>RT31_MOUSE (Q61733) 28S ribosomal protein S31, mitochondrial precursor (S31mt)|
           (MRP-S31) (Imogen 38)
          Length = 384

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
 Frame = +3

Query: 315 ILRRLLSFLKPDTFQGAVKAMNERILS--VLDASGSGRV----DLGMFFAIIAPICSGPV 476
           +L R+ +FL+P  F G   +   R +S  VL A+ SG V    ++   F     ICS  V
Sbjct: 1   MLHRIPAFLRPRPFSGLPLSCGNRDVSVAVLPAAQSGAVRTENNIQRHFCTSRSICSKKV 60

Query: 477 DRRKRVVFDALLWRPASEGGRG-QIRRSDALSYIK 578
           D  + V  + +  + A   GRG +  + D L  IK
Sbjct: 61  D--QSVPANEISQKAAESQGRGKETLKKDLLDIIK 93

>Y1316_MYCLE (P46509) Putative AAA-family ATPase ML1316|
          Length = 609

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 218
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEVSTLREVLADG------HRALVVGHADEE 183

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
            [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
 Frame = -1

Query: 560  ITPPDLAPATFACRTPKE---------CIENDTLAPIHWTRTDWSNDGKEHPEINA 420
            I+PPD +P T   RTP +          IE    +P H    D+S    +HP + A
Sbjct: 1610 ISPPDFSPKTAKSRTPVQDHRSEQSSMSIEFGQESPEHSLAMDFSRQSPDHPTVGA 1665

>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)|
            (MAP1(X)) [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = -1

Query: 560  ITPPDLAPATFACRTPKE---------CIENDTLAPIHWTRTDWSNDGKEHPEINAA 417
            I+PPD +P T   RTP +          IE    +P H    D+S    +HP + A+
Sbjct: 1615 ISPPDFSPKTAKSRTPVQDHRSEQSSMSIEFGQESPEHSFAMDFSRQSPDHPTLGAS 1671

>GUC1A_CHICK (P79880) Guanylyl cyclase-activating protein 1 (GCAP 1) (Guanylate|
           cyclase activator 1A)
          Length = 198

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 381 ERILSVLDASGSGRVDLGMFFAIIAPICSGPVDRRKRVVFDALLWRPASEGGRGQIRRSD 560
           E++    D +  G +D   + A ++ +  G VD++ R  F           G G I R +
Sbjct: 55  EQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLY-----DVDGNGCIDRGE 109

Query: 561 ALSYIKLLRAV 593
            L+ IK +RA+
Sbjct: 110 LLNIIKAIRAI 120

>Y2139_MYCBO (P63346) Putative AAA-family ATPase Mb2139c|
          Length = 609

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 218
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEISTLREILADG------HRALVVGHADEE 183

>Y2115_MYCTU (P63345) Putative AAA-family ATPase Rv2115c/MT2175|
          Length = 609

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 218
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEISTLREILADG------HRALVVGHADEE 183

>FRVR_ECOLI (P32152) Putative frv operon regulatory protein [Includes: Putative|
           phosphotransferase EIIA component (EC 2.7.1.-) (Putative
           PTS system EIIA component)]
          Length = 582

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 392 ENSFIHCLHCTLEGVWLEER*EPAKNNLKSCFP 294
           EN   H L C    VW+ E  + + NNLK+ +P
Sbjct: 274 ENITGHLLRCLAAPVWIAEHRQSSMNNLKAAWP 306

>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
            protein-like 4)
          Length = 1216

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 443  CH-HCSNLFWSSG*AQACRFRCTPLASCKRRWQGPDQEE 556
            CH HC      S   QA   RC PLA+C+ +W   D  +
Sbjct: 954  CHLHCLG---GSAQLQALAHRCPPLAACQAKWPPKDTSQ 989

>SASA_SYNPX (Q7U871) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)|
          Length = 383

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 141 LRQDLANALDIRAFERTTKLGHCDVELLRKEMNETDVPVSYSGTGIPEKSIRKAALE 311
           +RQ L N L+  A + T   GH  + +L +     +V V  SG GIP +  ++  L+
Sbjct: 258 MRQVLLNLLE-NALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIPTEEQQRIFLD 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,676,555
Number of Sequences: 219361
Number of extensions: 1940060
Number of successful extensions: 5791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5788
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)