>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  294 bits (752), Expect(2) = 5e-87
 Identities = 144/144 (100%), Positives = 144/144 (100%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY
Sbjct: 284 LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 343

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA
Sbjct: 344 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 403

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           DTYMSQAALGDANQDAMKTGSFYG
Sbjct: 404 DTYMSQAALGDANQDAMKTGSFYG 427



 Score = 47.0 bits (110), Expect(2) = 5e-87
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 481 GKGAQQGTLPVPEGCTDQNA 540
           GKGAQQGTLPVPEGCTDQNA
Sbjct: 427 GKGAQQGTLPVPEGCTDQNA 446

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  261 bits (668), Expect = 7e-70
 Identities = 122/144 (84%), Positives = 136/144 (94%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTRDDR+GVCKGIF+TDNV DE +VKIVD+FPGQSIDFFGALRARVY
Sbjct: 284 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVY 343

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA
Sbjct: 344 DDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLA 403

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           + Y+S+AALGDAN DAMKTGSFYG
Sbjct: 404 EQYLSEAALGDANSDAMKTGSFYG 427

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  261 bits (668), Expect = 7e-70
 Identities = 122/144 (84%), Positives = 136/144 (94%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV DE+VV++VDTFPGQSIDFFGALRARVY
Sbjct: 281 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVY 340

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLA
Sbjct: 341 DDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLA 400

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           D Y+S+AALG AN DAMKTG+FYG
Sbjct: 401 DKYLSEAALGQANDDAMKTGAFYG 424

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  246 bits (627), Expect(2) = 2e-68
 Identities = 114/144 (79%), Positives = 132/144 (91%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV+D+ +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 294 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVY 353

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
            DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLA
Sbjct: 354 HDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLA 413

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           D YMS+AALGDAN DA+K G+FYG
Sbjct: 414 DKYMSEAALGDANNDAIKRGTFYG 437



 Score = 33.1 bits (74), Expect(2) = 2e-68
 Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 478 GGKGAQQ-GTLPVPEGCTDQNA 540
           GG+ AQQ G +PVPEGCTD  A
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQA 458

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  238 bits (608), Expect(2) = 4e-67
 Identities = 113/144 (78%), Positives = 129/144 (89%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TD + DE +V +VD FPGQSIDFFGALRARVY
Sbjct: 294 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVY 353

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA
Sbjct: 354 DDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLA 413

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           +TY+SQAALGDAN DA+  G+FYG
Sbjct: 414 ETYLSQAALGDANADAIGRGTFYG 437



 Score = 35.8 bits (81), Expect(2) = 4e-67
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 481 GKGAQQGTLPVPEGCTD 531
           GKGAQQ  LPVPEGCTD
Sbjct: 437 GKGAQQVNLPVPEGCTD 453

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  249 bits (635), Expect = 5e-66
 Identities = 115/144 (79%), Positives = 134/144 (93%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVC GIF++DNV+ E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 294 LIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVY 353

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA
Sbjct: 354 DDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 413

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           D Y+S+AALGDAN DAM TG+FYG
Sbjct: 414 DKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  248 bits (633), Expect = 8e-66
 Identities = 114/143 (79%), Positives = 134/143 (93%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V +E VV++VDTFPGQSIDFFGALRARVY
Sbjct: 290 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVY 349

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLA
Sbjct: 350 DDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLA 409

Query: 362 DTYMSQAALGDANQDAMKTGSFY 430
           D Y+++AALG+AN+DAMKTGSF+
Sbjct: 410 DKYLNEAALGEANEDAMKTGSFF 432

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  247 bits (631), Expect = 1e-65
 Identities = 118/142 (83%), Positives = 132/142 (92%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+V+KIVDTFPGQSIDFFGALRARVY
Sbjct: 298 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVY 357

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA
Sbjct: 358 DDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLA 417

Query: 362 DTYMSQAALGDANQDAMKTGSF 427
           +TY+ +AALGDAN DA+ TG+F
Sbjct: 418 ETYLKEAALGDANADAINTGNF 439

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  238 bits (606), Expect(2) = 2e-65
 Identities = 111/144 (77%), Positives = 129/144 (89%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVC GIF+TD V  E VVK+VD FPGQSIDFFGALRARVY
Sbjct: 292 LIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVY 351

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
            DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLA
Sbjct: 352 HDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLA 411

Query: 362 DTYMSQAALGDANQDAMKTGSFYG 433
           D YMS AALGDAN+DA+  G+F+G
Sbjct: 412 DQYMSSAALGDANKDAIDRGTFFG 435



 Score = 30.8 bits (68), Expect(2) = 2e-65
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 481 GKGAQQGTLPVPEGCTDQNA 540
           GK AQQ +LPV +GCTD  A
Sbjct: 435 GKAAQQVSLPVAQGCTDPEA 454

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  246 bits (627), Expect = 4e-65
 Identities = 117/140 (83%), Positives = 132/140 (94%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+VVKIVD+FPGQSIDFFGALRARVY
Sbjct: 293 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVY 352

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA
Sbjct: 353 DDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLA 412

Query: 362 DTYMSQAALGDANQDAMKTG 421
           +TY+ +AALGDAN DA+ TG
Sbjct: 413 ETYLKEAALGDANADAINTG 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  245 bits (626), Expect = 5e-65
 Identities = 113/142 (79%), Positives = 132/142 (92%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E +VK+VD FPGQSIDFFGALRARVY
Sbjct: 294 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVY 353

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLA
Sbjct: 354 DDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLA 413

Query: 362 DTYMSQAALGDANQDAMKTGSF 427
           D YMS+AALGDANQDA+K G+F
Sbjct: 414 DKYMSEAALGDANQDAIKRGTF 435

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  241 bits (616), Expect = 7e-64
 Identities = 116/143 (81%), Positives = 127/143 (88%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV  E VVKIVD FPGQSIDFFGALRARVY
Sbjct: 298 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 357

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA
Sbjct: 358 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 417

Query: 362 DTYMSQAALGDANQDAMKTGSFY 430
           D Y+ +AALGDAN DA+  GSF+
Sbjct: 418 DKYLKEAALGDANADAINNGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  237 bits (604), Expect = 2e-62
 Identities = 106/143 (74%), Positives = 132/143 (92%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTRDDR+GVCKGIF+TD V +E + K+VDTFPGQSIDFFGALRARVY
Sbjct: 296 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVY 355

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLA
Sbjct: 356 DDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLA 415

Query: 362 DTYMSQAALGDANQDAMKTGSFY 430
           D Y+++AALG+AN+DA+K+GSF+
Sbjct: 416 DKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  228 bits (582), Expect = 6e-60
 Identities = 103/143 (72%), Positives = 130/143 (90%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V ++ +V++VD  PGQSIDFFGALRARVY
Sbjct: 298 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVY 357

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLA
Sbjct: 358 DDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLA 417

Query: 362 DTYMSQAALGDANQDAMKTGSFY 430
           D Y+++AALG+AN+DA+K+GSF+
Sbjct: 418 DQYLNEAALGNANEDAIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  196 bits (498), Expect = 4e-50
 Identities = 90/119 (75%), Positives = 105/119 (88%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRM+KFYWAPTR+DRIG+C GIF+TD V  E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 291 LIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVY 350

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 358
           DDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 351 DDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  169 bits (429), Expect = 4e-42
 Identities = 83/129 (64%), Positives = 99/129 (76%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEK+YW PTR+DRIGVC GIFQ DNV    V  +VDTFPGQSIDFFGALRARVY
Sbjct: 267 LIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVY 326

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           DD VR+W+  TG++ IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLA
Sbjct: 327 DDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLA 385

Query: 362 DTYMSQAAL 388
           D Y+S A L
Sbjct: 386 DAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  138 bits (347), Expect = 1e-32
 Identities = 61/123 (49%), Positives = 86/123 (69%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYW P RD+++G+  GIF  D +S   V K+VD+FP QSIDFF ALR+R+Y
Sbjct: 167 LIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIY 226

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           D+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL 
Sbjct: 227 DEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLV 286

Query: 362 DTY 370
           D Y
Sbjct: 287 DEY 289

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  132 bits (333), Expect = 5e-31
 Identities = 60/123 (48%), Positives = 84/123 (68%)
 Frame = +2

Query: 2   LIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 181
           LIRDGRMEKFYW P RDD++G+  GIF  D +S   + ++VDTFP QSIDFF ALR+R+Y
Sbjct: 167 LIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIY 226

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 361
           D ++R ++   G E I  R+VNS + P  F++P  ++  L+E G++++ EQ  V   QL 
Sbjct: 227 DIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLV 286

Query: 362 DTY 370
           D Y
Sbjct: 287 DEY 289

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +2

Query: 119 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 298
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32

>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 868

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
 Frame = -2

Query: 430  VEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVXXXXXXXXXXXLEGHGPVP 251
            VEG+  HR L  + +   AHVG     +LDI  L DE   V            +  G   
Sbjct: 671  VEGS--HRFLRRVWRLAQAHVGQGASGSLDIAALTDEQKAVRRSIHQAIKQASQDIGQNQ 728

Query: 250  RVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRL--VTDIVGLE- 80
            + +  +A V        +  + V+  + Q+T +   L  EG++ +   L  +T  +  E 
Sbjct: 729  KFNTAVAQV--------MTLMNVLEKAPQATPQDRALLQEGLETVTLLLAPITPHISHEL 780

Query: 79   -DTLADTDTVVTGGSPVELLHTTITD 5
               L   + V+  G PV   H  + D
Sbjct: 781  WTQLGHNEPVIDAGWPVFDAHALVQD 806

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +2

Query: 263 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 418
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 419 GSFYG*KILHTHPPSLAA 472
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 202 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 77
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44

>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 116 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 295
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 296 KLLEYGHMLVQEQDNVKRV 352
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 263 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 418
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 419 GSFYG*KILHTHPPSLAA 472
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 366 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 262
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 200 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 307
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3|
          Length = 209

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 92  NVSDESVVKIVDTFP-GQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 268
           NV DE  +K VDTF  G  +D  G  + + +   +++W  S G  + G +   +      
Sbjct: 92  NVGDE--IK-VDTFEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMGA 148

Query: 269 FEQPKMTVEKLLEYGHM 319
              P  T +     GHM
Sbjct: 149 ASDPSRTFKNKRMPGHM 165

>LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA|
          Length = 616

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = -2

Query: 238 PLANVLDSGRADP------LAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDI---VG 86
           P+ N +D   ADP      LA LI   P      +V+G +  GVDDL DR+V +I   VG
Sbjct: 142 PVLNKIDLPAADPDKYAAELAGLIGGKPG--DVLRVSGKTGVGVDDLLDRVVQEIPAPVG 199

Query: 85  LEDTLA 68
             D  A
Sbjct: 200 AADAPA 205

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +2

Query: 263 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 418
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 419 GSFYG*KILHTHPPSLAA 472
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 104 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFE 274
           + +V  V+T    S D   A+ ARV  D+++ ++GS  +E   ++ V+  +G + ++
Sbjct: 224 DRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYD 280

>GIDA_LACPL (Q88RX6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 636

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -2

Query: 271 EGHGP--VPRVHQPLANVLDSGRADPLAHLIVVHPSTQSTEK--VNGLSWEGVDDLDDRL 104
           EG GP   P +   +    D  R     H + + P  ++T++  V GLS    +++  R+
Sbjct: 278 EGVGPRYCPSIEDKIVRFADKKR-----HQLFLEPEGRNTDEWYVQGLSTSMPEEVQQRI 332

Query: 103 VTDIVGLED 77
           +  I GLED
Sbjct: 333 LHSIKGLED 341

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 263 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 418
           VTF    +T E K +E  H  + E         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 419 GSFYG*KILHTHPPSLAA 472
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)|
          Length = 716

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 182 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPK 283
           D+E  +  G+ G+E +  + +  RDG VT+E  K
Sbjct: 186 DEETNEISGAMGLEKVLDKYLKERDGYVTYESDK 219

>VID27_YEAST (P40157) Vacuolar import and degradation protein VID27|
          Length = 782

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 44  TRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSID 151
           TRD+RIGV K   + D++   + +K +    G+SID
Sbjct: 435 TRDNRIGVFKTDDEDDSLEFVAAIKNISNLGGKSID 470

>GIDA_BORBU (P53362) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 621

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 268 GHGP--VPRVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKV--NGLSWEGVDDLDDRLV 101
           G+GP   P +   +    D  R     H I + P   +TE++  NGLS    +++  +L+
Sbjct: 268 GNGPRYCPSIEDKIVKFKDKDR-----HQIFIEPEGFNTEEMYLNGLSSSLPENIQQKLI 322

Query: 100 TDIVGLE 80
             I GLE
Sbjct: 323 NSIEGLE 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,085,115
Number of Sequences: 219361
Number of extensions: 1504071
Number of successful extensions: 5091
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 4912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5088
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)