ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal9l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TORC_ECOLI (P33226) Cytochrome c-type protein torC 28 6.2
2TORC_ECO57 (P58359) Cytochrome c-type protein torC 28 6.2
3CYC_HELAS (P00032) Cytochrome c 28 8.1

>TORC_ECOLI (P33226) Cytochrome c-type protein torC|
          Length = 390

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 259 LSLVHLH*SRDVRLXWLPHAGWKKTAWTSGCFQCHACSAI 140
           L+LV +     + L  LPH G K T+ T  C  CH+   +
Sbjct: 18  LALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPV 57



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>TORC_ECO57 (P58359) Cytochrome c-type protein torC|
          Length = 390

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 259 LSLVHLH*SRDVRLXWLPHAGWKKTAWTSGCFQCHACSAI 140
           L+LV +     + L  LPH G K T+ T  C  CH+   +
Sbjct: 18  LALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPV 57



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>CYC_HELAS (P00032) Cytochrome c|
          Length = 104

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -2

Query: 190 KTAWTSGCFQCHACSAIGQGRTRTTGLGIF--HGGQRRRAVIN*RQSGKEIFWR 35
           K  +T  C QCH   A G+ +T     G+F    GQ           GK I W+
Sbjct: 7   KKIFTQKCLQCHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWK 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,352,417
Number of Sequences: 219361
Number of extensions: 710397
Number of successful extensions: 1758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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