>ATPD_SPIOL (P11402) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 257

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 17/48 (35%), Positives = 34/48 (70%)
 Frame = +3

Query: 18  NLAIE*VVEPSLIAGFVVCYGLDDSHTIDLSVRGRLAALKSRVDNSDL 161
           N+ I+ V++PSL+AGF + YG + S  +D+SV+ +L  + ++++  D+
Sbjct: 206 NVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQLEMDDV 253

>ATPD_PEA (Q02758) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 251

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/42 (40%), Positives = 29/42 (69%)
 Frame = +3

Query: 36  VVEPSLIAGFVVCYGLDDSHTIDLSVRGRLAALKSRVDNSDL 161
           +++PSL+AGF V YG   S  ID+SV+ +L  + +++D  D+
Sbjct: 206 LLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIAAQIDLGDI 247

>ATPD_SORBI (Q07300) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 247

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +3

Query: 18  NLAIE*VVEPSLIAGFVVCYGLDDSHTIDLSVRGRLAALKSRVDNSDL 161
           N+ ++  ++P LIAGF V YG D S  ID+SVR ++  + S  +  D+
Sbjct: 196 NVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRKQIEEITSEFELPDV 243

>ATPD_TOBAC (P32980) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 248

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 17/48 (35%), Positives = 32/48 (66%)
 Frame = +3

Query: 18  NLAIE*VVEPSLIAGFVVCYGLDDSHTIDLSVRGRLAALKSRVDNSDL 161
           N+ I+ V++ SL+AGF + YG   S  ID+SV+ +L  + ++++  D+
Sbjct: 197 NVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLEIGDI 244

>ATPD_CHLRE (Q42687) ATP synthase delta chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 219

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = +3

Query: 18  NLAIE*VVEPSLIAGFVVCYGLDDSHTIDLSVRGRL 125
           N+ ++ V++ SLIAGFVV YG   S  IDLSVRG++
Sbjct: 171 NIKLKPVIDSSLIAGFVVEYG---SSQIDLSVRGQI 203

>ATPD_GALSU (P35010) ATP synthase delta chain, chloroplast (EC 3.6.3.14)|
          Length = 177

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +3

Query: 39  VEPSLIAGFVVCYGLDDSHTIDLSVRGRL 125
           ++PSLI G ++ +G   S+ IDLS++G+L
Sbjct: 146 IDPSLIGGLIIKFG---SNLIDLSLKGKL 171

>GLUQ_NOCFA (Q5Z380) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 311

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 72  CYGLDDSHTIDLSVRGRLAALKSRVDNSDLD--DRLHPRTPAPL 197
           C  L D+   +   +GR AAL+ R + +D +  D+LH R   P+
Sbjct: 129 CRDLSDADRAERRAQGRPAALRLRAERTDFEIVDQLHGRYRGPV 172

>ATPD_OCHNE (Q40610) ATP synthase delta chain, chloroplast (EC 3.6.3.14)|
          Length = 179

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 39  VEPSLIAGFVVCYGLDDSHTIDLSVRGRLAALKS 140
           VEP LI GF V  G   S  ID S+RG+L  + +
Sbjct: 145 VEPKLIGGFTVEIG---SKLIDTSIRGQLKKISN 175

>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
            factor-like domains 1)
          Length = 4351

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 78   GLDDSHTIDLSVRGRLAALKSRVDNSDLDDRLHPRTPAP 194
            GL       L +  + A L  R  N +L+D + PR P+P
Sbjct: 4223 GLYGGFPFPLELENKRAPLPPRYSNQNLEDLMPPRPPSP 4261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,720,236
Number of Sequences: 219361
Number of extensions: 184866
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)