>CUBN_CANFA (Q9TU53) Cubilin precursor|
          Length = 3620

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 90   TYAASHPPPFLPSRSQLSWMRFLTDALLSSP 182
            TY  S PPP + S S   W++F +D L S P
Sbjct: 1119 TYCGSIPPPRIISHSNKLWLQFTSDFLGSGP 1149

>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 355 GDGAEQGTSDKVTNAKRGEKDWHRSSGGTQPAGSGRGR 468
           G G   G  D+    + G   ++RSSGG +P G G GR
Sbjct: 204 GGGYGGGQQDRGGRGRGGGGGYNRSSGGYEPRGRGGGR 241

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 25.0 bits (53), Expect(2) = 2.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 203 RGNIARRRPLEEKWEEPERPRVQHDQRYDRGR 298
           +G      P ++    PE P+ +HD R D G+
Sbjct: 739 KGESRPETPKQKNEGRPETPKHRHDNRRDSGK 770



 Score = 23.9 bits (50), Expect(2) = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 304 KMRRCEAIKQQHNQLRRGDGAEQGTSDKVTNAKRGEKDWHR 426
           K  R EA+KQ+ +     +   +   +K  +  RGE + HR
Sbjct: 794 KSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESERHR 834

>SCOT_HUMAN (P55809) Succinyl-CoA:3-ketoacid-coenzyme A transferase 1,|
           mitochondrial precursor (EC 2.8.3.5) (Somatic-type
           succinyl CoA:3-oxoacid CoA-transferase) (Scot-S)
          Length = 520

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 489 LQGRLPV---PASTTPSRLRAAGAPVPVLLTPLGVRDLV 382
           L G L V   P  T   R+RA GA VP   TP G   LV
Sbjct: 127 LSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLV 165

>ADA23_HUMAN (O75077) ADAM 23 precursor (A disintegrin and metalloproteinase|
           domain 23) (Metalloproteinase-like, disintegrin-like,
           and cysteine-rich protein 3) (MDC-3)
          Length = 832

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 479 GCRCRPLPLPAGCVPPELRCQSFSPRLAFVTLSEVPCSAPSPRRSWLCCCLMASH 315
           G  C P   PAG VP     ++   RL  V L   P +A S  R+W      A H
Sbjct: 20  GASCGPQRGPAGSVPASAPARTPPCRLLLVLLLLPPLAASSRPRAWGAAAPSAPH 74

>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
 Frame = -2

Query: 494 MLSRDGCRCRPLPLPAGCVPPELRCQSFSPRLAFVTLSEVPCSAPSPRRSW-------LC 336
           M++  GCRC+P   PA     +  CQ+    L   +    PCS P P RS        +C
Sbjct: 277 MVAVGGCRCQPGYQPA---RGDKACQACPRGLYKASAGNAPCS-PCPARSHAANPAAPVC 332

Query: 335 CCLMASHRRIFSFFLDHSXXXXXXXXXXAPPTSPQE 228
            CL   +R         +           PP++PQE
Sbjct: 333 PCLEGFYR---------ASSDPPEAPCTGPPSAPQE 359

>PSP2_YEAST (P50109) Protein PSP2 (Mitochondrial regulator of splicing 15)|
          Length = 578

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 331 QQHNQLRRGDG-AEQGTSDKVTNAKRGEKDWHRSSGGTQPAGSGRGR 468
           QQ++  +   G   QG +D + N  RG  +    +GG++  G GRGR
Sbjct: 498 QQYSIFKPASGFLGQGNNDSIRNNGRGNYNSSGMNGGSRGRGFGRGR 544

>SCOA_HELPJ (Q9ZLE3) Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A|
           (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase)
           (OXCT A)
          Length = 232

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 489 LQGRLPV---PASTTPSRLRAAGAPVPVLLTPLGVRDLV 382
           L G + V   P  T    LRA GA +P   TP GV  L+
Sbjct: 89  LNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLI 127

>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 340 NQLRRGDGAEQGTSDKVTNAKRGEKDWHRSSGGTQPAGSGRGR 468
           NQ + G G   G  D+    + G   ++RSSGG +P G G GR
Sbjct: 193 NQDQSG-GYGGGQQDRGGRGRGGGGGYNRSSGGYEPRGRGGGR 234

>SCOT_CAEEL (Q09450) Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,|
           mitochondrial precursor (EC 2.8.3.5) (3-oxoacid
           CoA-transferase)
          Length = 521

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 468 PASTTPSRLRAAGAPVPVLLTPLG 397
           P  T   R+RAAGA VP   TP G
Sbjct: 134 PQGTLAERIRAAGAGVPAFYTPTG 157

>SCOT2_HUMAN (Q9BYC2) Succinyl-CoA:3-ketoacid-coenzyme A transferase 2,|
           mitochondrial precursor (EC 2.8.3.5) (Testis-specific
           succinyl CoA:3-oxoacid CoA-transferase) (SCOT-t)
          Length = 517

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 468 PASTTPSRLRAAGAPVPVLLTPLGVRDLV 382
           P  T   R+RA GA VP   TP G   LV
Sbjct: 137 PQGTLAERIRAGGAGVPAFYTPTGYGTLV 165

>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (HEP)
          Length = 1006

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
 Frame = -2

Query: 494 MLSRDGCRCRPLPLPAGCVPPELRCQSFSPRLAFVTLSEVPCSAPSPRRSW-------LC 336
           M++  GCRC+P   PA     +  CQ+    L   +    PCS P P RS        +C
Sbjct: 278 MVAVGGCRCQPGYQPA---RGDKACQACPRGLYKSSAGNAPCS-PCPARSHAPNPAAPVC 333

Query: 335 CCLMASHRRIFSFFLDHSXXXXXXXXXXAPPTSPQE 228
            CL   +R         +           PP++PQE
Sbjct: 334 PCLEGFYR---------ASSDPPEAPCTGPPSAPQE 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,655,215
Number of Sequences: 219361
Number of extensions: 1054869
Number of successful extensions: 4130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4128
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)