Clone Name	baal8o20
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1029	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	890	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	890	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	841	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	710	0.0
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	664	0.0
7	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	579	e-162
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
9	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	190	3e-45
10	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	190	3e-45
11	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	190	3e-45
12	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
13	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
14	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
15	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
16	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
17	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	190	3e-45
18	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	190	3e-45
19	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	170	3e-39
20	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	149	1e-32
21	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	149	1e-32
22	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
23	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	149	1e-32
24	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	141	3e-30
25	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	131	3e-27
26	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
27	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	123	6e-25
28	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	123	6e-25
29	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	123	6e-25
30	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	123	6e-25
31	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	123	6e-25
32	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	123	6e-25
33	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	123	6e-25
34	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	123	6e-25
35	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	123	6e-25
36	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	123	6e-25
37	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	123	6e-25
38	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	123	6e-25
39	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	123	6e-25
40	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	123	6e-25
41	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	123	6e-25
42	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	113	6e-22
43	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	113	6e-22
44	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	98	4e-17
45	gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bi...	98	4e-17
46	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	96	1e-16
47	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	1e-16
48	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	1e-16
49	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	90	9e-15
50	gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence	86	1e-13
51	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	86	1e-13
52	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	86	1e-13
53	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	80	9e-12
54	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	9e-12
55	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	78	3e-11
56	gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 gen...	78	3e-11
57	gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 gen...	78	3e-11
58	gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 gen...	78	3e-11
59	gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 gen...	78	3e-11
60	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	78	3e-11
61	gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 gen...	78	3e-11
62	gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 gen...	78	3e-11
63	gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 gen...	78	3e-11
64	gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 gen...	78	3e-11
65	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	78	3e-11
66	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	78	3e-11
67	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	76	1e-10
68	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	74	5e-10
69	gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 gen...	72	2e-09
70	gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 gen...	72	2e-09
71	gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 gen...	72	2e-09
72	gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 gen...	72	2e-09
73	gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 gen...	72	2e-09
74	gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genom...	72	2e-09
75	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	70	8e-09
76	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	70	8e-09
77	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	70	8e-09
78	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	70	8e-09
79	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	3e-08
80	emb|Y10657.1|CLRCAGENE C.littorale rca gene	66	1e-07
81	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	62	2e-06
82	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	62	2e-06
83	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	8e-06
84	gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate...	60	8e-06
85	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	8e-06
86	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	56	1e-04
87	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	54	5e-04
88	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
89	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	50	0.008
90	gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s...	46	0.12
91	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	46	0.12
92	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	46	0.12
93	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	46	0.12
94	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.47
95	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	1.9
96	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	1.9
97	ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G7...	40	7.3
98	gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet...	40	7.3
99	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	7.3
100	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	7.3
101	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	7.3
102	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	7.3
103	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	7.3
104	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	7.3
105	gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete se...	40	7.3
106	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	40	7.3
107	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	7.3
108	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	7.3
109	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	7.3
110	gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, com...	40	7.3
111	gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, com...	40	7.3
112	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	7.3
113	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	7.3
114	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	7.3
115	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	7.3
116	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	40	7.3
117	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	7.3
118	emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Co...	40	7.3
119	emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Co...	40	7.3
120	emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Co...	40	7.3
121	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	7.3
122	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	7.3
123	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	7.3
124	dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown ...	40	7.3
125	gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N...	40	7.3

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1029 bits (519), Expect = 0.0
 Identities = 539/543 (99%), Gaps = 2/543 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 1050

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1051 ggtgtctgcaagggtatcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatc 1110

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 1170

                                                                        
Query: 182  gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 1230

                                                                        
Query: 242  gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 1290

                                                                        
Query: 302  ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 1350

                                                                        
Query: 362  gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 1410

                                                                        
Query: 422  tccttctacggttagaaaattctccatac-acacccaccatctcttgctgcataggagga 480
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1411 tccttctacggttagaaaattctccatacaacacccaccatctcttgctgcataggagga 1470

                                                                        
Query: 481  ggtaaaggagcacagcaaggtactttgcccg-tgccggaaggttgcaccgaccaaaatgc 539
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1471 ggtaaaggagcacagcaaggtactttgcccgatgccggaaggttgcaccgaccaaaatgc 1530

               
Query: 540  caa 542
            |||
Sbjct: 1531 caa 1533

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  890 bits (449), Expect = 0.0
 Identities = 518/541 (95%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61  ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgcgacgaccgtatc 120

                                                                       
Query: 62  ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 121 ggtgtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatc 180

                                                                       
Query: 122 gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 gtcgacaccttcccaggacaatccatcgactttttcggtgctctgcgtgctcgggtgtac 240

                                                                       
Query: 182 gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 241
           ||||| |||||||||||||||||   ||||||||| ||||||||||||||||||| ||||
Sbjct: 241 gacgacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggcaagaagctg 300

                                                                       
Query: 242 gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 301
           ||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct: 301 gtgaactcgcgggacggaccagtgacctttgagcagccaaagatgacagtggagaagctg 360

                                                                       
Query: 302 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 420

                                                                       
Query: 362 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 480

                                                                       
Query: 422 tccttctacggttagaaaattctccatacacacccaccatctcttgctgcataggaggag 481
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 accttctacggttagaacattctccatacacacccaccatctcttgctgcataggaggag 540

                                                                       
Query: 482 gtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcca 541
           ||||||| |||||||||||||||||||| || |||| ||| ||||||||||| | |||||
Sbjct: 541 gtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgaccagactgcca 600

            
Query: 542 a 542
           |
Sbjct: 601 a 601

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  890 bits (449), Expect = 0.0
 Identities = 518/541 (95%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 911  ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgcgacgaccgtatc 970

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 971  ggtgtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatc 1030

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1031 gtcgacaccttcccaggacaatccatcgactttttcggtgctctgcgtgctcgggtgtac 1090

                                                                        
Query: 182  gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 241
            ||||| |||||||||||||||||   ||||||||| ||||||||||||||||||| ||||
Sbjct: 1091 gacgacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggcaagaagctg 1150

                                                                        
Query: 242  gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 301
            ||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct: 1151 gtgaactcgcgggacggaccagtgacctttgagcagccaaagatgacagtggagaagctg 1210

                                                                        
Query: 302  ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 1270

                                                                        
Query: 362  gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 1330

                                                                        
Query: 422  tccttctacggttagaaaattctccatacacacccaccatctcttgctgcataggaggag 481
             |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 accttctacggttagaacattctccatacacacccaccatctcttgctgcataggaggag 1390

                                                                        
Query: 482  gtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcca 541
            ||||||| |||||||||||||||||||| || |||| ||| ||||||||||| | |||||
Sbjct: 1391 gtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgaccagactgcca 1450

             
Query: 542  a 542
            |
Sbjct: 1451 a 1451

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  841 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 795

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 796  ggtgtctgcaagggtatcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatc 855

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 915

                                                                        
Query: 182  gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 975

                                                                        
Query: 242  gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 1035

                                                                        
Query: 302  ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 1095

                                                                        
Query: 362  gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 1155

                        
Query: 422  tccttctacggt 433
            ||||||||||||
Sbjct: 1156 tccttctacggt 1167



 Score =  123 bits (62), Expect = 6e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                        
Query: 481  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224

              
Query: 541  aa 542
            ||
Sbjct: 1225 aa 1226

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  710 bits (358), Expect = 0.0
 Identities = 486/528 (92%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||| 
Sbjct: 925  atccgtgacggtcgtatggagaagttctactgggcgcccacccgcgaggaccgtatcggc 984

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 985  gtctgcaagggtatcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcgtc 1044

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1045 gacacnttcccaggacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacgac 1104

                                                                        
Query: 185  gatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctggtg 244
            | ||||||||||||||||||    || |||||||| |||||||| |||||||||||||||
Sbjct: 1105 gttgaggtgcgcaagtgggtgtcgtccaccggaattgagaacatcggcaagaggctggtg 1164

                                                                        
Query: 245  aactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgcta 304
            |||||||||||||| ||||| |||||||||||||| |||||||| || |||||| |||| 
Sbjct: 1165 aactcgcgggacggacccgtcaccttcgagcagcccaagatgacggtggagaagttgctg 1224

                                                                        
Query: 305  gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 364
            |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1225 gagtacggccacatgcttgtccaggagcaggacaatgtcaagcgtgtgcagcttgcggac 1284

                                                                        
Query: 365  acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 424
            || ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 1285 acttacatgagccaggcagctctgggtgatgcgaacaaggatgccatgaagactggttcc 1344

                                                                        
Query: 425  ttctacggttagaaaattctccatacacacccaccatctcttgctgcataggaggaggta 484
            |||||||||||||| | ||| |||  ||||||||||||||||||||||||||||||||||
Sbjct: 1345 ttctacggttagaacactcttcat--acacccaccatctcttgctgcataggaggaggta 1402

                                                            
Query: 485  aaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgacc 532
            |||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct: 1403 aaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgacc 1450

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                        
Query: 149  gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 7080

                                                                        
Query: 209  tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7081 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 7140

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7141 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 7200

                                                                        
Query: 329  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7201 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 7260

                                                                        
Query: 389  ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7261 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 7320

                                               
Query: 449  acacacccaccatctcttgctgcataggaggaggt 483
            |||||||||||||||||||||||||||||||||||
Sbjct: 7321 acacacccaccatctcttgctgcataggaggaggt 7355



 Score =  293 bits (148), Expect = 3e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 6792

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6793 ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 6852

                                        
Query: 122  gtcgacaccttcccaggacaatccattg 149
            ||||||||||||||||||||||||||||
Sbjct: 6853 gtcgacaccttcccaggacaatccattg 6880



 Score =  141 bits (71), Expect = 3e-30
 Identities = 173/207 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||| || || |||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 3606 ctgatccgtgacgggcgcatggagaagttctactgggcgcccacccgcgaggaccgcatc 3665

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            || || |||||||| |||||||  |||||||| |||   |||||| | || || | | | 
Sbjct: 3666 ggcgtgtgcaagggcatcttccgcaccgacaacgtcccggacgaggccgtggtgaggctg 3725

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            || ||||||||||| || || ||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 3726 gtggacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtac 3785

                                       
Query: 182  gacgatgaggtgcgcaagtgggtcggc 208
            ||||| |||||||||||||||||||||
Sbjct: 3786 gacgacgaggtgcgcaagtgggtcggc 3812



 Score =  127 bits (64), Expect = 4e-26
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                        
Query: 479  gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582

                
Query: 539  ccaa 542
            ||||
Sbjct: 7583 ccaa 7586



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 3873 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 3932

                                         
Query: 329  gagcaggacaatgtcaagcgtgtgcagct 357
            |||||||| || |||||||||||||||||
Sbjct: 3933 gagcaggagaacgtcaagcgtgtgcagct 3961

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  579 bits (292), Expect = e-162
 Identities = 388/420 (92%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaag 73
            ||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||||
Sbjct: 944  ggtcgtatggagaagttttactgggcgcccacccgcgaggaccgtatcggcgtctgcaag 1003

                                                                        
Query: 74   ggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttc 133
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1004 ggtatcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcgtcgacaccttc 1063

                                                                        
Query: 134  ccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtg 193
            |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1064 ccaggacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacgacgacgaggtg 1123

                                                                        
Query: 194  cgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgg 253
            |||||||||||    || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1124 cgcaagtgggtgtcgtccaccggaattgagaacatcggcaagaggctggtgaactcgcgg 1183

                                                                        
Query: 254  gacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacggg 313
            ||||| ||||| |||||||||||||| |||||||| || |||||| |||| |||||||| 
Sbjct: 1184 gacggacccgtcaccttcgagcagcccaagatgacggtggagaagttgctggagtacggc 1243

                                                                        
Query: 314  cacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatg 373
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1244 cacatgcttgtccaggagcaggacaatgtcaagcgtgtgcagcttgcggacacttacatg 1303

                                                                        
Query: 374  agccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 433
            ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 1304 agccaggcagctctgggtgatgcgaacaaggatgccatgaagactggttccttctacggt 1363



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                
Query: 481  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgacc 532
            |||||||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgacc 1412

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Plus

                                                                       
Query: 149 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 208
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |
Sbjct: 2   gactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtgacc 61

                                                                       
Query: 209 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 268
           |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || ||||||
Sbjct: 62  tctaccggtatcgagaacattggcaagaagcttgtgaactcgcgggacggaccagtgacc 121

                                                                       
Query: 269 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 181

                                                                       
Query: 329 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 241

                                                                       
Query: 389 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 448
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 242 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaacattctccat 301

                  
Query: 449 acacacc 455
           |||||||
Sbjct: 302 acacacc 308

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 887  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 946

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 947  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1006

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1007 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1066

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1067 gacgaggtgcgcaagtgggt 1086



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1103 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1162

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1163 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 1222

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1223 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1282

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1283 tccgacgccatgaagactggttccttctacggtt 1316



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 506  tgcccgtgccggaaggttgcaccgacc 532
            |||| ||||||||||||||||||||||
Sbjct: 1426 tgcctgtgccggaaggttgcaccgacc 1452

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 882  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 941

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 942  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1001

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1002 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1061

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1062 gacgaggtgcgcaagtgggt 1081



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1098 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1157

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1158 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1217

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1218 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1277

                                            
Query: 401  caggatgcgatgaagactggttccttctacgg 432
               || || |||||||||||||||||||||||
Sbjct: 1278 tccgacgccatgaagactggttccttctacgg 1309



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 506  tgcccgtgccggaaggttgcaccgacc 532
            |||| ||||||||||||||||||||||
Sbjct: 1336 tgcctgtgccggaaggttgcaccgacc 1362

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 136 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 195

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 196 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 255

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 256 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 315

                               
Query: 185 gatgaggtgcgcaagtgggt 204
           || |||||||||||||||||
Sbjct: 316 gacgaggtgcgcaagtgggt 335



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                       
Query: 221 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
           |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 352 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 411

                                                                       
Query: 281 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
           ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 412 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 471

                                                                       
Query: 341 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
           ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 472 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 531

                                             
Query: 401 caggatgcgatgaagactggttccttctacggtt 434
              || || |||||||||||||||||||||||||
Sbjct: 532 tccgacgccatgaagactggttccttctacggtt 565

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 930  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 989

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 990  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1049

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1050 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1109

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1110 gacgaggtgcgcaagtgggt 1129



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1146 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1205

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1206 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1265

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1266 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1325

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1326 tccgacgccatgaagactggttccttctacggtt 1359



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493

              
Query: 531  cc 532
            ||
Sbjct: 1494 cc 1495

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 881  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 940

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 941  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1000

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1001 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1060

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1061 gacgaggtgcgcaagtgggt 1080



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1097 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1156

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1157 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1216

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1217 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1276

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1277 tccgacgccatgaagactggttccttctacggtt 1310



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444

              
Query: 531  cc 532
            ||
Sbjct: 1445 cc 1446

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 919  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 978

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 979  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1038

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1039 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1098

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1099 gacgaggtgcgcaagtgggt 1118



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1135 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1194

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1195 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1254

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1255 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1314

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1315 tccgacgccatgaagactggttccttctacggtt 1348



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482

              
Query: 531  cc 532
            ||
Sbjct: 1483 cc 1484

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 918  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 977

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 978  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1037

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1038 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1097

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1098 gacgaggtgcgcaagtgggt 1117



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1134 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1193

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1194 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1253

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1254 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1313

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1314 tccgacgccatgaagactggttccttctacggtt 1347



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481

              
Query: 531  cc 532
            ||
Sbjct: 1482 cc 1483

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 702 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 761

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 762 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 821

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 822 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 881

                               
Query: 185 gatgaggtgcgcaagtgggt 204
           || |||||||||||||||||
Sbjct: 882 gacgaggtgcgcaagtgggt 901



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 918  gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 977

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 978  aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1037

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1038 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1097

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1098 tccgacgccatgaagactggttccttctacggtt 1131



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265

              
Query: 531  cc 532
            ||
Sbjct: 1266 cc 1267

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 923  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 982

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 983  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1042

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1043 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1102

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1103 gacgaggtgcgcaagtgggt 1122



 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1139 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1198

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1199 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1258

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1259 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1318

                                              
Query: 401  caggatgcgatgaagactggttccttctacggtt 434
               || || |||||||||||||||||||||||||
Sbjct: 1319 tccgacgccatgaagactggttccttctacggtt 1352



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                        
Query: 474  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 530
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486

              
Query: 531  cc 532
            ||
Sbjct: 1487 cc 1488

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 917  atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 976

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 977  gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 1036

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||||
Sbjct: 1037 gacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgac 1096

                                
Query: 185  gatgaggtgcgcaagtgggt 204
            || |||||||||||||||||
Sbjct: 1097 gacgaggtgcgcaagtgggt 1116



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 221  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1133 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1192

                                                                        
Query: 281  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1193 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1252

                                                                        
Query: 341  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1253 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1312

                                            
Query: 401  caggatgcgatgaagactggttccttctacgg 432
               || || |||||||||||||||||||||||
Sbjct: 1313 tccgacgccatgaagactggttccttctacgg 1344



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 506  tgcccgtgccggaaggttgcaccgacc 532
            |||| ||||||||||||||||||||||
Sbjct: 1371 tgcctgtgccggaaggttgcaccgacc 1397

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  170 bits (86), Expect = 3e-39
 Identities = 275/338 (81%)
 Strand = Plus / Plus

                                                                        
Query: 20   atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
            |||||||||||||||||||| |||||||| || ||||| ||||| || |||||||| |||
Sbjct: 905  atggagaagttctactgggcgcccacccgggaggaccgcatcggcgtgtgcaagggcatc 964

                                                                        
Query: 80   ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 139
            ||||  |||||||| |||   |||||| | || || | | | || ||||||||||| || 
Sbjct: 965  ttccgcaccgacaacgtccccgacgaggccgtggtgaggctggtggacaccttcccgggg 1024

                                                                        
Query: 140  caatccattgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaag 199
            || ||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||||
Sbjct: 1025 cagtccatcgacttcttcggcgcgctgcgggcgcgggtgtacgacgacgaggtgcgcaag 1084

                                                                        
Query: 200  tgggtcggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacggg 259
            |||||||||   | |||  ||||||||||   |||| |||| || |||||  |||| |||
Sbjct: 1085 tgggtcggcgagatcggcgtcgagaacatctccaagcggctcgtcaactccagggagggg 1144

                                                                        
Query: 260  cccgtgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatg 319
            ||   ||| ||||| ||||| ||||||||  ||||||||||  | |||||||| ||||||
Sbjct: 1145 ccgccgacgttcgaccagcccaagatgaccatcgagaagctcatggagtacggccacatg 1204

                                                  
Query: 320  ctcgtccaggagcaggacaatgtcaagcgtgtgcagct 357
            || |||||||||||||| || || ||||| ||||||||
Sbjct: 1205 ctggtccaggagcaggagaacgtgaagcgcgtgcagct 1242

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                          
Query: 5      atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
              |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 108830 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 108771

                                                                          
Query: 65     gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
              |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 108770 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 108711

                                     
Query: 125    gacaccttcccaggacaatccat 147
              |||| ||||||||| ||||||||
Sbjct: 108710 gacagcttcccaggccaatccat 108688



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                          
Query: 221    gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
              |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 108522 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 108463

                                                                          
Query: 281    aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
              ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 108462 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 108403

                                                                          
Query: 341    gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
              ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 108402 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 108343

                                                   
Query: 401    caggatgcgatgaagactggttccttctacggttaga 437
                 || || ||||||||||||||||||||||||||||
Sbjct: 108342 tccgacgccatgaagactggttccttctacggttaga 108306



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 20     atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
              ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 112519 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 112460

                  
Query: 80     ttcc 83
              ||||
Sbjct: 112459 ttcc 112456



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 155    ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 204
              ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 108588 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 108539



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 506    tgcccgtgccggaaggttgcaccgacc 532
              |||| ||||||||||||||||||||||
Sbjct: 107252 tgcctgtgccggaaggttgcaccgacc 107226



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 221    gagaacattggcaagaggctggtgaactc 249
              |||||||| |||| |||||||||||||||
Sbjct: 112352 gagaacatcggcaggaggctggtgaactc 112324

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                         
Query: 5     atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
             |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 30707 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 30648

                                                                         
Query: 65    gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
             |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 30647 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 30588

                                    
Query: 125   gacaccttcccaggacaatccat 147
             |||| ||||||||| ||||||||
Sbjct: 30587 gacagcttcccaggccaatccat 30565



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                         
Query: 221   gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
             |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 30399 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 30340

                                                                         
Query: 281   aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
             ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 30339 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 30280

                                                                         
Query: 341   gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
             ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 30279 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 30220

                                                  
Query: 401   caggatgcgatgaagactggttccttctacggttaga 437
                || || ||||||||||||||||||||||||||||
Sbjct: 30219 tccgacgccatgaagactggttccttctacggttaga 30183



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 20    atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
             ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 34396 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 34337

                 
Query: 80    ttcc 83
             ||||
Sbjct: 34336 ttcc 34333



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 155   ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 204
             ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 30465 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 30416



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 506   tgcccgtgccggaaggttgcaccgacc 532
             |||| ||||||||||||||||||||||
Sbjct: 29133 tgcctgtgccggaaggttgcaccgacc 29107



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 221   gagaacattggcaagaggctggtgaactc 249
             |||||||| |||| |||||||||||||||
Sbjct: 34229 gagaacatcggcaggaggctggtgaactc 34201

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                            
Query: 5        atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
                |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 28303969 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 28303910

                                                                            
Query: 65       gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
                |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 28303909 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 28303850

                                       
Query: 125      gacaccttcccaggacaatccat 147
                |||| ||||||||| ||||||||
Sbjct: 28303849 gacagcttcccaggccaatccat 28303827



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 221      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28303661 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28303602

                                                                            
Query: 281      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28303601 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28303542

                                                                            
Query: 341      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28303541 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28303482

                                                     
Query: 401      caggatgcgatgaagactggttccttctacggttaga 437
                   || || ||||||||||||||||||||||||||||
Sbjct: 28303481 tccgacgccatgaagactggttccttctacggttaga 28303445



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 20       atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
                ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 28307658 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28307599

                    
Query: 80       ttcc 83
                ||||
Sbjct: 28307598 ttcc 28307595



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 155      ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 204
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28303727 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28303678



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 506      tgcccgtgccggaaggttgcaccgacc 532
                |||| ||||||||||||||||||||||
Sbjct: 28302395 tgcctgtgccggaaggttgcaccgacc 28302369



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 221      gagaacattggcaagaggctggtgaactc 249
                |||||||| |||| |||||||||||||||
Sbjct: 28307491 gagaacatcggcaggaggctggtgaactc 28307463

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                            
Query: 5        atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
                |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 28286418 atccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcggc 28286359

                                                                            
Query: 65       gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
                |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||||
Sbjct: 28286358 gtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtc 28286299

                                       
Query: 125      gacaccttcccaggacaatccat 147
                |||| ||||||||| ||||||||
Sbjct: 28286298 gacagcttcccaggccaatccat 28286276



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 221      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 280
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28286110 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28286051

                                                                            
Query: 281      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 340
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28286050 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28285991

                                                                            
Query: 341      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 400
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28285990 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28285931

                                                     
Query: 401      caggatgcgatgaagactggttccttctacggttaga 437
                   || || ||||||||||||||||||||||||||||
Sbjct: 28285930 tccgacgccatgaagactggttccttctacggttaga 28285894



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 20       atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
                ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 28290107 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28290048

                    
Query: 80       ttcc 83
                ||||
Sbjct: 28290047 ttcc 28290044



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 155      ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 204
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28286176 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28286127



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 506      tgcccgtgccggaaggttgcaccgacc 532
                |||| ||||||||||||||||||||||
Sbjct: 28284844 tgcctgtgccggaaggttgcaccgacc 28284818



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 221      gagaacattggcaagaggctggtgaactc 249
                |||||||| |||| |||||||||||||||
Sbjct: 28289940 gagaacatcggcaggaggctggtgaactc 28289912

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  141 bits (71), Expect = 3e-30
 Identities = 173/207 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 61
            ||||||||||| || || |||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 1037 ctgatccgtgacgggcgcatggagaagttctactgggcgcccacccgcgaggaccgcatc 1096

                                                                        
Query: 62   ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 121
            || || |||||||| |||||||  |||||||| |||   |||||| | || || | | | 
Sbjct: 1097 ggcgtgtgcaagggcatcttccgcaccgacaacgtcccggacgaggccgtggtgaggctg 1156

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            || ||||||||||| || || ||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 1157 gtggacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtac 1216

                                       
Query: 182  gacgatgaggtgcgcaagtgggtcggc 208
            ||||| |||||||||||||||||||||
Sbjct: 1217 gacgacgaggtgcgcaagtgggtcggc 1243



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 1304 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 1363

                                         
Query: 329  gagcaggacaatgtcaagcgtgtgcagct 357
            |||||||| || |||||||||||||||||
Sbjct: 1364 gagcaggagaacgtcaagcgtgtgcagct 1392

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score =  131 bits (66), Expect = 3e-27
 Identities = 135/158 (85%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1007 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgaggaccgtatcggt 1066

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            ||   ||  |||||||||  ||||||||||||   ||| ||    || |||||| |||||
Sbjct: 1067 gttgccaccggtatcttcaggaccgacaatgttcctgaggaccacgttgtcaagctcgtc 1126

                                                  
Query: 125  gacaccttcccaggacaatccattgactttttcggtgc 162
            ||||||||||| || ||||| ||||| || ||||||||
Sbjct: 1127 gacaccttccctggccaatctattgatttcttcggtgc 1164

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Plus

                                                                        
Query: 230  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 289
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 801  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 860

                                                                        
Query: 290  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 349
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 861  ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 920

                                                                        
Query: 350  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 409
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 921  gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 980

                                       
Query: 410  atgaagactggttccttctacggttag 436
            || |||||||| |||||||| ||||||
Sbjct: 981  atcaagactggatccttctatggttag 1007



 Score =  123 bits (62), Expect = 6e-25
 Identities = 164/198 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 576 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 635

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 636 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 695

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 696 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 755

                             
Query: 185 gatgaggtgcgcaagtgg 202
           || |||||| | ||||||
Sbjct: 756 gacgaggtgaggaagtgg 773

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1057 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1116

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1117 gtctgcaagggtatcttc 1134

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1057 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1116

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1117 gtctgcaagggtatcttc 1134

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1086 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1145

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1146 gtctgcaagggtatcttc 1163

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
            (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 968  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1027

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1028 gtctgcaagggtatcttc 1045

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 883 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 942

                             
Query: 65  gtctgcaagggtatcttc 82
           ||||||||||||||||||
Sbjct: 943 gtctgcaagggtatcttc 960

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Minus

                                                                         
Query: 5     atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
             ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 14231 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 14172

                               
Query: 65    gtctgcaagggtatcttc 82
             ||||||||||||||||||
Sbjct: 14171 gtctgcaagggtatcttc 14154

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 971  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1030

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1031 gtctgcaagggtatcttc 1048

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 960  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1019

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1020 gtctgcaagggtatcttc 1037

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 968  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1027

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1028 gtctgcaagggtatcttc 1045

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds
          Length = 1674

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 971  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1030

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1031 gtctgcaagggtatcttc 1048

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  123 bits (62), Expect = 6e-25
 Identities = 164/198 (82%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 877  atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 936

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 937  gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 996

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 997  gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 1056

                              
Query: 185  gatgaggtgcgcaagtgg 202
            || |||||| | ||||||
Sbjct: 1057 gacgaggtgaggaagtgg 1074



 Score =  103 bits (52), Expect = 6e-19
 Identities = 166/204 (81%)
 Strand = Plus / Plus

                                                                        
Query: 233  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 292
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 1105 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1164

                                                                        
Query: 293  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 352
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1165 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1224

                                                                        
Query: 353  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 412
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1225 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1284

                                    
Query: 413  aagactggttccttctacggttag 436
            |||||||| |||||||| ||||||
Sbjct: 1285 aagactggatccttctatggttag 1308

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  123 bits (62), Expect = 6e-25
 Identities = 164/198 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 740 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 799

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 800 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 859

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 860 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 919

                             
Query: 185 gatgaggtgcgcaagtgg 202
           || |||||| | ||||||
Sbjct: 920 gacgaggtgaggaagtgg 937



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Plus

                                                                        
Query: 233  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 292
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 968  aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1027

                                                                        
Query: 293  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 352
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1028 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1087

                                                                        
Query: 353  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 412
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1088 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1147

                             
Query: 413  aagactggttccttcta 429
            |||||||| ||||||||
Sbjct: 1148 aagactggatccttcta 1164

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  123 bits (62), Expect = 6e-25
 Identities = 164/198 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 770 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 829

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 830 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 889

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 890 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 949

                             
Query: 185 gatgaggtgcgcaagtgg 202
           || |||||| | ||||||
Sbjct: 950 gacgaggtgaggaagtgg 967



 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Plus

                                                                        
Query: 230  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 289
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 995  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 1054

                                                                        
Query: 290  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 349
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 1055 ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 1114

                                                                        
Query: 350  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 409
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 1115 gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 1174

                                
Query: 410  atgaagactggttccttcta 429
            || |||||||| ||||||||
Sbjct: 1175 atcaagactggatccttcta 1194

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1086 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1145

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 1146 gtctgcaagggtatcttc 1163

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score =  123 bits (62), Expect = 6e-25
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 3052 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 3111

                              
Query: 65   gtctgcaagggtatcttc 82
            ||||||||||||||||||
Sbjct: 3112 gtctgcaagggtatcttc 3129

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score =  113 bits (57), Expect = 6e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 2749 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgaggaccgtattggt 2808

                 
Query: 65   gtctg 69
            |||||
Sbjct: 2809 gtctg 2813

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score =  113 bits (57), Expect = 6e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1121 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgaggaccgtattggt 1180

                 
Query: 65   gtctg 69
            |||||
Sbjct: 1181 gtctg 1185



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                        
Query: 120  tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 179
            |||| ||| ||||||| |||||||| || ||||||||||| ||  || | ||||| || |
Sbjct: 1236 tcgttgacgccttccctggacaatctatcgactttttcggagcgttgagggctcgtgtat 1295

                      
Query: 180  acgacgatga 189
            ||||||||||
Sbjct: 1296 acgacgatga 1305

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 142/173 (82%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||
Sbjct: 511 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 570

                                                                       
Query: 80  ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 139
           ||||  ||||||   |||   || |||   |||||| || | |||||||||||||| || 
Sbjct: 571 ttccgcaccgacggcgtcgacgaggagcacgtcgtccagctggtcgacaccttccctggc 630

                                                                
Query: 140 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggt 192
           || ||||| ||||| ||||| || |||||||| ||||| |||||||| |||||
Sbjct: 631 cagtccatcgacttcttcggcgcgctgcgtgcccgggtctacgacgacgaggt 683



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                       
Query: 269 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
           ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 760 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 819

                                                                       
Query: 329 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
           |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 820 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 879

                                                   
Query: 389 ggtgatgctaaccaggatgcgatgaagactggttccttct 428
           ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 880 ggtgaagccaacgaggacgccatgaagactggctccttct 919

---

>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase
           activase (Rca) gene, partial sequence
          Length = 648

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           ||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct: 156 atccgtgatggtcgtatggagaaattctactgggcacccactcgtgaggaccgtattggt 215

                                            
Query: 65  gtctgcaagggtatcttccagaccgacaatgtc 97
           || ||||  |||||||||  ||| |||||||||
Sbjct: 216 gtttgcactggtatcttcaggactgacaatgtc 248

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||||||||||||||| || |||||||||||||| ||| | || |||||||| |||
Sbjct: 952  atccgtgatggtcgtatggaaaaattctactgggctcctaccagggaagaccgtattggt 1011

                                            
Query: 65   gtctgcaagggtatcttccagaccgacaatgt 96
            |||||||||||||| |||  ||| ||||||||
Sbjct: 1012 gtctgcaagggtattttcaggactgacaatgt 1043



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 359  gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 408
            |||||||  ||||||||  |||| || || ||||||||||||||||||||
Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 329  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 389  ggtgatgctaaccaggatgcgatgaagactggttccttct 428
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 141/173 (81%)
 Strand = Plus / Plus

                                                                        
Query: 20   atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
            |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||
Sbjct: 906  atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 965

                                                                        
Query: 80   ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 139
            ||||  ||||||   |||   || |||   |||||| || | |||||||||||||| || 
Sbjct: 966  ttccgcaccgacggcgtcgacgaggagcacgtcgtccagctggtcgacaccttccctggc 1025

                                                                 
Query: 140  caatccattgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggt 192
            || ||||| || || ||||| || |||||||| ||||| |||||||| |||||
Sbjct: 1026 cagtccatcgatttcttcggcgcgctgcgtgcccgggtctacgacgacgaggt 1078

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 329  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 389  ggtgatgctaaccaggatgcgatgaagactggttccttct 428
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||
Sbjct: 906 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 965

               
Query: 80  ttcc 83
           ||||
Sbjct: 966 ttcc 969

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 153/189 (80%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           ||||||||||||||||||||||||||||| ||||| || ||  | || ||  | || |||
Sbjct: 274 atccgtgatggtcgtatggagaagttctattgggcaccaactagggaagatagaattggt 333

                                                                       
Query: 65  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
           || ||||||||||| |||  ||||||||| ||   ||| ||  |||| || ||||| |||
Sbjct: 334 gtttgcaagggtattttcaggaccgacaacgtgcctgaggaagctgttgtaaagattgtc 393

                                                                       
Query: 125 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
           || |||||||| |||||||| |||||||| || ||||||||| | || || || ||||| 
Sbjct: 394 gataccttccctggacaatctattgacttctttggtgctctgagggcacgagtatacgat 453

                    
Query: 185 gatgaggtg 193
           |||||||||
Sbjct: 454 gatgaggtg 462

---

>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence
          Length = 253

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           ||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct: 77  atccgtgatggtcgtatggagaaattctactgggcaccaacccgcgacgatcgtattggt 136

                  
Query: 65  gtctgca 71
           |||||||
Sbjct: 137 gtctgca 143

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 452 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 511

                                                                       
Query: 80  ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 139
           ||||  ||||||   |||   ||||||   |||||| || |||||||| ||||||| || 
Sbjct: 512 ttccgcaccgacggcgtccccgacgagcacgtcgtccagctcgtcgacgccttcccgggc 571

                                                          
Query: 140 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacga 186
           || ||||| ||||| ||||| || || || || ||||||||||||||
Sbjct: 572 cagtccatcgacttcttcggcgccctccgcgcccgggtgtacgacga 618

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| ||||||||||||||||||||||||||||||||||| || || ||||| || 
Sbjct: 968  atccgtgacggtcgtatggagaagttctactgggctcccacccgcgaagatcgtattgga 1027

                   
Query: 65   gtctgca 71
            |||||||
Sbjct: 1028 gtctgca 1034



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Plus

                                                                        
Query: 269  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 328
            ||||||||||| ||||||||  |||| ||||| || ||||||||  ||||||| ||||| 
Sbjct: 1232 ttcgagcagccgaagatgactatcgaaaagctcctcgagtacggaaacatgcttgtccaa 1291

                                                                        
Query: 329  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 388
            ||||| || ||||| ||| | || ||  | ||||| |  ||| ||||| |||| ||||| 
Sbjct: 1292 gagcaagagaatgtgaagagagttcaattggctgataagtacttgagcgaggctgctctt 1351

                        
Query: 389  ggtgatgctaac 400
            ||||||||||||
Sbjct: 1352 ggtgatgctaac 1363



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            |||||||||||||| ||||| ||||| || || |||||  || | ||| |||| ||||||
Sbjct: 1088 gacaccttcccaggccaatctattgatttctttggtgccttgagggctagggtttacgac 1147

                              
Query: 185  gatgaggtgcgcaagtgg 202
            ||||| ||| | ||||||
Sbjct: 1148 gatgaagtgaggaagtgg 1165

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||| ||||||||||| ||||||||||| |||||| | || |||||||| |||
Sbjct: 952  atccgtgatggccgtatggagaaattctactgggcacccaccagggaggaccgtattggt 1011

                    
Query: 65   gtctgcaa 72
            ||||||||
Sbjct: 1012 gtctgcaa 1019



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 68/84 (80%)
 Strand = Plus / Plus

                                                                        
Query: 316  catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 375
            |||||| |||||||||||||| || |||||| | || ||  | |||||||  ||||||  
Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322

                                    
Query: 376  ccaggcagctctgggtgatgctaa 399
            | |||| ||||| |||||||||||
Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                       
Query: 296 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 355
           |||||||||||||| ||  ||||||| |||||||||||||||||||| ||| | || || 
Sbjct: 3   aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62

                                                                   
Query: 356 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 411
           || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| ||||
Sbjct: 63  ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||||||||||||||||||||||||||||||||| ||  | || || ||||| |||
Sbjct: 390 atccgtgatggtcgtatggagaagttctactgggctcctactagagaagatcgtattggt 449

                  
Query: 65  gtctgca 71
           |||||||
Sbjct: 450 gtctgca 456



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 113 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 172
           |||||||| || ||||||||||| || |||||||| || || ||||||||  || | |||
Sbjct: 498 gtcaagattgttgacaccttccctggccaatccatcgatttcttcggtgcattgagggct 557

                                           
Query: 173 cgggtgtacgacgatgaggtgcgcaagtgggt 204
            | |||||||| ||||| ||| | ||||||||
Sbjct: 558 agagtgtacgatgatgaagtgaggaagtgggt 589

---

>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence
          Length = 633

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 451 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 510

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 511 gtgtgcaagggcatcttcc 529

---

>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence
          Length = 635

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 453 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 512

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 513 gtgtgcaagggcatcttcc 531

---

>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence
          Length = 639

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 457 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 516

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 517 gtgtgcaagggcatcttcc 535

---

>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence
          Length = 635

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 453 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 512

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 513 gtgtgcaagggcatcttcc 531

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 135/167 (80%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| || ||||| ||||| || |||||||| |||
Sbjct: 460 atggacaagttctactgggcgcccacccgggaggaccgcatcggcgtgtgcaagggcatc 519

                                                                       
Query: 80  ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 139
           ||||  ||||||   |||   ||||||   |||||| || |||||||| ||||||| || 
Sbjct: 520 ttccgcaccgacggcgtccccgacgagcacgtcgtccagctcgtcgacgccttcccgggc 579

                                                          
Query: 140 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacga 186
           || ||||| ||||| ||||| || || || || ||||||||||||||
Sbjct: 580 cagtccatcgacttcttcggcgccctccgcgcccgggtgtacgacga 626

---

>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence
          Length = 635

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 453 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 512

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 513 gtgtgcaagggcatcttcc 531

---

>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence
          Length = 635

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 453 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 512

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 513 gtgtgcaagggcatcttcc 531

---

>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence
          Length = 635

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 453 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 512

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 513 gtgtgcaagggcatcttcc 531

---

>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence
          Length = 637

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct: 455 atccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcggc 514

                              
Query: 65  gtctgcaagggtatcttcc 83
           || |||||||| |||||||
Sbjct: 515 gtgtgcaagggcatcttcc 533

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 8   cgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtc 67
           |||||||||||||||||||| ||||||||||| |||||| | || ||||| || ||||||
Sbjct: 798 cgtgatggtcgtatggagaaattctactgggcgcccaccagagaagaccgaattggtgtc 857

                          
Query: 68  tgcaagggtatcttc 82
           ||||  |||||||||
Sbjct: 858 tgcactggtatcttc 872

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                        
Query: 8    cgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtc 67
            |||||||||||||||||||| ||||||||||| |||||| | || ||||| || ||||||
Sbjct: 971  cgtgatggtcgtatggagaaattctactgggcgcccaccagagaagaccgaattggtgtc 1030

                           
Query: 68   tgcaagggtatcttc 82
            ||||  |||||||||
Sbjct: 1031 tgcactggtatcttc 1045

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||||||||||||||||||||||||||| || ||  | || ||||| || |||
Sbjct: 957  atccgtgatggtcgtatggagaagttctactgggcaccaacaagggaagaccgcattggt 1016

                                      
Query: 65   gtctgcaagggtatcttccagaccga 90
            || |||||||| || |||| ||||||
Sbjct: 1017 gtttgcaagggaattttccggaccga 1042

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
            (pJQ4)
          Length = 1655

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 151/189 (79%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            ||||||||||||||||||||||||||||| ||||| || ||  | || ||  | || |||
Sbjct: 918  atccgtgatggtcgtatggagaagttctattgggcaccaactagggaagatagaattggt 977

                                                                        
Query: 65   gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 124
            || ||||||||||| |||  ||||||||| ||   ||| ||  | ||  | ||||| |||
Sbjct: 978  gtttgcaagggtattttcaggaccgacaacgtgcctgaggaagccgttataaagattgtc 1037

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            || |||||||| |||||||| |||||||| || ||||||||| | || || || ||||| 
Sbjct: 1038 gataccttccctggacaatctattgacttctttggtgctctgagggcacgagtatacgat 1097

                     
Query: 185  gatgaggtg 193
            |||||||||
Sbjct: 1098 gatgaggtg 1106

---

>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence
          Length = 637

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 470 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 529

               
Query: 80  ttcc 83
           ||||
Sbjct: 530 ttcc 533

---

>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence
          Length = 635

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527

               
Query: 80  ttcc 83
           ||||
Sbjct: 528 ttcc 531

---

>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence
          Length = 633

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 466 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 525

               
Query: 80  ttcc 83
           ||||
Sbjct: 526 ttcc 529

---

>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence
          Length = 633

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 466 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 525

               
Query: 80  ttcc 83
           ||||
Sbjct: 526 ttcc 529

---

>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence
          Length = 635

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527

               
Query: 80  ttcc 83
           ||||
Sbjct: 528 ttcc 531

---

>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence
          Length = 639

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 79
           ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||
Sbjct: 472 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 531

               
Query: 80  ttcc 83
           ||||
Sbjct: 532 ttcc 535

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 5   atccgtgatggtcgtatggagaagttctactgggc 39
           |||||||||||||||||||||||||||||||||||
Sbjct: 188 atccgtgatggtcgtatggagaagttctactgggc 222



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 113 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 162
           |||||||| || || | |||||| |||||||| || ||||||||||||||
Sbjct: 296 gtcaagattgttgataacttccctggacaatctatcgactttttcggtgc 345

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| |||||||||||||| || |||||||| || ||  | |||||||||||||||
Sbjct: 767 atccgtgacggtcgtatggagaaattttactgggcaccaactagggacgaccgtatcggt 826

                                      
Query: 65  gtctgcaagggtatcttccagaccgac 91
           || ||||| ||||| |||  |||||||
Sbjct: 827 gtttgcaaaggtattttcaggaccgac 853



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 120 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 179
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 882 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 941

               
Query: 180 acga 183
           ||||
Sbjct: 942 acga 945

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 5   atccgtgatggtcgtatggagaagttctactgggc 39
           |||||||||||||||||||||||||||||||||||
Sbjct: 929 atccgtgatggtcgtatggagaagttctactgggc 963

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 5   atccgtgatggtcgtatggagaagttctactgggc 39
           |||||||||||||||||||||||||||||||||||
Sbjct: 948 atccgtgatggtcgtatggagaagttctactgggc 982

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                      
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctg 166
            ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1072 gacaccttcccgggccaatccattgactttttcggtgctctg 1113



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| ||||||||||||||||| |||||||| |||||| | || ||  | ||||||
Sbjct: 952  atccgtgacggtcgtatggagaagttttactgggcacccaccagggaagataggatcggt 1011

                                            
Query: 65   gtctgcaagggtatcttccagaccgacaatgt 96
            || ||||  ||||| |||  ||||||||||||
Sbjct: 1012 gtttgcacaggtattttcaggaccgacaatgt 1043

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
            |||||||| || || |||||||||| |||||||   ||||||||||| ||||| ||||| 
Sbjct: 1781 atccgtgacggccgcatggagaagtactactggaaccccacccgtgaggaccgcatcggc 1840

                                 
Query: 65   gtctgcaagggtatcttccag 85
            ||||||| ||| |||||||||
Sbjct: 1841 gtctgcatgggaatcttccag 1861



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 329  gagcaggacaatgtcaagcgtgtgcagct 357
            |||||||| ||||||||||| ||||||||
Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 64
           |||||||| |||||||||||||| || |||||||| || ||  | ||||||||| |||||
Sbjct: 766 atccgtgacggtcgtatggagaaattttactgggcaccaactagggacgaccgtgtcggt 825

                                      
Query: 65  gtctgcaagggtatcttccagaccgac 91
           || ||||| ||||| |||  |||||||
Sbjct: 826 gtttgcaaaggtattttcaggaccgac 852



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 120 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 179
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 881 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 940

               
Query: 180 acga 183
           ||||
Sbjct: 941 acga 944

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 5   atccgtgatggtcgtatggagaagttctactgggc 39
           ||||||||||||||||||||||| |||||||||||
Sbjct: 965 atccgtgatggtcgtatggagaaattctactgggc 999



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                  
Query: 113  gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 166
            |||||||||||||| | |||||| |||||||| ||||| || ||||||||||||
Sbjct: 1073 gtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctg 1126

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 2662 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 2721

              
Query: 185  ga 186
            ||
Sbjct: 2722 ga 2723

---

>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase pseudogene, partial sequence
          Length = 472

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 5   atccgtgatggtcgtatggagaagttctactgggctcc 42
           ||||| |||||||||||||| |||||||||||||||||
Sbjct: 382 atccgcgatggtcgtatggaaaagttctactgggctcc 419

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 125  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 184
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 972  gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 1031

              
Query: 185  ga 186
            ||
Sbjct: 1032 ga 1033

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 8   cgtgatggtcgtatggagaagttctactgggc 39
           |||||||| |||||||||||||||||||||||
Sbjct: 964 cgtgatgggcgtatggagaagttctactgggc 995

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 3   tgatccgtgatggtcgtatggagaagttctactgg 37
           |||| |||||||| |||||||||||||||||||||
Sbjct: 644 tgattcgtgatgggcgtatggagaagttctactgg 678

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                        
Query: 122  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 181
            |||||||||||||||||||| || || ||||| || |||||| || | ||||| || || 
Sbjct: 1080 gtcgacaccttcccaggacagtcaatagacttctttggtgctttgagagctcgagtttat 1139

                                  
Query: 182  gacgatgaggtgcgcaagtggg 203
            |||||||| ||| | |||||||
Sbjct: 1140 gacgatgaagtgagaaagtggg 1161



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 8    cgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtat 60
            ||||||||||| ||||| || |||||||||||||| || ||||| || |||||
Sbjct: 966  cgtgatggtcggatggataaattctactgggctccaactcgtgaagatcgtat 1018

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccgtgatggtcgtatggagaagttct--actgggctcccacccgtgacgaccgtatcg 62
            |||| |||||| ||||||||||||||||  ||||| |  | |||||||| ||||||||||
Sbjct: 952  atccttgatggacgtatggagaagttcttgactggcc--cgacccgtgaagaccgtatcg 1009

                   
Query: 63   gtgtctg 69
            |||||||
Sbjct: 1010 gtgtctg 1016

---

>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 8    cgtgatggtcgtatggagaagttctactgggctcccacccgtgacga 54
            |||||||| |||||||| || ||||||||||| || || ||||||||
Sbjct: 6938 cgtgatggacgtatggaaaaattctactgggcacctactcgtgacga 6892

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 506 tgcccgtgccggaaggttgcaccgacc 532
           |||| ||||||||||||||||||||||
Sbjct: 5   tgcctgtgccggaaggttgcaccgacc 31

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 506     tgcccgtgccggaaggttgcaccgacc 532
               |||| ||||||||||||||||||||||
Sbjct: 4541319 tgcctgtgccggaaggttgcaccgacc 4541345

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 506   tgcccgtgccggaaggttgcaccgacc 532
             |||| ||||||||||||||||||||||
Sbjct: 84693 tgcctgtgccggaaggttgcaccgacc 84719

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 374   agccaggcagctctgggtgatg 395
             ||||||||||||||||||||||
Sbjct: 51254 agccaggcagctctgggtgatg 51275

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  caagatcgtcgacaccttccc 135
            |||||||||||||||||||||
Sbjct: 3673 caagatcgtcgacaccttccc 3653

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 453   acccaccatctcttgctgcat 473
             |||||||||||||||||||||
Sbjct: 63550 acccaccatctcttgctgcat 63530

---

>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete
           cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 935 ctgatccgtgaaggaagaatggagaagttctactgg 970

---

>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    ggtgtctgcaagggtatcttccag 85
             |||||||||||||||||| |||||
Sbjct: 67265 ggtgtctgcaagggtatcatccag 67288

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   tgcataggaggaggtaaagg 488
             ||||||||||||||||||||
Sbjct: 46378 tgcataggaggaggtaaagg 46359

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1565 tgagccaggcagctctgggcgatg 1542

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  tgcataggaggaggtaaagg 488
            ||||||||||||||||||||
Sbjct: 1656 tgcataggaggaggtaaagg 1637

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   tgcataggaggaggtaaagg 488
             ||||||||||||||||||||
Sbjct: 32964 tgcataggaggaggtaaagg 32945

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 agcgtgtgcagcttgctgac 364
           ||||||||||||||||||||
Sbjct: 223 agcgtgtgcagcttgctgac 242

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  agtgacgagtctgtcgtcaa 117
           ||||||||||||||||||||
Sbjct: 308 agtgacgagtctgtcgtcaa 289

---

>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 8      cgtgatggtcgtatggagaagttctactgggc 39
              ||||| |||||||||||||| ||||| |||||
Sbjct: 103856 cgtgacggtcgtatggagaaattctattgggc 103825

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 8     cgtgatggtcgtatggagaagttctactgggc 39
             ||||| |||||||||||||| ||||| |||||
Sbjct: 82881 cgtgacggtcgtatggagaaattctattgggc 82850

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    caggagcaggacaatgtcaa 345
              ||||||||||||||||||||
Sbjct: 126419 caggagcaggacaatgtcaa 126438

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds
          Length = 1299

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 901 ctgatccgtgaaggaagaatggagaagttctactgg 936

---

>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 935 ctgatccgtgaaggaagaatggagaagttctactgg 970

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   tgcataggaggaggtaaagg 488
             ||||||||||||||||||||
Sbjct: 34681 tgcataggaggaggtaaagg 34662

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1659 tgagccaggcagctctgggcgatg 1636

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 2026 tgagccaggcagctctgggcgatg 2003

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 47      cgtgacgaccgtatcggtgt 66
               ||||||||||||||||||||
Sbjct: 3056327 cgtgacgaccgtatcggtgt 3056308

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    caggagcaggacaatgtcaa 345
              ||||||||||||||||||||
Sbjct: 106979 caggagcaggacaatgtcaa 106960

---

>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB33ZF10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1426

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 963 ctgatccgtgaaggaagaatggagaagttctactgg 998

---

>emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL79ZC02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 593

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 173 ctgatccgtgaaggaagaatggagaagttctactgg 208

---

>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZG11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1496

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 909 ctgatccgtgaaggaagaatggagaagttctactgg 944

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 372  tgagccaggcagctctgggtgatg 395
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 476 gaggaggtaaaggagcacagcaag 499
           |||||||||||||||| |||||||
Sbjct: 625 gaggaggtaaaggagcccagcaag 648

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   tgcataggaggaggtaaagg 488
             ||||||||||||||||||||
Sbjct: 27736 tgcataggaggaggtaaagg 27755

---

>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-D21
          Length = 1447

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 2   ctgatccgtgatggtcgtatggagaagttctactgg 37
           ||||||||||| ||  | ||||||||||||||||||
Sbjct: 922 ctgatccgtgaaggaagaatggagaagttctactgg 957

---

>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
             sequence
          Length = 116944

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 2     ctgatccgtgatggtcgtatggagaagttctactgg 37
             ||||||||||| ||  | ||||||||||||||||||
Sbjct: 97650 ctgatccgtgaaggaagaatggagaagttctactgg 97615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,294,174
Number of Sequences: 3902068
Number of extensions: 3294174
Number of successful extensions: 57587
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57219
Number of HSP's gapped (non-prelim): 322
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---