>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
 Frame = +1

Query: 31  PLVFFPISMHFTAPPEIPSAPTV----------LQLGSFHRLSRVEPW-DLTADLKSHLQ 177
           P+   P  +  TAPPE+P+AP V          +QLG   R SR  P+ ++T DL  HL 
Sbjct: 448 PMAQIPQGLTPTAPPEMPTAPPVDPAADLLRSYMQLGKKQRESRKTPYKEVTEDL-VHLN 506

Query: 178 TLY 186
           +L+
Sbjct: 507 SLF 509

>VNCS_MUMIV (P03134) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)|
          Length = 672

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 206 VIRNDWA*SVCRWLFKSAVKSQGSTLDRRW-KLPSWSTVGAE 84
           V +N+W   +C WL K+  +S  ++   +W K+P WS   AE
Sbjct: 526 VDKNEWP-MICAWLVKNGYQSTMASYCAKWGKVPDWSENWAE 566

>VNCS_MUMIM (P07300) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)|
          Length = 672

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 206 VIRNDWA*SVCRWLFKSAVKSQGSTLDRRW-KLPSWSTVGAE 84
           V +N+W   +C WL K+  +S  ++   +W K+P WS   AE
Sbjct: 526 VDKNEWP-MICAWLVKNGYQSTMASYCAKWGKVPDWSENWAE 566

>SYH_THEFY (Q47RX0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 438

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 159 LEKPPTDALRPIIPDNACILCLTAAAGTELADAYSSDTVIVSSPRK 296
           L K   DA+R I+ D A +    AAA  ELA+   SDT +V +  K
Sbjct: 200 LHKIGADAVREILIDQAGLSSDQAAACLELAEIRGSDTTVVDAVAK 245

>VNCS_PAVL3 (P36311) Noncapsid protein NS-1 (Nonstructural protein NS1)|
          Length = 668

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 206 VIRNDWA*SVCRWLFKSAVKSQGSTLDRRW-KLPSWSTVGAE 84
           V +N+W   +C WL K+  +S  ++   +W K+P W+   AE
Sbjct: 526 VDKNEWP-MICAWLVKNGYQSTMASYCAKWGKVPDWTENWAE 566

>VGLM_BUNYW (P04505) M polyprotein precursor [Contains: Glycoprotein G2;|
           Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1433

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 137 STLDRRWKLPSWSTVGAEGISGGAVKCIEIGKNTN 33
           S + R W +  W        +GG++  IE+ KN N
Sbjct: 68  SKVFRHWTITDWKACNPVVTAGGSINVIEVDKNLN 102

>FIP1_BRARE (Q5XJD3) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 570

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  GNSLCPYRTPAW*FPPPVQG*ALGFDGGLEKP 170
           G  + PY  P   FPPP+QG    + G +E P
Sbjct: 399 GRPVAPYPFPTGGFPPPMQGAVNPWPGLMENP 430

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
 Frame = +1

Query: 1   GQCRPSRVLSPLVFFPISMHFT-----APPEIPSAPTV-LQLGSFHRLSRVEPWDLTADL 162
           G C P  VL P  +FP+S  F       PP   S P +   L  F  LS     DL   L
Sbjct: 737 GPCLPFHVLHPADYFPLSAEFLTRTRHVPPSSLSHPKLNCLLTCFSELSGHSESDLWLSL 796

Query: 163 KSHLQTLYAQSFRIT---LASSVLPRL 234
           +S L     Q+  ++   L++ +L  L
Sbjct: 797 QSILPDSQLQNPEVSTLGLSTDILTAL 823

>YU61_VIBMA (Q9RA11) UPF0061 protein ORF18|
          Length = 557

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 148 NPRAQPWTGGGNY 110
           NP  QPWTGGGN+
Sbjct: 309 NPYYQPWTGGGNH 321

>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +1

Query: 64  TAPPEIPSAPTV---LQLGSFHRLSRVEPW-DLTADLKSHLQTLY 186
           TAPPE P+   +   +QLG   R SR +P+ ++T DL  HL +L+
Sbjct: 459 TAPPEDPAVDLLKNYMQLGKQQRESREKPYKEVTEDL-LHLNSLF 502

>PPNK2_SYNP6 (Q5MZV1) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 306

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 LRPIIPDNACILCLTAAAGTELADAYSSDTVIVSSP 290
           ++P  PD   +  L      E+ D Y  D +IVS+P
Sbjct: 153 VKPAAPDRMSVCILEMEVDGEIIDQYQGDGLIVSTP 188

>ICAL_BOVIN (P20811) Calpastatin (Calpain inhibitor)|
          Length = 705

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 117 PPPVQG*ALGFDGGLEKPPTDALRPIIPDNA 209
           PPP     L  + G+  PP D+L+P+ P++A
Sbjct: 181 PPPKYKELLNKEEGIAGPPPDSLKPLGPNDA 211

>ATZB_PSESD (P95442) Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)|
           (Hydroxyatrazine hydrolase)
          Length = 481

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 17  AECFRRWCSFRSQCISPLHRKFPLPLPYSSLVVST 121
           AEC R   ++  QC+    R+ P+P PY  L ++T
Sbjct: 342 AECIR--LAYLLQCLKASERQHPVPAPYDFLRMAT 374

>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = -2

Query: 313  YGSSTSFLGEETMTXXXXXXXXXXXXXXXVRQRMQALSGMIGRKASVGGFSSPPSNPRAQ 134
            +GSS+ F G  T                   Q++   S      A    FS+P  +P+A 
Sbjct: 1481 FGSSSIFGGGNTQGAVGAPAAGSTSIFG---QKVFGQSSAAAPAAGGNIFSNPVGSPQAS 1537

Query: 133  PWTGGGN 113
            P+ GGGN
Sbjct: 1538 PFGGGGN 1544

>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 105 LEYGRGRGNFRWSGEMH*DR 46
           LEY RG G F W GE   DR
Sbjct: 59  LEYWRGNGGFGWDGEEKYDR 78

>SYF1_ASPFU (Q4WVF4) Pre-mRNA-splicing factor syf1|
          Length = 839

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 79  IPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPR 231
           I    TV +   F     ++PW    + K    TLY Q+F +  A   LPR
Sbjct: 14  IADQDTVYEQDLFRAPGSIKPWLAYIEYKQQNGTLYEQAFVMERACKQLPR 64

>WA_EMENI (Q03149) Conidial yellow pigment biosynthesis polyketide synthase (EC|
            2.3.1.-) (PKS)
          Length = 2157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 145  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS*PMLIPQIPSLFLLREKKLTTRRPST 324
            DL  +     QTL      + L    +P  + QS P+ +PQ  S      K+L+TR  S+
Sbjct: 1821 DLPGEFFIENQTLDQIETALDLKPKAVPTAVPQSQPITLPQSQS-----TKQLSTRPTSS 1875

Query: 325  STRH 336
            S  H
Sbjct: 1876 SDNH 1879

>SMBT1_HUMAN (Q9UHJ3) Scm-like with four MBT domains protein 1 (Renal ubiquitous|
           protein 1)
          Length = 866

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 162 EKPPTDALRPIIPDNACILCLTAAAGTEL 248
           E    +A+ PI+P+  C+  +TA  G+ L
Sbjct: 386 ENMKLEAVNPILPEEVCVATITAVRGSYL 414

>VL1_BPV4 (P08341) Major capsid protein L1|
          Length = 506

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 43  FPISMHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQS 195
           F IS+H T  PE+    T       H L  VE WDL+  ++  +  L  +S
Sbjct: 342 FSISVH-TTDPEVKPQETYTATKFKHYLRHVEEWDLSLIMQLCIVNLTPES 391

>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 233  SRGKTEDASVIRNDWA*SVC-RWLFKSAVKSQGSTLD----RRWKLPSWSTVGAEG 81
            SR +   AS+I      +VC R+LF  AVK++         R   L SW TVGA G
Sbjct: 2943 SRARAVRASLISRGGKAAVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGG 2998

>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 233  SRGKTEDASVIRNDWA*SVC-RWLFKSAVKSQGSTLD----RRWKLPSWSTVGAEG 81
            SR +   AS+I      +VC R+LF  AVK++         R   L SW TVGA G
Sbjct: 2943 SRARAVRASLISRGGRAAVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGG 2998

>RS15_METMP (Q6LWX5) 30S ribosomal protein S15P/S13e|
          Length = 151

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 146 SQGSTLDRRWKLPSWSTVGAEGISGGAVKCIEIGKNT 36
           S GST   R ++P W ++ AE I    V+  + GK +
Sbjct: 11  SSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQS 47

>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 175 VGGFSSPPSNPR-AQPWTGGGNYQAGVR*GQREFPV 71
           +  F  PPS PR  +PW G    +AGV  GQ + PV
Sbjct: 143 LSSFQLPPSGPRVGRPW-GTTRSRAGVVEGQEQEPV 177

>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)] (Fragment)
          Length = 473

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 290 EKRS*RPVGLPPPRGIAPSGFRPLR 364
           E R  R +GLPPP G AP    P R
Sbjct: 304 EDRDRRGLGLPPPSGFAPGTVYPGR 328

>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor|
            (Fibrocystin) (Polyductin) (Tigmin)
          Length = 4074

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 110  PSWSTVGAEGISGGAVKCIEIGKNTNGESTLLGRH 6
            P+WST+   GI    VK I +  N    S  LG H
Sbjct: 3071 PAWSTIWVAGIKVNQVKDINLHGNVVAGSERLGFH 3105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,063,287
Number of Sequences: 219361
Number of extensions: 1234820
Number of successful extensions: 3764
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3762
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)