ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal9c23 |
|---|---|
| Clone Library Name | barley_pub |
>AMO_LENCU (P49252) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| (Fragment) Length = 667 Score = 77.0 bits (188), Expect = 2e-14 Identities = 30/57 (52%), Positives = 42/57 (73%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPTMEKDLPVC 177 + +V+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE NP+LK P + P C Sbjct: 609 KDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLPPRDFTWPGC 665
>AMO_PEA (Q43077) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| Length = 674 Score = 73.9 bits (180), Expect = 2e-13 Identities = 29/57 (50%), Positives = 41/57 (71%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPTMEKDLPVC 177 + +V+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE NP+LK + P C Sbjct: 616 KDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
>AMO_SCHPO (O42890) Putative copper amine oxidase (EC 1.4.3.6)| Length = 794 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/42 (52%), Positives = 27/42 (64%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 +V+W+T G H P EDFPIMP S L+P NFF+ NP L Sbjct: 594 IVVWHTFGMIHFPAPEDFPIMPAESIHLFLQPRNFFKHNPAL 635
>AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine oxidase)| Length = 683 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 LV+W++ G H P ED+PIMP ++ F LKP FF+ NP L Sbjct: 601 LVVWHSFGLTHFPRPEDWPIMPVDTTGFTLKPHGFFDENPTL 642
>AMO2_ARTS1 (Q07123) Copper methylamine oxidase precursor (EC 1.4.3.6) (MAOXII)| Length = 648 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/42 (50%), Positives = 27/42 (64%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 LV+WYT G HH+ ED+P+MP + F L+P FF NP L Sbjct: 585 LVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTL 626
>AMO1_ARTS1 (Q07121) Copper amine oxidase precursor (EC 1.4.3.6) (MAOXI)| Length = 648 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/42 (50%), Positives = 27/42 (64%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 LV+WYT G HH+ ED+P+MP + F L+P FF NP L Sbjct: 585 LVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTL 626
>PAOX_ARTGO (P46881) Phenylethylamine oxidase precursor (EC 1.4.3.6) (Amine| oxidase) Length = 638 Score = 48.5 bits (114), Expect = 8e-06 Identities = 19/42 (45%), Positives = 28/42 (66%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 +V+W+T G H P ED+PIMP + F L+P FF+ +P+L Sbjct: 582 IVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>ABP1_HUMAN (P19801) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) (Kidney amine oxidase) (KAO) Length = 751 Score = 45.4 bits (106), Expect = 7e-05 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNPILKQRPTM 156 LV W T+GF HIP ED P T +S F L+P NFF +P L R T+ Sbjct: 665 LVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 714
>ABP1_MOUSE (Q8JZQ5) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) Length = 751 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNPILKQRPTM 156 LV W T+GF HIP ED P T + F ++P NFFE +P L R T+ Sbjct: 665 LVAWVTVGFLHIPHSEDVPNTATPGNCVGFLIRPFNFFEEDPSLASRDTV 714
>ABP1_RAT (P36633) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) Length = 746 Score = 45.1 bits (105), Expect = 9e-05 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNPILKQRPTM 156 LV W T+GF HIP ED P T +S F L+P NFF +P L R T+ Sbjct: 660 LVAWVTVGFLHIPHSEDVPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 709
>AMO_PICAN (P12807) Peroxisomal copper amine oxidase (EC 1.4.3.6) (Methylamine| oxidase) Length = 692 Score = 43.1 bits (100), Expect = 3e-04 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPT 153 ++ ++T G H P EDFP+MP + L+P +FF NP L +P+ Sbjct: 614 ILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPS 660
>AOC3_PONPY (Q5R9I0) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 + LV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOC3_HUMAN (Q16853) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (HPAO) Length = 762 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 + LV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOC3_BOVIN (Q9TTK6) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 + LV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOCY_BOVIN (O46406) Copper amine oxidase, lung isozyme precursor (EC 1.4.3.6)| (Amine oxidase [copper-containing]) (BOLAO) Length = 762 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 + LV W T GF HIP ED P TV + F L+P NFF+ P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEP 714
>AOCX_BOVIN (Q29437) Copper amine oxidase, liver isozyme precursor (EC 1.4.3.6)| (Amine oxidase [copper-containing]) (Serum amine oxidase) (SAO) Length = 762 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 + LV W T GF HIP ED P TV + F L+P NFF+ P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEP 714
>AOC3_RAT (O08590) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (VP97) Length = 762 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 LV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 673 LVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOC3_MOUSE (O70423) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 764 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNP 132 LV W T GF HIP ED P T +S F L+P NFF+ +P Sbjct: 673 LVAWVTAGFLHIPHAEDIPNTVTAGNSVGFFLRPYNFFDEDP 714
>AMO_KLEAE (P49250) Copper amine oxidase precursor (EC 1.4.3.6) (Monamine| oxidase) (Tyramine oxidase) Length = 755 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = +1 Query: 16 VLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQR 147 V+W T G H+ E++PIMPT + LKP NFF+ P L ++ Sbjct: 710 VVWITTGTTHVARAEEWPIMPTEWALALLKPWNFFDETPTLGEK 753
>AMO1_ASPNG (Q12556) Copper amine oxidase 1 (EC 1.4.3.6)| Length = 671 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 +V+W T G H P ED+P+MP ++P +FF +NP L Sbjct: 607 VVVWSTFGITHNPRVEDWPVMPVEIFQLMIRPADFFTANPSL 648
>AMO_ECOLI (P46883) Copper amine oxidase precursor (EC 1.4.3.6) (Tyramine| oxidase) (2-phenylethylamine oxidase) Length = 757 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/41 (46%), Positives = 24/41 (58%) Frame = +1 Query: 16 VLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 138 V+W T G H+ E++PIMPT LKP NFF+ P L Sbjct: 710 VVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 750
>AOC2_MOUSE (Q812C9) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 757 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 LV W T F HIP ED P TV + F L+P NFF +P Sbjct: 671 LVAWVTASFLHIPHAEDIPNTVTVGNRVGFLLRPYNFFNEDP 712
>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 756 Score = 38.1 bits (87), Expect = 0.011 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +1 Query: 13 LVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 132 LV W T F HIP ED P T+ + F L+P NFF+ +P Sbjct: 670 LVAWVTASFLHIPHAEDIPNTVTLGNRVGFLLRPYNFFDEDP 711
>PURU_CORS1 (Q46339) Formyltetrahydrofolate deformylase (EC 3.5.1.10)| (Formyl-FH(4) hydrolase) Length = 286 Score = 32.7 bits (73), Expect = 0.47 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 7 RXLVLWYTLGFHHIPCQED 63 R LV WY +GFHHIP +D Sbjct: 130 RSLVEWYGIGFHHIPISKD 148
>R1AB_CVMJD (P26627) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28-p210 fusion] (Fragment) Length = 500 Score = 32.0 bits (71), Expect = 0.81 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -1 Query: 240 IPVLYVESTHVLWCMFSRGSDADGEILLHGGSLLEDGVALEEVDRLEVE 94 +PV +T V++ ++ DAD ++L + EDGVA E+VD + E Sbjct: 212 MPVYDFNATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSE 260
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = -1 Query: 219 STHVLWCMFSRGSDADGEILLHGGSLLEDGVALEEVDRLEVE-AGRHSGHDGEVLLTRDV 43 +T V++ ++ DAD ++L + EDGVA E+VD + E H+G G+ + DV Sbjct: 950 ATDVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTG--GQEMTEPDV 1007 Query: 42 VEPQ 31 V Q Sbjct: 1008 VGSQ 1011
>NADB_PYRHO (O57765) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 464 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = -1 Query: 228 YVESTHVLWCMFSRGSDADGEILLHG----GSLLEDGVALEEVDRLEVEAGRH 82 Y+ ++W + S+ S+A + HG G+ LE G + + ++ E G+H Sbjct: 71 YINDEEIVWNVISKSSEAHDFLTSHGVTFTGNELEGGHSYPRIFTIKSETGKH 123
>GSPF_PSEAE (Q00513) General secretion pathway protein F| Length = 405 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 150 GSLLEDGVALEEVDRLEVEAGRHSGHDGEVL 58 GSL E A E+ R V AG H+GH G VL Sbjct: 120 GSLREFPTAFPELYRATVAAGEHAGHLGPVL 150
>NADB_PYRAB (Q9V2R0) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 464 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = -1 Query: 228 YVESTHVLWCMFSRGSDADGEILLHG----GSLLEDGVALEEVDRLEVEAGRH 82 Y+ V+W + S+ ++A ++ HG G+ LE G + V ++ E G+H Sbjct: 71 YINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSETGKH 123
>AXE1_TRIRE (Q99034) Acetylxylan esterase precursor (EC 3.1.1.72)| Length = 302 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = -3 Query: 340 TEARLGKSPAPTSVYWTHHGDSGSLRTTSC 251 T R G SP PT +W G G T C Sbjct: 256 TSTRTGSSPGPTQTHWGQCGGQGWTGPTQC 285
>MLTA_ECOLI (P0A935) Membrane-bound lytic murein transglycosylase A precursor| (EC 3.2.1.-) (Murein hydrolase A) (Mlt38) Length = 365 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%) Frame = +1 Query: 211 MCALDV------QHWDVARGMRSCVGFR----NHHGVSSILKLAPG 318 M ALDV QH+D+ +G+ G R NH+G +LK APG Sbjct: 313 MVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPG 358
>MLTA_ECO57 (P0A936) Membrane-bound lytic murein transglycosylase A precursor| (EC 3.2.1.-) (Murein hydrolase A) (Mlt38) Length = 365 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%) Frame = +1 Query: 211 MCALDV------QHWDVARGMRSCVGFR----NHHGVSSILKLAPG 318 M ALDV QH+D+ +G+ G R NH+G +LK APG Sbjct: 313 MVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPG 358
>CLPB_CHRVO (Q7NWN7) Chaperone clpB| Length = 859 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = -1 Query: 228 YVESTHVLWCMFSRGSDADGEILLHGG---SLLEDGVALEEVDRLEVEAGRHSGHDGEVL 58 Y+E H+L M G +L G L+ G+ + +DRL R GH GE+ Sbjct: 28 YIEPQHLLLAMLDDAEAGVGGLLARAGVNVPALKAGLK-QAIDRLP----RVQGHGGEIT 82 Query: 57 LTRDV 43 ++RD+ Sbjct: 83 VSRDL 87
>MT_PARLI (P80367) Metallothionein (MT)| Length = 65 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 242 TSQCCTSRAHMYCGACSHAVATQTG 168 T +CC A + CG CS+A TG Sbjct: 24 TGKCCKDGASVCCGTCSNAACKCTG 48
>MAGA1_HUMAN (P43355) Melanoma-associated antigen 1 (MAGE-1 antigen) (Antigen| MZ2-E) Length = 309 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = -1 Query: 165 ILLHGGSLLEDGVALEEVDRLEVEAGRHSGHDGEV--LLTRDVVEPQRVPQHQVPCS 1 I + GG E+ + EE+ +EV GR GE LLT+D+V+ + + QVP S Sbjct: 202 IAMEGGHAPEEEI-WEELSVMEVYDGREHSAYGEPRKLLTQDLVQEKYLEYRQVPDS 257
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Frame = +2 Query: 11 TWC--CGTRWGSTTSLVRRTSPSCPLC 85 T+C C RW S T R S SCP C Sbjct: 374 TYCLRCIRRWRSATQFENRISKSCPQC 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,020,286 Number of Sequences: 219361 Number of extensions: 1745994 Number of successful extensions: 5166 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4943 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5155 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
