ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal9k10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477314.1| Oryza sativa (japonica cultivar-group), mRNA 210 3e-51
2dbj|AK066852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 3e-51
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
4dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
5dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
6gb|AY106725.1| Zea mays PCO074056 mRNA sequence 82 2e-12
7gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, com... 42 1.8
8emb|CR956629.5| Pig DNA sequence from clone PigE-42A23 on chromo... 42 1.8
9emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in... 42 1.8
10gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.9
11ref|XM_566889.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 6.9
12gb|BT022152.1| Drosophila melanogaster IP01423 full insert cDNA 40 6.9
13gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete s... 40 6.9
14emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on ch... 40 6.9
15gb|AF461416.1| Drosophila melanogaster gcm-motif transcription f... 40 6.9
16gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, compl... 40 6.9
17ref|NM_205947.1| Drosophila melanogaster gcm2 CG3858-RB, transcr... 40 6.9
18ref|NM_135458.3| Drosophila melanogaster gcm2 CG3858-RA, transcr... 40 6.9
19gb|AF184664.1|AF184664 Drosophila melanogaster Glide2 mRNA, comp... 40 6.9
20dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 40 6.9
21emb|AJ001863.1|HS001863 Homo Sapiens mRNA partial cDNA sequence ... 40 6.9
22gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, r... 40 6.9
23gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 6.9
24dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.9
25emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chr... 40 6.9
26emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chro... 40 6.9
27dbj|AB056467.1| Drosophila melanogaster gcm2 mRNA for transcript... 40 6.9
28dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 40 6.9 
>ref|XM_477314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1250

 Score =  210 bits (106), Expect = 3e-51
 Identities = 209/245 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgagtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttact 60
           |||||||||||||||||| |||  | | |||| |||| |||||||| |||||||||||||
Sbjct: 557 atgatgagtctcaagaagttgctaaagcttttcgagccgtctgcacgccagagttttact 616

                                                                       
Query: 61  tgttcaaaaaagatgggcgaaggccatttgaacttttttaccacgggcagtttgatgatt 120
           |||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 617 tgttcaaaaaggatggacgaaggccatttgagcttttctaccatgggcagtttgacgatt 676

                                                                       
Query: 121 caagaccgagtaacaatgtgccagntacaggaagagatttaagccgcgcaatcgnntgng 180
           |||||||||||||||| ||||||| ||| ||||| |||||||| || || || |  || |
Sbjct: 677 caagaccgagtaacaacgtgccagttaccggaagggatttaagtcgtgcgattgattgtg 736

                                                                       
Query: 181 cacttagtggccaagaattgccgttcgaccaaaaaccaagtgtcgggtgcagcatcaagt 240
           |||||||||| |||||  | || || |  | |||||| |||||||||||||||||||| |
Sbjct: 737 cacttagtggacaagagctaccttttgtgccaaaacccagtgtcgggtgcagcatcaaat 796

                
Query: 241 ggcac 245
           |||||
Sbjct: 797 ggcac 801
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>dbj|AK066852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077B21, full
           insert sequence
          Length = 1250

 Score =  210 bits (106), Expect = 3e-51
 Identities = 209/245 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgagtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttact 60
           |||||||||||||||||| |||  | | |||| |||| |||||||| |||||||||||||
Sbjct: 557 atgatgagtctcaagaagttgctaaagcttttcgagccgtctgcacgccagagttttact 616

                                                                       
Query: 61  tgttcaaaaaagatgggcgaaggccatttgaacttttttaccacgggcagtttgatgatt 120
           |||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 617 tgttcaaaaaggatggacgaaggccatttgagcttttctaccatgggcagtttgacgatt 676

                                                                       
Query: 121 caagaccgagtaacaatgtgccagntacaggaagagatttaagccgcgcaatcgnntgng 180
           |||||||||||||||| ||||||| ||| ||||| |||||||| || || || |  || |
Sbjct: 677 caagaccgagtaacaacgtgccagttaccggaagggatttaagtcgtgcgattgattgtg 736

                                                                       
Query: 181 cacttagtggccaagaattgccgttcgaccaaaaaccaagtgtcgggtgcagcatcaagt 240
           |||||||||| |||||  | || || |  | |||||| |||||||||||||||||||| |
Sbjct: 737 cacttagtggacaagagctaccttttgtgccaaaacccagtgtcgggtgcagcatcaaat 796

                
Query: 241 ggcac 245
           |||||
Sbjct: 797 ggcac 801
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  103 bits (52), Expect = 6e-19
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                           
Query: 72      gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 131
               ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 9134259 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 9134318

                                      
Query: 132     aacaatgtgccagntacaggaag 154
               ||||| ||||||| ||| |||||
Sbjct: 9134319 aacaacgtgccagttaccggaag 9134341



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                           
Query: 7       agtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttacttgttca 66
               |||||||||||| |||  | | |||| |||| |||||||| |||||||||||||||||||
Sbjct: 9133579 agtctcaagaagttgctaaagcttttcgagccgtctgcacgccagagttttacttgttca 9133638

                   
Query: 67      aaaa 70
               ||||
Sbjct: 9133639 aaaa 9133642



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 219     agtgtcgggtgcagcatcaagtggcac 245
               |||||||||||||||||||| ||||||
Sbjct: 9134574 agtgtcgggtgcagcatcaaatggcac 9134600
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>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0046D03
          Length = 150554

 Score =  103 bits (52), Expect = 6e-19
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                         
Query: 72    gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 131
             ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 17132 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 17191

                                    
Query: 132   aacaatgtgccagntacaggaag 154
             ||||| ||||||| ||| |||||
Sbjct: 17192 aacaacgtgccagttaccggaag 17214



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 7     agtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttacttgttca 66
             |||||||||||| |||  | | |||| |||| |||||||| |||||||||||||||||||
Sbjct: 16452 agtctcaagaagttgctaaagcttttcgagccgtctgcacgccagagttttacttgttca 16511

                 
Query: 67    aaaa 70
             ||||
Sbjct: 16512 aaaa 16515



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 219   agtgtcgggtgcagcatcaagtggcac 245
             |||||||||||||||||||| ||||||
Sbjct: 17447 agtgtcgggtgcagcatcaaatggcac 17473
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>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1370_E02
          Length = 128326

 Score =  103 bits (52), Expect = 6e-19
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                          
Query: 72     gatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagaccgagt 131
              ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 124666 gatggacgaaggccatttgagcttttctaccatgggcagtttgacgattcaagaccgagt 124725

                                     
Query: 132    aacaatgtgccagntacaggaag 154
              ||||| ||||||| ||| |||||
Sbjct: 124726 aacaacgtgccagttaccggaag 124748



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                          
Query: 7      agtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttacttgttca 66
              |||||||||||| |||  | | |||| |||| |||||||| |||||||||||||||||||
Sbjct: 123986 agtctcaagaagttgctaaagcttttcgagccgtctgcacgccagagttttacttgttca 124045

                  
Query: 67     aaaa 70
              ||||
Sbjct: 124046 aaaa 124049



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 219    agtgtcgggtgcagcatcaagtggcac 245
              |||||||||||||||||||| ||||||
Sbjct: 124981 agtgtcgggtgcagcatcaaatggcac 125007
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>gb|AY106725.1| Zea mays PCO074056 mRNA sequence
          Length = 547

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 112/135 (82%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gtctcaagaagntgcccaggattttagagcagtctgcacaccagagttttacttgttcaa 67
           ||||||||| |  ||| ||| |||| |||| |||||||| |||||||| |||||||||||
Sbjct: 1   gtctcaagaggtagccaaggcttttggagcggtctgcacgccagagttctacttgttcaa 60

                                                                       
Query: 68  aaaagatgggcgaaggccatttgaacttttttaccacgggcagtttgatgattcaagacc 127
           ||| ||||| || | ||   |||||||||| ||||| || ||||| ||||| ||||||||
Sbjct: 61  aaaggatggccgga-gcttnttgaacttttctaccatggacagttcgatgactcaagacc 119

                          
Query: 128 gagtaacaatgtgcc 142
            |||||||| |||||
Sbjct: 120 cagtaacaacgtgcc 134



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 160 taagccgcgcaatcgnntgngcacttagtggccaagaattgccgttcgaccaaaaaccaa 219
           |||||||||| || |  || || || |||||||||||| |||| || |  ||||| ||||
Sbjct: 153 taagccgcgcgattgactgtgcgctcagtggccaagaactgccctttgtgcaaaagccaa 212

                                     
Query: 220 gtgtcgggtgcagcatcaagtggcac 245
           ||||||| ||||||||||| ||||||
Sbjct: 213 gtgtcggctgcagcatcaaatggcac 238
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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    gatgattttgtttttctctct 298
              |||||||||||||||||||||
Sbjct: 122484 gatgattttgtttttctctct 122464
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>emb|CR956629.5| Pig DNA sequence from clone PigE-42A23 on chromosome 7, complete
             sequence
          Length = 156529

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 272   caagcagatgattttgttttt 292
             |||||||||||||||||||||
Sbjct: 60764 caagcagatgattttgttttt 60784
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>emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in linkage group 16,
              complete sequence
          Length = 137333

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    cagatgattttgtttttctct 296
              |||||||||||||||||||||
Sbjct: 109568 cagatgattttgtttttctct 109548
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     ttgaggacaagcagatgatt 284
               ||||||||||||||||||||
Sbjct: 1517133 ttgaggacaagcagatgatt 1517114
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>ref|XM_566889.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNA05670) partial mRNA
          Length = 4182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  ttgaggacaagcagatgatt 284
            ||||||||||||||||||||
Sbjct: 1575 ttgaggacaagcagatgatt 1556
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>gb|BT022152.1| Drosophila melanogaster IP01423 full insert cDNA
          Length = 2257

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1219 cacttagtggccaagaattg 1200
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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   attttgtttttctctctcga 301
             ||||||||||||||||||||
Sbjct: 91607 attttgtttttctctctcga 91588
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>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains
             part of a novel gene (FLJ22153) and a CpG island, complete
             sequence
          Length = 99441

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   cccaaattctacccgtagct 511
             ||||||||||||||||||||
Sbjct: 87367 cccaaattctacccgtagct 87386
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>gb|AF461416.1| Drosophila melanogaster gcm-motif transcription factor (gcm2) mRNA,
            complete cds
          Length = 2964

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1919 cacttagtggccaagaattg 1900
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>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence
          Length = 184133

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    gtggcacaagtgaagagttt 258
              ||||||||||||||||||||
Sbjct: 174519 gtggcacaagtgaagagttt 174538
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>ref|NM_205947.1| Drosophila melanogaster gcm2 CG3858-RB, transcript variant B (gcm2),
            mRNA
          Length = 2924

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1898 cacttagtggccaagaattg 1879
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>ref|NM_135458.3| Drosophila melanogaster gcm2 CG3858-RA, transcript variant A (gcm2),
            mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1389 cacttagtggccaagaattg 1370
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>gb|AF184664.1|AF184664 Drosophila melanogaster Glide2 mRNA, complete cds
          Length = 2332

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1330 cacttagtggccaagaattg 1311
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>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    gaggaggcggcacctatatt 337
              ||||||||||||||||||||
Sbjct: 207546 gaggaggcggcacctatatt 207527
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>emb|AJ001863.1|HS001863 Homo Sapiens mRNA partial cDNA sequence from cDNA selection,
           DCR1-8.0
          Length = 1488

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 gaggaggcggcacctatatt 337
           ||||||||||||||||||||
Sbjct: 368 gaggaggcggcacctatatt 349
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>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone
             BACR24A22, complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   cacttagtggccaagaattg 200
             ||||||||||||||||||||
Sbjct: 92433 cacttagtggccaagaattg 92452
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
              sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cacttagtggccaagaattg 200
              ||||||||||||||||||||
Sbjct: 174272 cacttagtggccaagaattg 174253
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>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  gaggaggcggcacctatatt 337
            ||||||||||||||||||||
Sbjct: 6366 gaggaggcggcacctatatt 6385
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>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete
              sequence
          Length = 200480

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    attactgacaaagtagcagt 477
              ||||||||||||||||||||
Sbjct: 118023 attactgacaaagtagcagt 118004
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>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete
            sequence
          Length = 169745

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  cttagtggccaagaattgcc 202
            ||||||||||||||||||||
Sbjct: 5308 cttagtggccaagaattgcc 5327
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>dbj|AB056467.1| Drosophila melanogaster gcm2 mRNA for transcription factor glial
            cells missing 2, complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cacttagtggccaagaattg 200
            ||||||||||||||||||||
Sbjct: 1389 cacttagtggccaagaattg 1370
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>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6,
             CBR1-HLCS region
          Length = 39159

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   gaggaggcggcacctatatt 337
             ||||||||||||||||||||
Sbjct: 31030 gaggaggcggcacctatatt 31049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,368,747
Number of Sequences: 3902068
Number of extensions: 4368747
Number of successful extensions: 75038
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74954
Number of HSP's gapped (non-prelim): 84
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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