ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8p18 |
|---|---|
| Clone Library Name | barley_pub |
>NOG1_YEAST (Q02892) Nucleolar GTP-binding protein 1| Length = 647 Score = 30.0 bits (66), Expect = 1.6 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Frame = +1 Query: 19 SVLGHDPRRLPDR-------NGWFERQCSFEDGAQRPSMSTLDEEYRKQSARELIDAYGN 177 S LGHD L D+ N + ER G Q ++ + + + L+D + Sbjct: 536 STLGHDMSALQDKQNRAARKNRYVERGSDVVFGDQDALTASTENGVKLRQTDRLLDGVAD 595 Query: 178 SQGNDADERLPKMQRLESNGMAGRSSAQK 264 +R+ KM+R E N A + + + Sbjct: 596 GSMRSKADRMAKMERRERNRHAKQGESDR 624
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 29.6 bits (65), Expect = 2.1 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = +1 Query: 79 CSFEDGAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADERLPKMQRLE 228 C+F G S S L E Y Q REL+ A G SQ E+ P+ +R+E Sbjct: 550 CAFRAGMITESHSCLSELYSGQRVRELL-AQGVSQSR-YHEKTPEQERME 597
>NOG1_CANGA (Q6FRV0) Nucleolar GTP-binding protein 1| Length = 645 Score = 28.9 bits (63), Expect = 3.6 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Frame = +1 Query: 19 SVLGHDPRRLPDRN-GWFERQCSFEDGA-----QRPSMSTLDEEYRKQSARELIDAYGNS 180 + LGHD L D++ E+ E GA Q SM++ + + + L+D + Sbjct: 535 ATLGHDMSSLQDKHRAAAEKSRYVETGADVVFGQNDSMASGSNGGKLRQSDRLLDGVADG 594 Query: 181 QGNDADERLPKMQRLESNGMAGRSSAQKWLT 273 +R+ K+QR + N A + A + T Sbjct: 595 SMRSKADRMAKLQRRQRNRDARQGEADRHAT 625
>SMYD2_HUMAN (Q9NRG4) SET and MYND domain-containing protein 2 (HSKM-B)| Length = 433 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 113 IEGRCAPSSKEHCRSNQPFLSGNLLGSCP 27 +E C+P R+ QPF G+LL SCP Sbjct: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCP 37
>RPOB_NEIG1 (Q5F5R5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = +1 Query: 46 LPDRNGWFERQCSFEDGAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADERLPKMQRL 225 LP R+ WF+ + + ED A++ + L + +++ A EL + + DE P +Q++ Sbjct: 1032 LPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYE-IKKKKLTQGDELQPGVQKM 1090
>DGKG_HUMAN (P49619) Diacylglycerol kinase gamma (EC 2.7.1.107) (Diglyceride| kinase gamma) (DGK-gamma) (DAG kinase gamma) Length = 791 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +2 Query: 38 LEDCLIEMVGLNDNVLLRMVHNGLR*A--RLMKNIGNKVQENLLMPMEI 178 L D L+E+VGL + + ++ GL+ A RL + ++ N L+PM++ Sbjct: 700 LSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCASVTIRTNKLLPMQV 748
>DGKG_MOUSE (Q91WG7) Diacylglycerol kinase gamma (EC 2.7.1.107) (Diglyceride| kinase gamma) (DGK-gamma) (DAG kinase gamma) (88 kDa diacylglycerol kinase) Length = 788 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +2 Query: 38 LEDCLIEMVGLNDNVLLRMVHNGLR*A--RLMKNIGNKVQENLLMPMEI 178 L D L+E+VGL + + ++ GL+ A RL + ++ N L+PM++ Sbjct: 697 LSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCSSVTIRTNKLLPMQV 745
>FAM5A_CHICK (Q7ZZR3) Protein FAM5A precursor (BMP/retinoic acid-inducible| neural-specific protein 1) Length = 761 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 218 CILGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGRCAPSSKEHCRSNQ 63 CI+G +S ++ S+++++LC + L GRC P + + RS Q Sbjct: 428 CIIGGNNSCAM------CSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQ 473
>FAM5A_BOVIN (Q5E9L2) Protein FAM5A precursor| Length = 761 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 218 CILGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGRCAPSSKEHCRSNQ 63 CI+G +S ++ S+++++LC + L GRC P + + RS Q Sbjct: 428 CIIGGNNSCAM------CSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQ 473
>FAM5A_RAT (Q925T8) Protein FAM5A precursor (Deleted in bladder cancer 1| protein homolog) (BMP/retinoic acid-inducible neural-specific protein 1) Length = 760 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 218 CILGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGRCAPSSKEHCRSNQ 63 CI+G +S ++ S+++++LC + L GRC P + + RS Q Sbjct: 428 CIIGGNNSCAM------CSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQ 473
>FAM5A_MOUSE (Q920P3) Protein FAM5A precursor (Deleted in bladder cancer 1| protein homolog) (BMP/retinoic acid-inducible neural-specific protein 1) Length = 760 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 218 CILGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGRCAPSSKEHCRSNQ 63 CI+G +S ++ S+++++LC + L GRC P + + RS Q Sbjct: 428 CIIGGNNSCAM------CSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQ 473
>FAM5A_HUMAN (O60477) Protein FAM5A precursor (Deleted in bladder cancer 1| protein) Length = 761 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = -2 Query: 218 CILGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGRCAPSSKEHCRSNQ 63 C++G +S ++ S+++++LC + L GRC P + + RS Q Sbjct: 428 CVIGGNNSCAM------CSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQ 473
>Y425_CAUCR (Q9AB09) Hypothetical UPF0324 membrane protein CC0425| Length = 465 Score = 28.1 bits (61), Expect = 6.1 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Frame = -2 Query: 269 SHFCALDLPAMPFDSSRCI----LGSLSSASLP*EFP*ASISSLALCFLYSSSSVLIEGR 102 S F AL PA+ + + +G+L+ A+L A I++ A C + +S+ L + Sbjct: 216 SEFAALGGPAVLASGAVVLGGLGIGALAGAALGLPLAEALIAAAA-CSICGASAALAASQ 274 Query: 101 CAPSSKEHCRSNQPFLSG-NLLGS 33 APSS E+ R+ + G NLL + Sbjct: 275 AAPSSPENQRTTALVIVGVNLLST 298
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = +1 Query: 106 PSMSTLDEEYRKQSARELIDAYGNSQGNDADERLPKMQRLESNGMAGRSSAQK 264 P+M+ ++ +YR+ R+L+ Q ++ + + GMAG S Q+ Sbjct: 2181 PNMTNMNPQYREMVRRQLLQHQQQQQQQQQQQQQQQNSASLAGGMAGHSQFQQ 2233
>RPOB_NEIMB (Q59622) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +1 Query: 46 LPDRNGWFERQCSFEDGAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADERLPKMQRL 225 LP R+ WF+ + + ED A++ + + + +++ A EL + + DE P +Q++ Sbjct: 1032 LPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYE-IKKKKLTQGDELQPGVQKM 1090
>RPOB_NEIMA (P57009) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +1 Query: 46 LPDRNGWFERQCSFEDGAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADERLPKMQRL 225 LP R+ WF+ + + ED A++ + + + +++ A EL + + DE P +Q++ Sbjct: 1032 LPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYE-IKKKKLTQGDELQPGVQKM 1090
>BOB1_YEAST (P38041) Protein BOB1 (BEM1-binding protein)| Length = 980 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -3 Query: 115 SSKAVVHHPQKNIVVQTNH 59 SS A HHP +N VV NH Sbjct: 502 SSNATSHHPNRNSVVYNNH 520
>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)| (Fragments) Length = 368 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 13 SHSVLGHDPRRLPDRNGWFERQCSFEDGAQRPSMSTLDEEYR 138 +H VLG+ N W+ Q SFE+ R S+ L + YR Sbjct: 212 AHRVLGYSS------NSWYADQGSFEEPEGRESLQKLWQRYR 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,883,219 Number of Sequences: 219361 Number of extensions: 702696 Number of successful extensions: 1526 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1526 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
