ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9g15 |
|---|---|
| Clone Library Name | barley_pub |
>IL7RA_MOUSE (P16872) Interleukin-7 receptor alpha chain precursor (IL-7R-alpha)| (CD127 antigen) Length = 459 Score = 33.1 bits (74), Expect = 0.19 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +3 Query: 75 GFWVPWRQNPRFRSQAFRNQGAFHSAIPAIVSSAWGAVWARVV---ALWKKSL 224 GFW W + F + +NQG + +P++ + +V+ V+ LWKK + Sbjct: 216 GFWSEWSPSSTFETPEPKNQGGWDPVLPSVTILSLFSVFLLVILAHVLWKKRI 268
>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1431 Score = 30.8 bits (68), Expect = 0.96 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 1 GPPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRPSGIRG 138 G PG R++ A S + P P G +G P+ P P+G G Sbjct: 803 GEPGAPGRVMTAEGSSTITVPGPPGPPGAMGPPGPSGTPGPAGPAG 848
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 30.8 bits (68), Expect = 0.96 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 61 PPRPAASGFLGAKIPASDPRPSGI-RGPFIQRFLLLSVRHGGLCGQG 198 PP PAA+ GA PAS P P+G GP + L VR G G G Sbjct: 46 PPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRLGDPDGAG 92
>PIGO_MOUSE (Q9JJI6) Phosphatidylinositol-glycan biosynthesis, class O protein| (PIG-O) Length = 1093 Score = 30.8 bits (68), Expect = 0.96 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 61 PPRPAASGFLGAKIPASDPRPSGIRGPFIQRFLLLSVRHGGL 186 PP+P LG+ P + PR SG ++ LLL R GL Sbjct: 597 PPKPLTMSRLGSSAPTAPPRHSGAHALWLGIGLLLFTRLAGL 638
>RNPA_THEAQ (Q7X5L4) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 162 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -3 Query: 197 PCPHSPPCRTDNSRNR*MKGPLIPEGLGSEAGILAPRNPEAAGR 66 P PH P R + + + KGPL P+ G G P+A GR Sbjct: 20 PGPHEDPRRQERAEAQAKKGPLAPDAQGKRLG---QGPPKAGGR 60
>ZN533_MOUSE (Q8BXJ8) Zinc finger protein 533| Length = 482 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = +1 Query: 4 PPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRP 123 P S+ L A S S PPRP+AS F A IP + RP Sbjct: 426 PTFLSSPLAAAAVSSALSLPPRPSASLFQAAAIPPALLRP 465
>DEC1_DROER (Q23933) Defective chorion-1 protein precursor (Fragments)| Length = 557 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +1 Query: 37 VSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGP 141 V S LA PP PA LGA P P P+ P Sbjct: 159 VGSFLAQLPPMPAIPSILGAAAPVPAPAPAPAATP 193
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 29.6 bits (65), Expect = 2.1 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +1 Query: 1 GPPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRPSGIRG 138 G PG +++ + S + + P P G +G P P P+G G Sbjct: 800 GEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAG 845
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 29.3 bits (64), Expect = 2.8 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Frame = +1 Query: 4 PPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPA----SDPRPSGIRGPFIQRFLLLSV 171 PP SAR + + RP SG G + P S P G +GP S Sbjct: 1395 PPRTSAR-----TPERELRTQRPLESGQAGPRQPLGVWQSQEEPPGSQGPHRHLERSWSS 1449 Query: 172 RHGGLCGQGSWHCG 213 + GGL G W CG Sbjct: 1450 QEGGLGPGGWWGCG 1463
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +1 Query: 1 GPPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRPSGIRG 138 G PG R++ + S + P P G +G P P P+G G Sbjct: 807 GEPGAPGRVMTSEGSSTITVPGPPGPPGAMGPPGPPGTPGPAGPAG 852
>SANT_PLAFN (P04928) S-antigen protein precursor| Length = 309 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 143 KGPLIPEGLGSEAGILAPRNPEAAGRGGVEARSEETAKISLADL 12 +GP G GSEAG P+ G GG + +++ +K S+ ++ Sbjct: 262 EGPKGTGGPGSEAGTEGPKGTGGPGSGGEHSHNKKKSKKSIMNM 305
>SANT_PLAFV (P09593) S-antigen protein precursor| Length = 375 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 143 KGPLIPEGLGSEAGILAPRNPEAAGRGGVEARSEETAKISLADL 12 +GP G GSEAG P+ G GG + +++ +K S+ ++ Sbjct: 328 EGPKGTGGPGSEAGTEGPKGTGGPGSGGEHSHNKKKSKKSIMNM 371
>NAGS_HUMAN (Q8N159) N-acetylglutamate synthase, mitochondrial precursor (EC| 2.3.1.1) (Amino-acid acetyltransferase) [Contains: N-acetylglutamate synthase long form; N-acetylglutamate synthase short form; N-acetylglutamate synthase conserved domain form] Length = 534 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +1 Query: 49 LASTPPRP----AASGFLGAKIPASDPRPSGIRGPFIQRFLLLSVRHGGLCGQGSWHCGR 216 LAS PR + G+ A I +P G P++ +F++ S R G GQ W C R Sbjct: 408 LASLRPRLHSIYVSEGYNAAAILTMEPVLGGT--PYLDKFVVSSSRQGQGSGQMLWECLR 465 Query: 217 K 219 + Sbjct: 466 R 466
>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 811 Score = 28.9 bits (63), Expect = 3.6 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%) Frame = +1 Query: 4 PPGRSARLIFAVSSDLASTPP-----RPAA-SGFLGAKIPASDPRPSGIR-GPFIQRFLL 162 PPG R+ +V + L + PP RP+A G + P P G R P QR L Sbjct: 110 PPGAVLRMALSVPAALEAPPPALGWRRPSAGQRAAGQRAEGQGPLPGGARLSPGRQRVLA 169 Query: 163 LSVRHGGL 186 + H GL Sbjct: 170 VLDDHPGL 177
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/64 (31%), Positives = 24/64 (37%) Frame = +1 Query: 1 GPPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGPFIQRFLLLSVRHG 180 GPPG +S+ TPPRP L P P+ + GP L R Sbjct: 142 GPPG-------PLSATSLQTPPRPPQPSILQPGSQVLPPPPTTLNGPGASPLPLPMYRPD 194 Query: 181 GLCG 192 GL G Sbjct: 195 GLSG 198
>DEC11_DROME (P18169) Defective chorion-1 protein, FC125 isoform precursor| Length = 1208 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +1 Query: 37 VSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGP 141 V S LA P P G LGA P P P+ P Sbjct: 159 VGSFLAQLPAMPTVPGLLGAAAPVPAPAPAPAAAP 193
>NDF2_RAT (Q63689) Neurogenic differentiation factor 2 (NeuroD2) (Brain bHLH| protein KW8) Length = 382 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 43 SDLASTPPRPAASGFLGAKIPASDPRPSGIRGPFIQRFLLLSVRHGGLCG 192 SD PP+P + GA PA +P +RG + L V+ G G Sbjct: 31 SDKGDAPPQPPPAPGSGAPGPARATKPVSLRGEEVPEPTLAEVKEEGELG 80
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 28.5 bits (62), Expect = 4.8 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Frame = -3 Query: 200 DPCPHSPPCRTDNSRNR*MKGPLIPEGLGSEAGILAPR-NPEAAGRGGVEARSEETAKIS 24 +P P PP R + + + GP P GL GI R NP G+ G+ + Sbjct: 1253 NPGPQGPPGRPGPTGFQGLPGPEGPRGLPGNGGIKGERGNPGQPGQPGLPGLKGDQGPPG 1312 Query: 23 LADLPG 6 + PG Sbjct: 1313 IQGNPG 1318
>DEC13_DROME (P18171) Defective chorion-1 protein, FC177 isoform precursor| Length = 1590 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +1 Query: 37 VSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGP 141 V S LA P P G LGA P P P+ P Sbjct: 159 VGSFLAQLPAMPTVPGLLGAAAPVPAPAPAPAAAP 193
>DEC12_DROME (P18170) Defective chorion-1 protein, FC106 isoform precursor| [Contains: Defective chorion-1 protein, FC106 isoform; FC106 S80; FC106 S60] Length = 950 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +1 Query: 37 VSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGP 141 V S LA P P G LGA P P P+ P Sbjct: 159 VGSFLAQLPAMPTVPGLLGAAAPVPAPAPAPAAAP 193
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +1 Query: 1 GPPGRSARLIFAVSSDLASTPPRPAASGFLGAKIPASDPRPSGIRGP 141 GPPG + + + P A+GF GA P PSG GP Sbjct: 848 GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 70 PAASGFLGAKIPASDPRPSGIRGP 141 P A+GF GA P PSGI GP Sbjct: 783 PGATGFPGAAGRTGPPGPSGITGP 806
>PYRF_CLOAB (Q97FS5) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 286 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 113 IPGLQESGGLSFSDSCYCQFGMGGCVGKGRGIV 211 IPG GG + S Y + G GG V RGI+ Sbjct: 222 IPGYGAQGGTAKEVSLYLREGNGGVVNSSRGIL 254
>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)| Length = 501 Score = 28.1 bits (61), Expect = 6.2 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 8/52 (15%) Frame = -3 Query: 191 PHSPPCRTDNSR--------NR*MKGPLIPEGLGSEAGILAPRNPEAAGRGG 60 P PP R N N+ GPL P LG PR P GRGG Sbjct: 314 PPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGG 365
>DEL1_CAEEL (Q19038) Degenerin del-1| Length = 664 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +2 Query: 113 IPGLQESGGLSFSDSCYCQFGMGGCVGKGRGIVEEKLDFKGGNV 244 +P SG + CYCQ MG CV + V +F+G + Sbjct: 239 VPNTTGSGNIP----CYCQLEMGYCVFQPESRVRRIWEFQGNKI 278
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 70 PAASGFLGAKIPASDPRPSGIRGP 141 P A+GF GA P PSGI GP Sbjct: 781 PGATGFPGAAGRTGPPGPSGISGP 804
>RPO8_VACCV (P04310) DNA-directed RNA polymerase 18 kDa polypeptide (EC| 2.7.7.6) Length = 161 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 125 QESGGLSFSDSCYCQFGMGGCVGKGRGIVEEKLDFKGG 238 ++SG +SFSDS YC F G G + ++ + G Sbjct: 110 RDSGTVSFSDSKYCFFRNGNAYDNGSEVTAVLMEAQQG 147
>RPO8_VACCC (P21034) DNA-directed RNA polymerase 18 kDa polypeptide (EC| 2.7.7.6) Length = 161 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 125 QESGGLSFSDSCYCQFGMGGCVGKGRGIVEEKLDFKGG 238 ++SG +SFSDS YC F G G + ++ + G Sbjct: 110 RDSGTVSFSDSKYCFFRNGNAYDNGSEVTAVLMEAQQG 147
>RPO8_VACCA (Q76ZS0) DNA-directed RNA polymerase 18 kDa polypeptide (EC| 2.7.7.6) Length = 161 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 125 QESGGLSFSDSCYCQFGMGGCVGKGRGIVEEKLDFKGG 238 ++SG +SFSDS YC F G G + ++ + G Sbjct: 110 RDSGTVSFSDSKYCFFRNGNAYDNGSEVTAVLMEAQQG 147
>K1472_HUMAN (Q9NX95) Protein KIAA1472| Length = 595 Score = 27.7 bits (60), Expect = 8.1 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = -3 Query: 224 QAFLPQCHDPCPHSPPCRTDNSRNR*MKGPLIPEGLGSEAGILAPRNPEAA 72 Q+ L + DPCP S D S M+ PE L + L PRNP +A Sbjct: 436 QSVLQKLQDPCPSSL-ASPDESEPDSMES--FPESLSALVVDLTPRNPNSA 483
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +2 Query: 98 KSPLPIPGLQESGGLSFSDSCYCQFGMGG-CVGKGRGIVEEKLDFKGGNVHVIT 256 + PL +P E GL S+ + GM C+G GR ++KLD G ++T Sbjct: 340 RKPLKLPA--EYHGLYLSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMTDILT 391
>EFG_SYNPX (Q7U4D2) Elongation factor G (EF-G)| Length = 690 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -3 Query: 131 IPEG-LGSEAGILAPRNPEAAGRGGVEARSEETAKISLADLPG 6 +PE LGS G L+ R + G+G + S+ +AK+ LA++ G Sbjct: 608 VPEDFLGSIIGDLSSRRGQVEGQGVEDGTSKISAKVPLAEMFG 650
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 27.7 bits (60), Expect = 8.1 Identities = 21/64 (32%), Positives = 25/64 (39%) Frame = -3 Query: 197 PCPHSPPCRTDNSRNR*MKGPLIPEGLGSEAGILAPRNPEAAGRGGVEARSEETAKISLA 18 P PH P NR GP P G AG + PR P +G G+ E + Sbjct: 963 PGPHGPVGPAGKHGNRGETGPSGPVG---PAGAVGPRGP--SGPQGIRGDKGEPGEKGPR 1017 Query: 17 DLPG 6 LPG Sbjct: 1018 GLPG 1021
>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1233 Score = 27.7 bits (60), Expect = 8.1 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = -3 Query: 248 HAHFHL*NQAFLPQCHDP-CPHSPPCRTDNSRNR*MKGPL 132 HAH HL P C CPH PPC + S GPL Sbjct: 1152 HAHAHL------PFCWGAVCPHLPPCASHGSWLSGAWGPL 1185
>CUPC4_CANPG (P81583) Cuticle protein CP1499 (CPCP1499)| Length = 148 Score = 27.7 bits (60), Expect = 8.1 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +1 Query: 19 ARLIFAVSSDLASTPPRPAAS----GFLGAKIPASDPRPS 126 AR A + L +TPP+PA G L +KIPA P S Sbjct: 13 ARFFLAYQAALPATPPKPADPPKWYGPLASKIPAGLPGSS 52
>ZN326_PONPY (Q5RCA4) Zinc finger protein 326| Length = 579 Score = 27.7 bits (60), Expect = 8.1 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -3 Query: 122 GLGSEAGILAPRNPEAAGRGGVEARSEETAKISLADLP 9 G G E G++ E G G VE EETAK AD P Sbjct: 539 GEGGEVGVVG----EVEGVGKVEEVEEETAKEEPADFP 572
>Y264_METEX (Q8GEK8) UPF0264 protein ORF22| Length = 236 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 7 PGRSARLIFAVSSDLASTPPRPAASGFLGAKI 102 PGR ++FA P R AA+GF+GA I Sbjct: 113 PGRVIGVLFAEDDVAEDGPARLAAAGFVGAMI 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,904,006 Number of Sequences: 219361 Number of extensions: 743716 Number of successful extensions: 3081 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3072 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
