ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9f22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470536.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1920 Score = 244 bits (123), Expect = 1e-61 Identities = 234/272 (86%) Strand = Plus / Plus Query: 11 tgctttgtgagggatgttggattcttcctgatcaccttggtggcactgtcgattatgctg 70 |||||||||||||||||||| ||||| ||||| || | || |||||||||||||| || Sbjct: 703 tgctttgtgagggatgttgggttctttctgatgactctagtagcactgtcgattattttg 762 Query: 71 atcgtcgggaaggtgaccgtctggggagctatgctgtttgtgtcgatctatgnggtttat 130 || || |||||||||||||| |||||||| || ||||||||||||| |||| ||||||| Sbjct: 763 attgttgggaaggtgaccgtttggggagcgattatgtttgtgtcgatttatgtggtttat 822 Query: 131 gcattngtggttgctgcanatgagctattaaggaagcacgcacggatgctgaagtttgat 190 || || ||||| |||||| ||||| |||| |||||||| ||||||| ||| ||||||||| Sbjct: 823 gcgtttgtggtggctgcaaatgaggtattgaggaagcatgcacggaggcttaagtttgat 882 Query: 191 gtagtcacaccattgcttcctgtgaggggaagtatcttcgcacaaggaatagaggaggat 250 || ||||||||| |||| |||||||| || |||||||| |||||||||| ||| || ||| Sbjct: 883 gtggtcacaccactgctgcctgtgagagggagtatctttgcacaaggaacagaagatgat 942 Query: 251 gattctgtttacagttcacttcttgaggagga 282 || || || ||||||||||||||||||||||| Sbjct: 943 gagtccgtgtacagttcacttcttgaggagga 974
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 244 bits (123), Expect = 1e-61 Identities = 234/272 (86%) Strand = Plus / Minus Query: 11 tgctttgtgagggatgttggattcttcctgatcaccttggtggcactgtcgattatgctg 70 |||||||||||||||||||| ||||| ||||| || | || |||||||||||||| || Sbjct: 4177285 tgctttgtgagggatgttgggttctttctgatgactctagtagcactgtcgattattttg 4177226 Query: 71 atcgtcgggaaggtgaccgtctggggagctatgctgtttgtgtcgatctatgnggtttat 130 || || |||||||||||||| |||||||| || ||||||||||||| |||| ||||||| Sbjct: 4177225 attgttgggaaggtgaccgtttggggagcgattatgtttgtgtcgatttatgtggtttat 4177166 Query: 131 gcattngtggttgctgcanatgagctattaaggaagcacgcacggatgctgaagtttgat 190 || || ||||| |||||| ||||| |||| |||||||| ||||||| ||| ||||||||| Sbjct: 4177165 gcgtttgtggtggctgcaaatgaggtattgaggaagcatgcacggaggcttaagtttgat 4177106 Query: 191 gtagtcacaccattgcttcctgtgaggggaagtatcttcgcacaaggaatagaggaggat 250 || ||||||||| |||| |||||||| || |||||||| |||||||||| ||| || ||| Sbjct: 4177105 gtggtcacaccactgctgcctgtgagagggagtatctttgcacaaggaacagaagatgat 4177046 Query: 251 gattctgtttacagttcacttcttgaggagga 282 || || || ||||||||||||||||||||||| Sbjct: 4177045 gagtccgtgtacagttcacttcttgaggagga 4177014
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 244 bits (123), Expect = 1e-61 Identities = 234/272 (86%) Strand = Plus / Minus Query: 11 tgctttgtgagggatgttggattcttcctgatcaccttggtggcactgtcgattatgctg 70 |||||||||||||||||||| ||||| ||||| || | || |||||||||||||| || Sbjct: 4177394 tgctttgtgagggatgttgggttctttctgatgactctagtagcactgtcgattattttg 4177335 Query: 71 atcgtcgggaaggtgaccgtctggggagctatgctgtttgtgtcgatctatgnggtttat 130 || || |||||||||||||| |||||||| || ||||||||||||| |||| ||||||| Sbjct: 4177334 attgttgggaaggtgaccgtttggggagcgattatgtttgtgtcgatttatgtggtttat 4177275 Query: 131 gcattngtggttgctgcanatgagctattaaggaagcacgcacggatgctgaagtttgat 190 || || ||||| |||||| ||||| |||| |||||||| ||||||| ||| ||||||||| Sbjct: 4177274 gcgtttgtggtggctgcaaatgaggtattgaggaagcatgcacggaggcttaagtttgat 4177215 Query: 191 gtagtcacaccattgcttcctgtgaggggaagtatcttcgcacaaggaatagaggaggat 250 || ||||||||| |||| |||||||| || |||||||| |||||||||| ||| || ||| Sbjct: 4177214 gtggtcacaccactgctgcctgtgagagggagtatctttgcacaaggaacagaagatgat 4177155 Query: 251 gattctgtttacagttcacttcttgaggagga 282 || || || ||||||||||||||||||||||| Sbjct: 4177154 gagtccgtgtacagttcacttcttgaggagga 4177123
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 244 bits (123), Expect = 1e-61 Identities = 234/272 (86%) Strand = Plus / Minus Query: 11 tgctttgtgagggatgttggattcttcctgatcaccttggtggcactgtcgattatgctg 70 |||||||||||||||||||| ||||| ||||| || | || |||||||||||||| || Sbjct: 77922 tgctttgtgagggatgttgggttctttctgatgactctagtagcactgtcgattattttg 77863 Query: 71 atcgtcgggaaggtgaccgtctggggagctatgctgtttgtgtcgatctatgnggtttat 130 || || |||||||||||||| |||||||| || ||||||||||||| |||| ||||||| Sbjct: 77862 attgttgggaaggtgaccgtttggggagcgattatgtttgtgtcgatttatgtggtttat 77803 Query: 131 gcattngtggttgctgcanatgagctattaaggaagcacgcacggatgctgaagtttgat 190 || || ||||| |||||| ||||| |||| |||||||| ||||||| ||| ||||||||| Sbjct: 77802 gcgtttgtggtggctgcaaatgaggtattgaggaagcatgcacggaggcttaagtttgat 77743 Query: 191 gtagtcacaccattgcttcctgtgaggggaagtatcttcgcacaaggaatagaggaggat 250 || ||||||||| |||| |||||||| || |||||||| |||||||||| ||| || ||| Sbjct: 77742 gtggtcacaccactgctgcctgtgagagggagtatctttgcacaaggaacagaagatgat 77683 Query: 251 gattctgtttacagttcacttcttgaggagga 282 || || || ||||||||||||||||||||||| Sbjct: 77682 gagtccgtgtacagttcacttcttgaggagga 77651
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 244 bits (123), Expect = 1e-61 Identities = 234/272 (86%) Strand = Plus / Minus Query: 11 tgctttgtgagggatgttggattcttcctgatcaccttggtggcactgtcgattatgctg 70 |||||||||||||||||||| ||||| ||||| || | || |||||||||||||| || Sbjct: 5900 tgctttgtgagggatgttgggttctttctgatgactctagtagcactgtcgattattttg 5841 Query: 71 atcgtcgggaaggtgaccgtctggggagctatgctgtttgtgtcgatctatgnggtttat 130 || || |||||||||||||| |||||||| || ||||||||||||| |||| ||||||| Sbjct: 5840 attgttgggaaggtgaccgtttggggagcgattatgtttgtgtcgatttatgtggtttat 5781 Query: 131 gcattngtggttgctgcanatgagctattaaggaagcacgcacggatgctgaagtttgat 190 || || ||||| |||||| ||||| |||| |||||||| ||||||| ||| ||||||||| Sbjct: 5780 gcgtttgtggtggctgcaaatgaggtattgaggaagcatgcacggaggcttaagtttgat 5721 Query: 191 gtagtcacaccattgcttcctgtgaggggaagtatcttcgcacaaggaatagaggaggat 250 || ||||||||| |||| |||||||| || |||||||| |||||||||| ||| || ||| Sbjct: 5720 gtggtcacaccactgctgcctgtgagagggagtatctttgcacaaggaacagaagatgat 5661 Query: 251 gattctgtttacagttcacttcttgaggagga 282 || || || ||||||||||||||||||||||| Sbjct: 5660 gagtccgtgtacagttcacttcttgaggagga 5629
>dbj|BS000124.1| Pan troglodytes chromosome 22 clone:PTB-069P04, map 22, complete sequences Length = 84339 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 196 cacaccattgcttcctgtgaggg 218 ||||||||||||||||||||||| Sbjct: 11767 cacaccattgcttcctgtgaggg 11789
>ref|XM_545874.2| PREDICTED: Canis familiaris similar to Zinc finger protein basonuclin 1 (LOC488756), mRNA Length = 4508 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 tgctgaagtttgatgtagtca 197 ||||||||||||||||||||| Sbjct: 1997 tgctgaagtttgatgtagtca 1977
>gb|AY070129.1| Thyasira sarsi 28S ribosomal RNA gene, partial sequence Length = 1071 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tcgtcgggaaggtgaccgtc 91 |||||||||||||||||||| Sbjct: 525 tcgtcgggaaggtgaccgtc 544
>gb|AC151725.26| Medicago truncatula clone mth2-164l16, complete sequence Length = 115069 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccattgcttcctgtgagggg 219 |||||||||||||||||||| Sbjct: 61980 ccattgcttcctgtgagggg 61961
>gb|AE014183.1| Mus musculus piebald deletion region section 11 of 11 of the complete sequence Length = 249616 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcacaccattgcttcctgtg 214 |||||||||||||||||||| Sbjct: 84563 tcacaccattgcttcctgtg 84544 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,987,539 Number of Sequences: 3902068 Number of extensions: 1987539 Number of successful extensions: 34146 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34114 Number of HSP's gapped (non-prelim): 32 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
