ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal9i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102540.7| Mus musculus chromosome 3, clone RP23-98H24, comp... 38 4.7
2gb|AC157814.10| Mus musculus chromosome 3, clone RP24-134L24, co... 38 4.7
3gb|AC113192.3| Homo sapiens chromosome 11, clone RP11-646J21, co... 38 4.7
4gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, comple... 38 4.7
5gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold 38 4.7
6dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07,... 38 4.7
7dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 4.7
8dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 4.7

>gb|AC102540.7| Mus musculus chromosome 3, clone RP23-98H24, complete sequence
          Length = 207497

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    tgattctatcttgagtctt 88
             |||||||||||||||||||
Sbjct: 30417 tgattctatcttgagtctt 30399



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>gb|AC157814.10| Mus musculus chromosome 3, clone RP24-134L24, complete sequence
          Length = 150033

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    tgattctatcttgagtctt 88
             |||||||||||||||||||
Sbjct: 58306 tgattctatcttgagtctt 58324



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>gb|AC113192.3| Homo sapiens chromosome 11, clone RP11-646J21, complete sequence
          Length = 148308

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    agtatgattctatcttgag 84
             |||||||||||||||||||
Sbjct: 72412 agtatgattctatcttgag 72394



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>gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, complete sequence
          Length = 70806

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   caacaagcacttaagtatg 71
            |||||||||||||||||||
Sbjct: 8390 caacaagcacttaagtatg 8408



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>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold
          Length = 277620

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    caacaagcacttaagtatg 71
             |||||||||||||||||||
Sbjct: 65528 caacaagcacttaagtatg 65510



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>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete
             sequences
          Length = 186185

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    taatatgtcaacaagcact 63
             |||||||||||||||||||
Sbjct: 75850 taatatgtcaacaagcact 75832



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>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     taatatgtcaacaagcact 63
              |||||||||||||||||||
Sbjct: 293403 taatatgtcaacaagcact 293385



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>dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B745D19,
             LL56-APP region, complete sequence
          Length = 145869

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    taatatgtcaacaagcact 63
             |||||||||||||||||||
Sbjct: 54877 taatatgtcaacaagcact 54859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 560,965
Number of Sequences: 3902068
Number of extensions: 560965
Number of successful extensions: 34104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34092
Number of HSP's gapped (non-prelim): 12
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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