>gb|AY109501.1| Zea mays CL5942_1 mRNA sequence
          Length = 888

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 33  gagtacctcaaaggaattgggatatatgagtccattataaaggcactggccacacacaaa 92
           ||||||||||| ||||| |||||||| |||||||| || | |||||||||||| ||  ||
Sbjct: 291 gagtacctcaagggaatcgggatatacgagtccatcatcagggcactggccactcatgaa 350

                                                   
Query: 93  gatgacggcatcgacgaggagtctagggcagagctgtgag 132
           |||| |||||  || || || || ||||||||||||||||
Sbjct: 351 gatggcggcaaagatgacgaatccagggcagagctgtgag 390

>gb|BT023978.1| Zea mays clone EL01N0324F04 mRNA sequence
          Length = 1723

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                        
Query: 33   gagtacctcaaaggaattgggatatatgagtccattataaaggcactggccacacacaaa 92
            |||| |||||| ||||| |||||||| |||||||| || | |||||||||||| ||  ||
Sbjct: 1296 gagtccctcaagggaatcgggatatacgagtccatcatcagggcactggccactcatgaa 1355

                                                    
Query: 93   gatgacggcatcgacgaggagtctagggcagagctgtgag 132
            |||| |||||  || || || || ||||||||||||||||
Sbjct: 1356 gatggcggcaaagatgacgaatccagggcagagctgtgag 1395

>ref|XM_483309.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1371

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 31   atgagtacctcaaaggaattgggatatatgagtc 64
            |||||||||||||||| ||||||||||| |||||
Sbjct: 1271 atgagtacctcaaagggattgggatatacgagtc 1304

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 31       atgagtacctcaaaggaattgggatatatgagtc 64
                |||||||||||||||| ||||||||||| |||||
Sbjct: 25381562 atgagtacctcaaagggattgggatatacgagtc 25381529

>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 31    atgagtacctcaaaggaattgggatatatgagtc 64
             |||||||||||||||| ||||||||||| |||||
Sbjct: 12878 atgagtacctcaaagggattgggatatacgagtc 12845

>gb|AC162177.2| Mus musculus BAC clone RP24-159F5 from chromosome 9, complete sequence
          Length = 148915

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 40     tcaaaggaattgggatatatgagtc 64
              ||||||||||||||| |||||||||
Sbjct: 128026 tcaaaggaattgggagatatgagtc 128050

>gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, complete sequence
          Length = 168531

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 255    ataattggaccttgaaataataaat 279
              |||||| ||||||||||||||||||
Sbjct: 159905 ataattcgaccttgaaataataaat 159929

>gb|AC022733.8| Homo sapiens chromosome 8, clone RP11-470M17, complete sequence
          Length = 175202

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 255   ataattggaccttgaaataataaat 279
             |||||| ||||||||||||||||||
Sbjct: 98047 ataattcgaccttgaaataataaat 98023

>emb|CT025751.20| Mouse DNA sequence from clone RP24-365A12 on chromosome 9, complete
             sequence
          Length = 176584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 40    tcaaaggaattgggatatatgagtc 64
             ||||||||||||||| |||||||||
Sbjct: 99959 tcaaaggaattgggagatatgagtc 99983

>ref|XM_649788.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (41.t00040)
           partial mRNA
          Length = 360

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 catcttcttctgtacttgaataag 347
           |||||| |||||||||||||||||
Sbjct: 85  catctttttctgtacttgaataag 62

>ref|XM_649866.1| Entamoeba histolytica HM-1:IMSS RNA-binding protein (39.t00057)
           partial mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 catcttcttctgtacttgaataag 347
           |||||| |||||||||||||||||
Sbjct: 85  catctttttctgtacttgaataag 62

>ref|XM_649891.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (39.t00055)
           partial mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 catcttcttctgtacttgaataag 347
           |||||| |||||||||||||||||
Sbjct: 85  catctttttctgtacttgaataag 62

>ref|XM_759973.1| Theileria parva strain Muguga phosphate transporter (TP02_0500)
            partial mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   atgacggcatcgacgaggag 113
            ||||||||||||||||||||
Sbjct: 1568 atgacggcatcgacgaggag 1587

>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    gaaagatgatcttatcttgc 152
              ||||||||||||||||||||
Sbjct: 190116 gaaagatgatcttatcttgc 190135

>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence
          Length = 184396

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 296    ttcctcagcatattacaccgagtaatgg 323
              |||||| |||||||||||| ||||||||
Sbjct: 160416 ttcctctgcatattacacccagtaatgg 160443

>gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, complete sequence
          Length = 175783

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    tggcatcttcttctgtactt 340
              ||||||||||||||||||||
Sbjct: 153420 tggcatcttcttctgtactt 153439

>gb|AC155719.11| Mus musculus 6 BAC RP24-236K6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 179419

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ataaaggcactggccacaca 88
             ||||||||||||||||||||
Sbjct: 36755 ataaaggcactggccacaca 36774

>emb|BX649242.6| Zebrafish DNA sequence from clone DKEY-264C3 in linkage group 17,
            complete sequence
          Length = 147772

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 341  gaataagttataatggcatttcattggt 368
            |||| |||||| ||||||||||||||||
Sbjct: 4659 gaatgagttattatggcatttcattggt 4686

>gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232002

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     ataaaggcactggccacaca 88
              ||||||||||||||||||||
Sbjct: 227042 ataaaggcactggccacaca 227061

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 319      aatggcatcttcttctgtacttga 342
                |||||||||||||||||| |||||
Sbjct: 24302134 aatggcatcttcttctgtccttga 24302111

>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence
          Length = 196544

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    atggcatcttcttctgtact 339
              ||||||||||||||||||||
Sbjct: 195869 atggcatcttcttctgtact 195850

>gb|AC067961.8| Homo sapiens BAC clone RP11-59F3 from 2, complete sequence
          Length = 105884

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  atggcatcttcttctgtact 339
            ||||||||||||||||||||
Sbjct: 1325 atggcatcttcttctgtact 1306

>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
             sequences
          Length = 171187

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   atgtagttcctcagcatattacac 313
             ||||||||||||||||| ||||||
Sbjct: 50307 atgtagttcctcagcatcttacac 50284

>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ2055_H10
          Length = 119290

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    aatggcatcttcttctgtacttga 342
              |||||||||||||||||| |||||
Sbjct: 102522 aatggcatcttcttctgtccttga 102499

>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0407A09
          Length = 103788

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 319   aatggcatcttcttctgtacttga 342
             |||||||||||||||||| |||||
Sbjct: 31672 aatggcatcttcttctgtccttga 31649

>ref|XM_314399.2| Anopheles gambiae str. PEST ENSANGP00000000614
           (ENSANGG00000000551), partial mRNA
          Length = 2055

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  ggccacacacaaagatgacg 99
           ||||||||||||||||||||
Sbjct: 592 ggccacacacaaagatgacg 573

>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 290    atgtagttcctcagcatattacac 313
              ||||||||||||||||| ||||||
Sbjct: 125081 atgtagttcctcagcatcttacac 125058

>gb|AC118620.10| Mus musculus chromosome 3, clone RP24-571H24, complete sequence
          Length = 182926

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cagccaaagcaaaaccacag 232
             ||||||||||||||||||||
Sbjct: 31660 cagccaaagcaaaaccacag 31641

>gb|AC004606.1|AC004606 Homo sapiens chromosome 17, clone hRPC.1043_H_15, complete sequence
          Length = 99512

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tggcatcttcttctgtactt 340
             ||||||||||||||||||||
Sbjct: 80694 tggcatcttcttctgtactt 80675

>dbj|AP001251.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B5P9, LL56-APP
              region, complete sequence
          Length = 150681

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 290    atgtagttcctcagcatattacac 313
              ||||||||||||||||| ||||||
Sbjct: 113304 atgtagttcctcagcatcttacac 113281


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,647,627
Number of Sequences: 3902068
Number of extensions: 3647627
Number of successful extensions: 71350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71265
Number of HSP's gapped (non-prelim): 85
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)