>POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 899

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 242 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW*KSSNGLRPSFLNK*NSGVQTALKSL 66
           N WPL  + +  L+ L VT  L LG LE SN PW        P F+ K  SG    L+ L
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW------NTPVFVIKKKSGKWRLLQDL 81

>POL_MMTVC (P11283) Pol polyprotein [Contains: Reverse transcriptase (EC|
           2.7.7.49); Endonuclease] (Fragment)
          Length = 114

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 242 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW*KSSNGLRPSFLNK*NSGVQTALKSL 66
           N WPL  + +  L+ L VT  L LG LE SN PW        P F+ K  SG    L+ L
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW------NTPVFVIKKKSGKWRLLQDL 81

>AXP1_YARLI (Q92389) Acid extracellular protease precursor (EC 3.4.23.-)|
          Length = 397

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 50  SLKKLPRILEQSAHQSFTCSKKMGEGHLNFFTTGSLMIQDRVTMCQLQEE 199
           SLK +PR+  Q  +Q F+ S     G ++ F    +++    TM  L+ +
Sbjct: 226 SLKTIPRVATQGGYQHFSVSASGKFGDVDLFDNDLVILDSGTTMTYLKSD 275

>Y110_PASMU (Q9CPD7) Hypothetical protein PM0110|
          Length = 256

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  QNCLNTLFLICMMSLKKLPRILEQSAHQS 97
           QN  N  F +  +S KKL +ILE S HQS
Sbjct: 158 QNSFNREFTLYCISWKKLYQILESSIHQS 186

>CXE1_MOUSE (Q921C1) Gap junction epsilon-1 protein (Connexin-29) (Cx29)|
          Length = 258

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -3

Query: 362 SITCFNSREKNKIICLSSTEQTLHLCHLMLHPTLGFWSNGNSWPLSAQSIARLKSLPVT 186
           S TCF S    K I L+        C L +   L     G  W +    ++ LK LP +
Sbjct: 178 STTCFQSHPSEKTIFLNIMFGISGACFLFIFLELALLGLGRFWRIYKHKLSFLKKLPTS 236

>WIPI3_PONPY (Q5R7W0) WD-repeat domain phosphoinositide-interacting protein 3|
           (WIPI-3) (WD-repeat protein 45-like) (WDR45-like
           protein)
          Length = 344

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 368 ASSITCFNSREKNKIICLSSTEQTLHL 288
           A++I C NS +   +IC+SS   T+H+
Sbjct: 230 AANIYCINSNQDASLICVSSDHGTVHI 256

>PNCB_AGRT5 (Q8UIS9) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +1

Query: 91  PEFYLFKKDGRRPFELFYHGQFDDS 165
           PE+ LFK+DG+  +EL +HG++ D+
Sbjct: 115 PEYELFKRDGQ--YELNFHGRWMDT 137

>GMEB2_RAT (O88873) Glucocorticoid modulatory element-binding protein 2|
           (GMEB-2)
          Length = 529

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 233 AKNCRSTKNQVSGA---ASSGTSEEFVPL 310
           +  CRSTK  +SGA    SS TS E++PL
Sbjct: 171 SNTCRSTKIDLSGARVSLSSPTSTEYIPL 199

>GMEB2_MOUSE (P58929) Glucocorticoid modulatory element-binding protein 2|
           (GMEB-2)
          Length = 530

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 233 AKNCRSTKNQVSGA---ASSGTSEEFVPL 310
           +  CRSTK  +SGA    SS TS E++PL
Sbjct: 172 SNTCRSTKIDLSGARVSLSSPTSTEYIPL 200

>GMEB2_HUMAN (Q9UKD1) Glucocorticoid modulatory element-binding protein 2|
           (GMEB-2) (Parvovirus initiation factor p79) (PIF p79)
           (DNA-binding protein p79PIF)
          Length = 530

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 233 AKNCRSTKNQVSGA---ASSGTSEEFVPL 310
           +  CRSTK  +SGA    SS TS E++PL
Sbjct: 172 SNTCRSTKIDLSGARVSLSSPTSAEYIPL 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,197,536
Number of Sequences: 219361
Number of extensions: 1334693
Number of successful extensions: 3685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3685
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)