ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9i07 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 263 bits (673), Expect = 1e-70 Identities = 132/138 (95%), Positives = 133/138 (96%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 VASKCADAAKMAGFALATSALLVSGA+AEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI Sbjct: 52 VASKCADAAKMAGFALATSALLVSGATAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 111 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPP FQKTKLMTRLTYTLDEMEGP Sbjct: 112 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGP 171 Query: 384 LEVGADGTLKFEEKDGID 437 LEV TLKFEEKDGID Sbjct: 172 LEVRRRRTLKFEEKDGID 189
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 240 bits (613), Expect = 1e-63 Identities = 117/137 (85%), Positives = 123/137 (89%) Frame = +3 Query: 27 ASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTID 206 A KC DAAK+AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTID Sbjct: 59 AQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTID 118 Query: 207 GGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPL 386 GGVDSF FK GKY KKFCLEPTSFTVKAEG+ KN P FQKTKLMTRLTYTLDE+EGP Sbjct: 119 GGVDSFAFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPF 178 Query: 387 EVGADGTLKFEEKDGID 437 EV DGT+KFEEKDGID Sbjct: 179 EVSPDGTVKFEEKDGID 195
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 237 bits (605), Expect = 8e-63 Identities = 113/138 (81%), Positives = 124/138 (89%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 +A KC DAAK+AGFALATSAL++SGASAEG PKRLTFDEIQSKTYMEVKG+GTANQCPTI Sbjct: 55 IAQKCTDAAKLAGFALATSALVISGASAEGVPKRLTFDEIQSKTYMEVKGSGTANQCPTI 114 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 +GG +SF +K GKY +KK CLEPTSFTVKAEGI KN PP FQKTKLMTRLTYTLDE+EGP Sbjct: 115 EGGTESFGYKTGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGP 174 Query: 384 LEVGADGTLKFEEKDGID 437 EV DGT+KFEEKDGID Sbjct: 175 FEVAPDGTVKFEEKDGID 192
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 235 bits (599), Expect = 4e-62 Identities = 114/138 (82%), Positives = 125/138 (90%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 +A KC +A+K+AGFALATSAL+VSGASAEGAPKRLTFDEIQSKTY+EVKGTGTANQCPTI Sbjct: 54 LAHKCVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTI 113 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 DGGVDSF FK GKY KK CLEPTSFTVK+EG+ KN P AFQ TKLMTRLTYTLDE+EGP Sbjct: 114 DGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGP 173 Query: 384 LEVGADGTLKFEEKDGID 437 EV ADG++KFEEKDGID Sbjct: 174 FEVSADGSVKFEEKDGID 191
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 235 bits (599), Expect = 4e-62 Identities = 114/138 (82%), Positives = 123/138 (89%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 +A KC DAAK+AGFALATSAL+VSGA+AEG PKRLT+DEIQSKTYMEVKGTGTANQCPTI Sbjct: 55 LAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTI 114 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 +GGV SF FK GKY KKFCLEPTSFTVKAEG+ KN P FQKTKLMTRLTYTLDE+EGP Sbjct: 115 EGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGP 174 Query: 384 LEVGADGTLKFEEKDGID 437 EV DGT+KFEEKDGID Sbjct: 175 FEVSPDGTVKFEEKDGID 192
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 234 bits (598), Expect = 5e-62 Identities = 115/138 (83%), Positives = 123/138 (89%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 +A K DAAK+AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTI Sbjct: 58 LAQKFTDAAKVAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTI 117 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 DGGV SF FK GKY KKFCLEPTSFTVKAE + KN PP FQKTKLMTRLTYTLDE+EGP Sbjct: 118 DGGVASFAFKPGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGP 177 Query: 384 LEVGADGTLKFEEKDGID 437 EV +DGT+KFEEKDGID Sbjct: 178 FEVSSDGTVKFEEKDGID 195
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 231 bits (588), Expect = 8e-61 Identities = 110/137 (80%), Positives = 124/137 (90%) Frame = +3 Query: 27 ASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTID 206 A KC+DAAK+AGFALATSAL+VSGA AEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTID Sbjct: 58 AGKCSDAAKIAGFALATSALVVSGAGAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTID 117 Query: 207 GGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPL 386 GG ++F FKAGKY KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP Sbjct: 118 GGSETFSFKAGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPF 177 Query: 387 EVGADGTLKFEEKDGID 437 EVG+DG++KF+E+DGID Sbjct: 178 EVGSDGSVKFKEEDGID 194
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 223 bits (569), Expect = 1e-58 Identities = 106/135 (78%), Positives = 120/135 (88%) Frame = +3 Query: 33 KCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGG 212 KC+DA K+AGFALATSAL+VSGASAEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGG Sbjct: 61 KCSDAVKIAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGG 120 Query: 213 VDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEV 392 ++F FK GKY KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP EV Sbjct: 121 SETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEV 180 Query: 393 GADGTLKFEEKDGID 437 +DG++ F+E+DGID Sbjct: 181 ASDGSVNFKEEDGID 195
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 220 bits (560), Expect = 1e-57 Identities = 107/138 (77%), Positives = 119/138 (86%) Frame = +3 Query: 24 VASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTI 203 +A+KC DA K+AG ALATSAL+ SGA+AEG KRLT+DEIQSKTY+EVKGTGTANQCPT+ Sbjct: 57 LANKCVDATKLAGLALATSALIASGANAEGG-KRLTYDEIQSKTYLEVKGTGTANQCPTV 115 Query: 204 DGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGP 383 +GGVDSF FK GKY KKFCLEPT F VKAEGI KN P FQ TKLMTRLTYTLDE+EGP Sbjct: 116 EGGVDSFAFKPGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGP 175 Query: 384 LEVGADGTLKFEEKDGID 437 EV +DGT+KFEEKDGID Sbjct: 176 FEVSSDGTVKFEEKDGID 193
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 133 bits (335), Expect = 2e-31 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 1/131 (0%) Frame = +3 Query: 48 AKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTID-GGVDSF 224 A+ F A +A++ + A G+ LT+DE+Q TY++VKGTG AN CP ++ G D Sbjct: 27 AQKVEFGQAAAAVVAASALVAGSANALTYDELQGLTYLQVKGTGIANTCPVLEKGSTDLS 86 Query: 225 PFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADG 404 AG Y+++ FC+EPTSFTVK E + K F KTKLMTRLTYTLD M G L+VG+DG Sbjct: 87 ELSAGTYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDG 146 Query: 405 TLKFEEKDGID 437 + + +E+DGID Sbjct: 147 SAELKEEDGID 157
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 127 bits (320), Expect = 9e-30 Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 1/131 (0%) Frame = +3 Query: 48 AKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFP 227 A+ G A A +AL A G+ LTFDEIQ TY++VKG+G AN CP ++ G + Sbjct: 28 AQKVGQAAAAAALAT--AMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLK 85 Query: 228 -FKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADG 404 KAG Y+++ FC+EPTSFTVK E K F KTKLMTRLTYTLD M G +VG+DG Sbjct: 86 ELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDG 145 Query: 405 TLKFEEKDGID 437 + + +E DGID Sbjct: 146 SAELKEDDGID 156
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 120 bits (300), Expect = 2e-27 Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 2/132 (1%) Frame = +3 Query: 48 AKMAGFALATSALLVSGASAEGA-PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDS- 221 A +AG A A L+ A A A LT+DE+QS +Y+EVK +G A CP + GV S Sbjct: 69 AVLAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSK 128 Query: 222 FPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGAD 401 KAGKYE+ +CLEP+SF VK +K + F++TKLMTRLTYTLD + L VG D Sbjct: 129 LSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGD 188 Query: 402 GTLKFEEKDGID 437 G+ +EKDG+D Sbjct: 189 GSWTIQEKDGLD 200
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 89.4 bits (220), Expect = 4e-18 Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Frame = +3 Query: 69 LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 242 +AT + G + AP F Q+ TY ++ GTG AN+CPT+D ++P + + Sbjct: 7 MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63 Query: 243 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 422 Y + + CL+PT+F VK E K + F TKL+TR T +LD+++G L+V +DG+L F E Sbjct: 64 YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123 Query: 423 KDGID 437 +DGID Sbjct: 124 EDGID 128
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 89.4 bits (220), Expect = 4e-18 Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Frame = +3 Query: 69 LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 242 +AT + G + AP F Q+ TY ++ GTG AN+CPT+D ++P + + Sbjct: 7 MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63 Query: 243 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 422 Y + + CL+PT+F VK E K + F TKL+TR T +LD+++G L+V +DG+L F E Sbjct: 64 YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123 Query: 423 KDGID 437 +DGID Sbjct: 124 EDGID 128
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 82.4 bits (202), Expect = 4e-16 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Frame = +3 Query: 153 TYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEPPAF 326 TY +++GTG AN+CP + + S P + K Y +K+ CLEPT+F VK E K + F Sbjct: 34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSKSYVLKELCLEPTNFFVKEEPANKRQTAEF 93 Query: 327 QKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGID 437 KL+TR T T+D++ G L+ D +L F EKDG+D Sbjct: 94 VAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLD 130
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 80.1 bits (196), Expect = 2e-15 Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 4/99 (4%) Frame = +3 Query: 153 TYMEVKGTGTANQCPTID----GGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPP 320 TY ++ TG AN CP I G ++ P KY + FC+EP + VK E + K + Sbjct: 35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNT--KYFVSDFCMEPQEYFVKEEPVNKRQKA 92 Query: 321 AFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGID 437 + K K++TR T +L+++ G + VGADGTL F+EKDGID Sbjct: 93 EYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGID 131
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 75.9 bits (185), Expect = 4e-14 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 2/105 (1%) Frame = +3 Query: 129 TFDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGI 302 T ++ + TY ++K TG AN+C ++ + + P +AGK Y + CLEP F VK E Sbjct: 26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPG 85 Query: 303 QKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGID 437 K + F K++TR T +LD++ G L + ADGT+ F EK GID Sbjct: 86 NKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGID 130
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 69.3 bits (168), Expect = 4e-12 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Frame = +3 Query: 144 QSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEP 317 Q TY E+ TG AN+CP I S P + G+ Y + CLEP + VK E + K + Sbjct: 32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQE 91 Query: 318 PAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGID 437 + KL+TR T +L+++ G + V DG + F E+ GID Sbjct: 92 AEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGID 131
>PSBO_BRARA (P83504) Oxygen-evolving enhancer protein 1, chloroplast (OEE1)| (Fragment) Length = 31 Score = 67.0 bits (162), Expect = 2e-11 Identities = 30/31 (96%), Positives = 31/31 (100%) Frame = +3 Query: 108 EGAPKRLTFDEIQSKTYMEVKGTGTANQCPT 200 EGAPKRLT+DEIQSKTYMEVKGTGTANQCPT Sbjct: 1 EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31
>LRFN4_HUMAN (Q6PJG9) Leucine-rich repeat and fibronectin type-III| domain-containing protein 4 precursor Length = 635 Score = 30.8 bits (68), Expect = 1.5 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 16/68 (23%) Frame = -2 Query: 191 LVRGAGTLHLHVGLALDFVEGQPLG----------------RPLRTCARDEEGRGCEGEA 60 LVRG G + + L L V+ Q G RP R+C+ D GC G A Sbjct: 538 LVRGRGAGNGRLPLKLSHVQSQTNGGPSPTPKAHPPRSPPPRPQRSCSLDLGDAGCYGYA 597 Query: 59 GHLGGVGA 36 LGG A Sbjct: 598 RRLGGAWA 605
>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)| Length = 1285 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 167 HLHVGLALDFVEGQPLGRPLRTCARDEEGRGC 72 H+HVG L + QP G P R C +D GC Sbjct: 744 HVHVGGRLLAADSQPWGGPFRGCLQDLRLDGC 775
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 282 TVKAEGIQKNEPPAFQKTKLMTRLTYTLD 368 TVK + +Q+ PP F+KT+ M+ LT+ D Sbjct: 66 TVKKDVVQEMNPPKFEKTEDMSNLTFLND 94
>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle| Length = 1938 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 255 KFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTY 359 K + ++ TVK + IQ PP F+K + M +TY Sbjct: 59 KIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTY 93
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +3 Query: 6 NPTSGXVASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTA 185 +P G + + MA + S +L + P L+ D +++K Y G GT Sbjct: 1701 HPVRGKLYWTDGNTINMANMDGSNSKILFQN---QKEPVGLSIDYVENKLYWISSGNGTI 1757 Query: 186 NQCPTIDGG 212 N+C +DGG Sbjct: 1758 NRC-NLDGG 1765
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +3 Query: 6 NPTSGXVASKCADAAKMAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTA 185 +P G + + MA + S +L + P L+ D +++K Y G GT Sbjct: 1701 HPVRGKLYWTDGNTINMANMDGSNSKILFQN---QKEPVGLSIDYVENKLYWISSGNGTI 1757 Query: 186 NQCPTIDGG 212 N+C +DGG Sbjct: 1758 NRC-NLDGG 1765
>SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 protein (xSMC1)| Length = 1232 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 242 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 111 + G G G +D + V G T +L V D + G P+G+P Sbjct: 30 IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73
>SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 protein| (SMC-protein) Length = 1233 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 242 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 111 + G G G +D + V G T +L V D + G P+G+P Sbjct: 30 IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73
>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein| (SMC1alpha protein) (Chromosome segregation protein SmcB) (Sb1.8) Length = 1233 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 242 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 111 + G G G +D + V G T +L V D + G P+G+P Sbjct: 30 IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73
>SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1 protein| (SMC1alpha protein) (DXS423E protein) (Sb1.8) Length = 1233 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 242 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 111 + G G G +D + V G T +L V D + G P+G+P Sbjct: 30 IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73
>SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1 protein| (SMC-protein) Length = 1233 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 242 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 111 + G G G +D + V G T +L V D + G P+G+P Sbjct: 30 IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73
>NH103_CAEEL (O16359) Nuclear hormone receptor family member nhr-103| Length = 394 Score = 28.5 bits (62), Expect = 7.6 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = -1 Query: 159 CRSCSGFRRRSASWA 115 CRSC+ F RRSA+W+ Sbjct: 28 CRSCAAFFRRSATWS 42
>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)| Length = 1938 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 282 TVKAEGIQKNEPPAFQKTKLMTRLTYTLD 368 T+K + +Q+ PP F+KT+ M+ LT+ D Sbjct: 69 TLKKDIVQEVNPPKFEKTEDMSNLTFLND 97 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +3 Query: 186 NQCPTIDGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTL 365 NQ ++ ++S GK +K LE + + + +Q E Q +L +L TL Sbjct: 980 NQIHSLQDEMNSQDETIGKINKEKKLLEENNRQL-VDDLQAEEAKQAQANRLRGKLEQTL 1038 Query: 366 DEMEGPLE 389 DEME +E Sbjct: 1039 DEMEEAVE 1046
>MYO4_CAEEL (P02566) Myosin-4 (Myosin heavy chain B) (MHC B) (Uncoordinated| protein 54) Length = 1966 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 282 TVKAEGIQKNEPPAFQKTKLMTRLTYTLD 368 T+K E +Q+ PP F+KT+ M+ L++ D Sbjct: 69 TLKKELVQEMNPPKFEKTEDMSNLSFLND 97
>NIR_BETVE (P38500) Ferredoxin--nitrite reductase, chloroplast precursor (EC| 1.7.7.1) Length = 583 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 98 ARDEEGRGCEGEAGHLGG 45 ARDE G+ CEG A LGG Sbjct: 521 ARDENGKPCEGAAVFLGG 538
>LPXB_ECO57 (Q8X8X7) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 382 Score = 28.1 bits (61), Expect = 9.9 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Frame = -3 Query: 304 WMPSALTVKEVGSRQNFFISYLP---ALKGKESTPPSMVGHWFAVPVPFTSM*VLLWISS 134 W V ++G + +++LP A K + P +GH A +P +S Sbjct: 126 WAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPD-----KNS 180 Query: 133 KVSLLGAPS-----ALAPETRRAEVARAKPAILAASAHLLATXPDV 11 +LG P AL P +R AEV L + L T PD+ Sbjct: 181 ARDVLGIPYDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDL 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,457,613 Number of Sequences: 219361 Number of extensions: 936744 Number of successful extensions: 3648 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3639 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
