||||||||||||
Sbjct: 31655 ggcaagagctccaa 31642



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 9     agatggctgctgccttctcctccaccgtcggggctccgg 47
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                            
Query: 186      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 246      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 306      ctnagcncctacgagtacgtcagccaggg 334
                || ||| ||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 191      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 251      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 301
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  115 bits (58), Expect = 9e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 56       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 115
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                              
Query: 116      ggcaagagctccaa 129
                ||||||||||||||
Sbjct: 28304917 ggcaagagctccaa 28304904



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 9        agatggctgctgccttctcctccaccgtcggggctccgg 47
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccaggg 172

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                            
Query: 186      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 246      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 306      ctnagcncctacgagtacgtcagccaggg 334
                || ||| ||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 191      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 251      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 301
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  115 bits (58), Expect = 9e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 56       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 115
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                              
Query: 116      ggcaagagctccaa 129
                ||||||||||||||
Sbjct: 28287366 ggcaagagctccaa 28287353



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 9        agatggctgctgccttctcctccaccgtcggggctccgg 47
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                        
Query: 306 ctnagcncctacgagtacgtcagccaggg 334
           || ||| ||||||||||| ||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccaggg 393



 Score =  161 bits (81), Expect = 2e-36
 Identities = 111/121 (91%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 128
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

            
Query: 129 a 129
           |
Sbjct: 186 a 186

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  121 bits (61), Expect = 2e-24
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                          
Query: 306 ctnagcncctacgagtacgtcagccagggcc 336
           || ||| ||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 11  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 64
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 65  ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 121
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 122 agctcca 128
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  107 bits (54), Expect = 2e-20
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 222 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 281
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                           
Query: 282 ggcgacggcacccacgaggccgtcctnagcncctacgagtacgtcagc 329
           |||||||| |||||| |  ||||||| ||| ||||||||||| |||||
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  107 bits (54), Expect = 2e-20
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 222 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 281
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                           
Query: 282 ggcgacggcacccacgaggccgtcctnagcncctacgagtacgtcagc 329
           |||||||| |||||| |  ||||||| ||| ||||||||||| |||||
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  107 bits (54), Expect = 2e-20
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 222 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 281
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                           
Query: 282 ggcgacggcacccacgaggccgtcctnagcncctacgagtacgtcagc 329
           |||||||| |||||| |  ||||||| ||| ||||||||||| |||||
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 124/151 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 245
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 246 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 305
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                          
Query: 306 ctnagcncctacgagtacgtcagccagggcc 336
           || ||| ||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 11  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 64
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 65  ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 121
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 122 agctcca 128
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 192 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 247
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 215 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 274
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 192 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 250
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 217     ccgacgaccagcaggacatcacc 239
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 259     actcgctcttccaggcgcccac 280
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 73     gaagaagctcaagaagcaggtg 94
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 213  atctccgacgaccagcaggacatc 236
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  cccacgggcgacggcacccacgag 299
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ctgccttctcctccaccgtc 37
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 276 cccacgggcgacggcacccacgag 299
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   ctgctgccttctcctccacc 34
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 15 ctgctgccttctcctccacc 34
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 15 ctgctgccttctcctccacc 34
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   gaagaagctcaagaagcagg 92
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    cccacgggcgacggcacccacgag 299
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tggctgctgccttctcctcc 31
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ccagagggaagggcatcgtg 257
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      acagagatggctgctgcctt 24
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ccagagggaagggcatcgtg 257
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 276 cccacgggcgacggcacccacgag 299
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     cgatatctccgacgaccagc 228
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aagaagctcaagaagcaggt 93
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tggctgctgccttctcctcc 31
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 8      gagatggctgctgccttctcctcc 31
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 276 cccacgggcgacggcacccacgag 299
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,335,577
Number of Sequences: 3902068
Number of extensions: 2335577
Number of successful extensions: 43174
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42930
Number of HSP's gapped (non-prelim): 236
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---