>LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Kalinin|
           B1 chain)
          Length = 1168

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 53  TTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTD 232
           T LR +    +P+P R + P  A  A    R    C  +GH  R  PN G     VR+ +
Sbjct: 215 TNLRVNFTKLAPVPQRGSYPPSAYFAVSQLRLQGSCFCHGHADRCAPNPGGSTTAVRVNN 274

>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 27.7 bits (60), Expect(2) = 1.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 71  SQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRT 187
           S+PT+P P RR+  AG + AP      S  +  G +  T
Sbjct: 370 SEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETT 408



 Score = 22.3 bits (46), Expect(2) = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 190 PQPRGQDLRGAPHRWIHPQ 246
           P+   + LRGAPHR   P+
Sbjct: 422 PEEPSRFLRGAPHRHSMPE 440

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 169 RPQLADVPQPRGQDLRGAPHRWIHPQERQH 258
           RP++A  P P        PH   HPQ R H
Sbjct: 23  RPEIAHTPDPAALGEESTPHAHAHPQARHH 52

>ZCH12_MOUSE (Q9CZA5) Zinc finger CCHC domain-containing protein 12|
           (Smad-interacting zinc finger protein)
          Length = 402

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 140 TRRCSHCSYNGHNSRTCPNRGVK 208
           T  CSHC   GH+  TC N   K
Sbjct: 345 TIHCSHCGEEGHSKETCDNESDK 367

>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3075

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 56   TLRFSSQPTSPLPFRRATPAGALAAPG-MTRRCSHCSYNGHNSRTCPNRG 202
            T+ FS Q  +P   R   PAG+   P  +   C  CS N H+    PN G
Sbjct: 1368 TVGFSCQDCAPGYHRGKLPAGSDRGPRPLVAPCVPCSCNNHSDTCDPNTG 1417

>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2|
           (Pseudo-response regulator 2) (TOC2 protein)
          Length = 535

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 380 SANRERKKGVPWTEEEHRRFLLGLQKLG 463
           S N+  +K V WT E H++F+  +++LG
Sbjct: 290 SGNKTSRKKVDWTPELHKKFVQAVEQLG 317

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +1

Query: 127 GSGDDEAVLALQLQRPQL------ADVPQPRGQDL---RGAPHRWIHPQERQH 258
           G GD+E + A   + P +      +  P P G  L     AP RWI P +R+H
Sbjct: 502 GPGDEEDLAAATTEEPLITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREH 554

>ZCH12_HUMAN (Q6PEW1) Zinc finger CCHC domain-containing protein 12|
          Length = 402

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 140 TRRCSHCSYNGHNSRTCPNRGVK 208
           T RCS+C   GH+  TC N   K
Sbjct: 344 TIRCSYCGEEGHSKETCDNESDK 366

>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 CSHCSYNGHNSRTCPNRGVKIF 214
           C++C+ NGH    CP++  K+F
Sbjct: 114 CTNCNANGHYKSQCPHKWKKVF 135

>BIK1_YEAST (P11709) Nuclear fusion protein BIK1|
          Length = 440

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 PAGALAAPGMTRRCSHCSYNGHNSRTCPN 196
           PA      G  + C HC   GHN+  CP+
Sbjct: 403 PAPVDTTAGRQQWCEHCDTMGHNTAECPH 431

>SSBP4_HUMAN (Q9BWG4) Single-stranded DNA-binding protein 4|
          Length = 385

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 56  TLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTDG 235
           TLR  SQP + LP  +    GA+      R   H S  G   R  P RG+   G +   G
Sbjct: 159 TLRMPSQPPAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216

Query: 236 SIR 244
            +R
Sbjct: 217 GMR 219

>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p|
           Ib)
          Length = 308

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = +2

Query: 68  SSQPTSPLPFRRATPAGALAAPGMTRRC------------SHCSYNGHNSRTCPNRGVKI 211
           SS+P SP P R ++P  A  APG+  +             +H        R CP+R +++
Sbjct: 86  SSRPPSPSPPRASSPTSAAKAPGLIPKLDTAYDVAYKAAEAHPRGQVRRLRHCPHRSLRV 145

>ZCH12_RAT (Q5HZA3) Zinc finger CCHC domain-containing protein 12|
          Length = 401

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 TRRCSHCSYNGHNSRTCPN 196
           T  CSHC   GH+  TC N
Sbjct: 344 TVHCSHCGEEGHSKETCDN 362

>PAM17_USTMA (Q4P983) Presequence translocated-associated motor subunit PAM17,|
           mitochondrial precursor
          Length = 232

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 17  LRCSXXXXXXTATTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYN 169
           L  S      ++++ R +  PTSP+ F  ++ + + ++P  +R  SH S++
Sbjct: 33  LSTSSKVASSSSSSNRGTFSPTSPILFSASSSSSSSSSPSSSRELSHLSWD 83

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 RRCSHCSYNGHNSRTCPNRG 202
           R+C  C  +GH SR CP+ G
Sbjct: 196 RKCYKCGESGHMSRECPSAG 215

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
            III alpha)
          Length = 1250

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 92   PFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNR 199
            P  R+ P    +    TRRC  C   GH    CP +
Sbjct: 1210 PPGRSQPTAITSDGPKTRRCGLCRKEGHTRNKCPRK 1245

>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  SSQPTSPLPFRRATPAGALAAPG-MTRRCSHCSYNGHNSRTCPNRGVKIF 214
           SS+P+SP P +RA+P G++++ G  +R  S  S +G    +C   G  +F
Sbjct: 107 SSRPSSPRP-QRASPNGSMSSAGNSSRNSSQSSSDG----SCKTSGEMVF 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,909,414
Number of Sequences: 219361
Number of extensions: 819781
Number of successful extensions: 3155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3155
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)