ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9l03 |
|---|---|
| Clone Library Name | barley_pub |
>TLP40_SPIOL (O49939) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor| (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) Length = 449 Score = 245 bits (626), Expect = 8e-65 Identities = 124/181 (68%), Positives = 150/181 (82%), Gaps = 1/181 (0%) Frame = +3 Query: 132 LSGEKGNSFSWNKCAISIALSVGLITCPPTFGWSAHAFPL-EPVIPDISVLISGPPIKDP 308 L +K SFS +CAIS+AL+ LI+ P+ W HA L PV+PD++VLISGPPIKDP Sbjct: 56 LDKQKKRSFSVKECAISLALAAALISGVPSLSWERHAEALTSPVLPDLAVLISGPPIKDP 115 Query: 309 GALLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRSLILT 488 ALLRYALPIDNKAIREVQKPLEDIT+SL+V G++ALDSVERN++QASRAL NG+SLI+ Sbjct: 116 EALLRYALPIDNKAIREVQKPLEDITESLRVLGLKALDSVERNLKQASRALKNGKSLIIA 175 Query: 489 GLAESKRENGEKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVGIVEEDMVDGFPY 668 GLAESK++ G ++LDKL G+ ELQ+I+E+RNR VAPKQ+ELL YVG VEEDMVDGFPY Sbjct: 176 GLAESKKDRGVELLDKLEAGMGELQQIVENRNREGVAPKQRELLQYVGSVEEDMVDGFPY 235 Query: 669 E 671 E Sbjct: 236 E 236
>M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)| Length = 564 Score = 36.2 bits (82), Expect = 0.092 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Frame = +3 Query: 330 LPIDNKAIR----EVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRSLILTGLA 497 L IDN ++ E++K +E+ D L +++ + +A + + GR + L Sbjct: 117 LGIDNADLKAKITELEKSVEEKND--------VLSQIKKELEEAEKDIQFGREVHAADLL 168 Query: 498 ESKRENGEK--ILDKLAVGLEELQRIIEDRNRNAVAPKQKEL 617 K+E EK ++ KL L+ L++ +++ +RN KQK L Sbjct: 169 RHKQEIAEKENVISKLNGELQPLKQKVDETDRNLQQEKQKVL 210
>CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 (EC 3.6.1.-)| (ATP-dependent helicase CHD7) (CHD-7) (Fragment) Length = 2235 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +3 Query: 507 RENGEKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVGIVEEDMVD 656 + NG+K+ +A +++L R +E+ AVAP +++ G V E M D Sbjct: 1890 KRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFD 1939
>Y1476_AQUAE (O67453) Hypothetical protein aq_1476| Length = 180 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +3 Query: 453 RALTNGRSLILTGLAESKRENGEKI---LDKLAVGLEELQRIIEDRNRNAVAPKQKELL 620 ++LT ++TG E RE EK+ LD + +EEL+R +E R R +A K+ EL+ Sbjct: 4 KSLTMENVKVVTGEIEKLRERIEKVKETLDLIPKEIEELERELE-RVRQEIAKKEDELI 61
>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein| SMC3) Length = 1230 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Frame = +3 Query: 351 IREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRSLILTGLAESKRENGEKIL 530 I +V K L I SLK+ L + + S+ LTN I + + ++ L Sbjct: 274 IDQVSKKLSSIEASLKIKNATDLQQAKLRESEISQKLTNVNVKIKDVQQQIESNEEQRNL 333 Query: 531 DKLAVGLEELQRIIEDRNR--NAVAPKQKEL 617 D + L+E++ IIE R + + + P+ +EL Sbjct: 334 D--SATLKEIKSIIEQRKQKLSKILPRYQEL 362
>PER50_ARATH (Q43731) Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50)| (PRXR2) (ATP9a) Length = 329 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -3 Query: 304 SLMGGPEIRTEISGITGSSGKAWADHPNVGGQVINPTDNAIEIAHLFQLN 155 +L GGP+ E+ + G S A +VGG++ +PTD+ ++ LF N Sbjct: 138 NLAGGPQYDVELGRLDGLSSTA----ASVGGKLPHPTDDVNKLTSLFAKN 183
>DBP4_EMENI (Q5BFU1) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)| Length = 812 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/102 (20%), Positives = 45/102 (44%) Frame = +3 Query: 339 DNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRSLILTGLAESKRENG 518 D + + L+D SL + G + ++ + + + + + + +G ES E G Sbjct: 464 DKETFNLKELKLDDFAASLGLPGAPRIKFIKGDDTKERKNASRATAYLTSGDEESDEEGG 523 Query: 519 EKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVGIVEE 644 +K K + R+ E RN++ +A +L+N G + + Sbjct: 524 KKKQPKEKEVRTKYDRMFERRNQDVLAEHYSKLINDDGTIAD 565
>PPNK1_BACHK (Q6HLY2) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Frame = -3 Query: 343 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 197 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 196 TDNAIEIAHLFQLNEFPF 143 + AI+IA + +N F Sbjct: 175 SIEAIQIAEMASINNRVF 192
>PPNK1_BACCZ (Q63EG5) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Frame = -3 Query: 343 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 197 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 196 TDNAIEIAHLFQLNEFPF 143 + AI+IA + +N F Sbjct: 175 SIEAIQIAEMASINNRVF 192
>PPNK1_BACCR (Q81GJ9) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Frame = -3 Query: 343 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 197 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 196 TDNAIEIAHLFQLNEFPF 143 + AI+IA + +N F Sbjct: 175 SIEAIQIAEMASINNRVF 192
>PPNK1_BACC1 (Q73BU7) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Frame = -3 Query: 343 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 197 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 196 TDNAIEIAHLFQLNEFPF 143 + AI+IA + +N F Sbjct: 175 SIEAIQIAEMASINNRVF 192
>PPNK1_BACAN (Q81TQ3) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Frame = -3 Query: 343 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 197 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 196 TDNAIEIAHLFQLNEFPF 143 + AI+IA + +N F Sbjct: 175 SIEAIQIAEMASINNRVF 192
>VG22_ICHV1 (Q00105) Hypothetical gene 22 protein| Length = 1403 Score = 30.4 bits (67), Expect = 5.1 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 315 LLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRS-LILTG 491 +L L + +RE+Q+ L + + + R + S E +R+ R LT+ R L+ TG Sbjct: 978 VLNAGLTLARTELREIQRELVHEKNKSRDAEQRHVAS-EAALREQIRTLTDERDRLLATG 1036 Query: 492 LAESKRENGE 521 +A+ +REN E Sbjct: 1037 VADLQRENAE 1046
>AMID_RHORH (P84650) Enantioselective amidase (EC 3.5.1.4)| Length = 517 Score = 30.4 bits (67), Expect = 5.1 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 120 VRCALSGEKGNSFSWNKCAISIALSV-GLITCPPTFGWSAHAFPLEPVI 263 V CA+ G+ G S I I L+ G++ C PT G + FP+E I Sbjct: 186 VDCAVGGDGGGS-------IRIPLACCGIVGCKPTHGLKPYTFPIERTI 227
>SAPS2_HUMAN (O75170) SAPS domain family member 2| Length = 927 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%) Frame = +3 Query: 459 LTNGRSLILTGLAESKRENGEKILDKLAVGLEELQRI-------IEDRNRN-----AVAP 602 L +G ++LT L E++R E ++D + GLE + IE R ++ P Sbjct: 265 LVSGTQVLLT-LLETRRVGTEGLVDSFSQGLERSYAVSSSVLHGIEPRLKDFHQLLLNPP 323 Query: 603 KQKELLNYVGIVEEDM 650 K+K +L +G++EE + Sbjct: 324 KKKAILTTIGVLEEPL 339
>FLHA_HELPJ (Q9ZM40) Flagellar biosynthesis protein flhA| Length = 733 Score = 30.0 bits (66), Expect = 6.6 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 13/126 (10%) Frame = +3 Query: 312 ALLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTN------GR 473 ALL +PI +++ LE ITD + E+ + SR +TN GR Sbjct: 576 ALLHEKIPI-----KDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGR 630 Query: 474 SLILTGLAESK-------RENGEKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVG 632 LT +S+ RENG L + + ELQ++IE + A+ QK + + Sbjct: 631 LKFLTFSTDSEQFLLNKLRENGTS--KSLLLNVGELQKLIEGVSEEAMKVLQKGIAPVIL 688 Query: 633 IVEEDM 650 IVE ++ Sbjct: 689 IVEPNL 694
>ARLZ_SCHPO (P50514) Probable argininosuccinate lyase (EC 4.3.2.1)| (Arginosuccinase) (ASAL) Length = 460 Score = 29.6 bits (65), Expect = 8.7 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Frame = +3 Query: 342 NKAIREVQKPLED----ITDSLKV-SGVRALDSVERNVRQASRALTNGRSLILTGLAESK 506 NK ++E ++PL D + DS+++ +GV L ++ N +++LT ++ T LAE Sbjct: 322 NKDLQEDKEPLFDSSKTVLDSIQILTGV--LSTLTVNPENIAKSLT--ADMLATDLAEYL 377 Query: 507 RENGEKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVGIVEEDMVDGFPYE 671 G + + + R+ E+RN ++ + + EED+ D F YE Sbjct: 378 VRKGVPFRETHHISGSAV-RMAEERNTTIDKLSVEDFKSLHPLYEEDVADVFNYE 431
>CF060_HUMAN (Q8NB25) Protein C6orf60| Length = 1020 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = +3 Query: 351 IREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTN----GRSLILTGLAESKRENG 518 + E+++ + SLK + V A ++E + RAL N S L L ++ RE+ Sbjct: 613 LEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESM 672 Query: 519 EKILDKLAVGLEELQRIIEDRNRNAVAPKQKEL 617 E ++ L+ L+ +ED + +A + EL Sbjct: 673 EGFRIEMEQELQTLRFELEDEGKAMLASLRSEL 705 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,189,773 Number of Sequences: 219361 Number of extensions: 1501338 Number of successful extensions: 4686 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4685 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
