ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8o15 |
|---|---|
| Clone Library Name | barley_pub |
>DROS_DROSI (Q6XMH8) Drosocin precursor| Length = 64 Score = 32.7 bits (73), Expect = 0.24 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 30 AESGTPS-YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 A G P YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 19 ATPGKPRPYSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>DROS_DROME (P36193) Drosocin precursor| Length = 64 Score = 32.7 bits (73), Expect = 0.24 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 30 AESGTPS-YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 A G P YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 19 ATPGKPRPYSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein| (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95) Length = 868 Score = 31.6 bits (70), Expect = 0.54 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 42 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 TP+Y P+ PT P PAP +T+P RPPP Sbjct: 724 TPAYQSSPAGGHAPTPPTPAP-RTMPPTKPQPPARPPP 760
>IF1C_SOYBN (Q94KR7) Translation initiation factor IF-1, chloroplast precursor| Length = 138 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 42 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 TP PR H P+ + +P+ P H S + PPP+ Sbjct: 7 TPILHPRYCHHPTPSCTQFSPLALPPFHRTLSFLAPPPL 45
>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)| Length = 864 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +3 Query: 3 RHEGTSSMRAESG--TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAAS 137 R G +S +G PS PRPSR PT RPA + P N+ S Sbjct: 193 RANGNNSPSLSNGGFKPSRPPRPSRPPPPTPRRPASVNGSPSTNSDS 239
>SC6A5_MOUSE (Q761V0) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 63 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAEAPAATVQPPRV 53
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +3 Query: 45 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 P+Y+P P P P+P P P S + PPP Sbjct: 72 PTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPPP 108
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +3 Query: 57 PRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPVCMS 167 P P+ P P PAP Q AA+ RP PV +S Sbjct: 765 PAPAPPSTPPGPEPAPAQPAAPRAAAAQARPRPVAVS 801
>ATR_DROME (Q9VXG8) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein homolog) (ATR homolog) (dATR) (Meiotic protein 41) Length = 2517 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = -2 Query: 174 HNMTYIQEGALLVTL----HYGQVASELELDAVKWVDHA-WMDVGCMTAXQTR 31 HN+ Q + +T HY Q+ LE A+ W A W+D+GCMT + + Sbjct: 215 HNVLRSQSASSWITNPDVGHYAQLT--LEATAIMWSAVAKWLDMGCMTRQELK 265
>PGCB_BOVIN (Q28062) Brevican core protein precursor| Length = 912 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = +3 Query: 45 PSYSPRPSRHDRPT*PRPA-----PIQTLPVHNAASLIRPPP 155 P SP P +D P PRP P +TLP +L PPP Sbjct: 518 PGVSPPP--YDEPEAPRPPRVLGPPTKTLPTPREGNLASPPP 557
>PROK2_RAT (Q8R413) Prokineticin-2 precursor (PK2)| Length = 107 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 166 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 71 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>PROK2_MOUSE (Q9QXU7) Prokineticin-2 precursor (PK2) (Protein Bv8 homolog)| Length = 128 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 166 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 71 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>AMYG_CANAL (O74254) Glucoamylase 1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 946 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = -1 Query: 226 HIDCTHA*LSIRTQSDWS-QYDIHTGGGLISDAALWTGSV*IGAGRGQ--VGRSCLDGRG 56 H THA T +D + +YDIH GLI + A++ + I + +GRS G G Sbjct: 560 HDLATHAISPNATHADGTVEYDIHNIYGLIQERAIYEALLEIHPNKRPFIIGRSSFAGSG 619 Query: 55 LYDG 44 Y G Sbjct: 620 KYMG 623
>SC6A5_RAT (P58295) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 63 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAAAPAAAVQPPRV 53
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 42 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 158 TP++SP P + P P P LP+ ++ PPPV Sbjct: 314 TPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPV 352 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 63 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 PSRH P P A P+++ + ++PPP Sbjct: 172 PSRHGHPPPPTYAQPPPTPIYSPSPQVQPPP 202
>ILVD_BACSK (Q5WEM9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 554 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -1 Query: 196 IRTQSDWSQYDIHTGGGLISDAALWTGSV*IGAGRGQVGRSCLDGRGLYDGV 41 I SD+S D+H GG+ AA+ + +GA +G R + G+ LY+ V Sbjct: 304 ISPASDYSMDDVHKAGGV---AAIMKELIEMGAVKGD--RITITGKSLYENV 350
>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1034 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 148 GLISDAALWTGSV*IGAGRGQVGRSCLDGRGLYDGVPDSALMLLVPS 8 GL +LW G AGR +G +D RG Y D +L + P+ Sbjct: 261 GLSVGVSLWRGEEQFAAGRQPLGTPTVDERGHYAERVDFSLAVATPA 307
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = +3 Query: 36 SGTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 158 S TP+ SPRP P+ +PAP+ T PV A +++ P PV Sbjct: 903 STTPT-SPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPV 945
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +3 Query: 39 GTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 G+P+ SP P D+P P PI P L PP Sbjct: 722 GSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLSPAPP 760
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +3 Query: 18 SSMRAESGTPSYSPRPSRHDRPT*PRPAPIQTL--PVHNAASL 140 ++ R+ PS SPR +H RP R AP+ + P H+ SL Sbjct: 765 ATRRSPGPGPSQSPRSPKHTRPAELRLAPLTRVLTPPHDVDSL 807
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = +3 Query: 30 AESGTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 A+SG P+ SP+P PRP P P N S PPP Sbjct: 154 AQSGAPA-SPQPGAQ-----PRPYPQDPAPSPNPTSPASPPP 189
>CRSP7_HUMAN (O95402) CRSP complex subunit 7 (Cofactor required for Sp1| transcriptional activation subunit 7) (Transcriptional coactivator CRSP70) (Activator-recruited cofactor 70 kDa component) (ARC70) Length = 600 Score = 28.1 bits (61), Expect = 5.9 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 9/62 (14%) Frame = +3 Query: 3 RHEGT----SSMRAESGT-PSYSPRPSRHDRPT*PRPAPI---QTLPVHNAASL-IRPPP 155 RHEG+ S+ A G+ PS SPRP D P P P+ T PV L P Sbjct: 279 RHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESP 338 Query: 156 VC 161 VC Sbjct: 339 VC 340
>GUNH_CLOTM (P16218) Endoglucanase H precursor (EC 3.2.1.4) (EGH)| (Endo-1,4-beta-glucanase) (Cellulase H) Length = 900 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 45 PSYSPRPSRHDRPT*PRPAP 104 PSYSP+PS RPT P P Sbjct: 635 PSYSPKPSPTPRPTKPPVTP 654
>LRRK2_MOUSE (Q5S006) Leucine-rich repeat serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 2527 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 73 CLDGRGLYDGVPDSALMLLVPSCR 2 CL G + D P+S L + VPSCR Sbjct: 1748 CLVGSEVLDNRPESFLKITVPSCR 1771
>LRRK2_HUMAN (Q5S007) Leucine-rich repeat serine/threonine-protein kinase 2 (EC| 2.7.11.1) (Dardarin) Length = 2527 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 73 CLDGRGLYDGVPDSALMLLVPSCR 2 CL G + D P+S L + VPSCR Sbjct: 1748 CLVGSEVLDNHPESFLKITVPSCR 1771
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex| component SNF5) (Transcription factor TYE4) Length = 905 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 54 SPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 155 SP P H P P P Q+ P+ N ++ PPP Sbjct: 71 SPPPQTHQSPP---PPPQQSQPIANQSATSTPPP 101
>CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photoreceptor,| subunit alpha (CNG channel 1) (CNG-1) Length = 735 Score = 27.7 bits (60), Expect = 7.8 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = -2 Query: 132 LHYGQVASELELDAVKWVDHAW 67 +H+ +V +LE +KW D+ W Sbjct: 466 MHFRKVTKDLEARVIKWFDYLW 487
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +3 Query: 42 TPSYSPRPSRHDRPT*PR---PAPIQTLPVHNAASLIRPPPVCMS 167 +PS P PS+H P PAP P H + PPP+ +S Sbjct: 338 SPSQDPPPSQHCIPLPNHGLSPAPSNAQPQHCSPVQSHPPPLTVS 382
>YJHS_ECOLI (P39370) Hypothetical protein yjhS precursor| Length = 326 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 91 GQVGRSCLDGRGLYDGVPDSALMLLVPSCR 2 G VG++ R L +PD+A +L+VP CR Sbjct: 91 GTVGQALHIARKLLPFIPDNAGILIVPCCR 120
>ITCH_HUMAN (Q96J02) Itchy homolog E3 ubiquitin protein ligase (EC 6.3.2.-)| (Itch) (Atrophin-1-interacting protein 4) (AIP4) (NFE2-associated polypeptide 1) (NAPP1) Length = 903 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +3 Query: 3 RHEGTSSMRAESG--TPSYSPRPSRHDRPT*PRPAPIQTLP 119 R G +S +G PS PRPSR PT RPA + P Sbjct: 234 RVSGNNSPSLSNGGFKPSRPPRPSRPPPPTPRRPASVNGSP 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,972,365 Number of Sequences: 219361 Number of extensions: 983762 Number of successful extensions: 2774 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2762 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
