>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
 Frame = +1

Query: 28   SRKSLVQILVDMLMLDLQGSSKKPIDATEPSFRLYGCHANITYSRPQSSDGVPPLVSRRV 207
            +R +LVQ+L+DM+  +++ +S   +  T P  RLYGC +N+ Y R Q  +G+PPLV RRV
Sbjct: 2826 TRANLVQLLLDMIRPEME-TSPSELAITNPQ-RLYGCQSNVVYGRSQLLNGLPPLVFRRV 2883

Query: 208  LETLTYLARNHPNVAKLLLFLQFPYPPTRHTETLDQRTGKAVLVEVGEQQN-AFAXXXXX 384
            LE LTYLA NH  VA +L +       +     L  R GK  +  V + ++         
Sbjct: 2884 LEVLTYLATNHSAVADMLFYFD-----SSLLSQLSSRKGKEKVTHVTDSRDLEIPLVVFL 2938

Query: 385  XXXXXXXYMRSVAHLEQLLNLLEVVMLNAENEI 483
                    ++S +HL  ++ LL+VV+  A + I
Sbjct: 2939 KLLNRPQLLQSTSHLGLVMGLLQVVVYTAASRI 2971

>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
 Frame = +1

Query: 28   SRKSLVQILVDMLMLDLQGSSKKPIDATEPSFRLYGCHANITYSRPQSSDGVPPLVSRRV 207
            +R +LVQ+L+DM+  +++ +    +  T P  RLYGC  N+ Y R Q  +G+PPLV RRV
Sbjct: 2809 TRANLVQLLLDMIRPEME-TLPSELALTNPQ-RLYGCQLNVVYGRSQLLNGLPPLVFRRV 2866

Query: 208  LETLTYLARNHPNVAKLLLFLQFPYPPTRHTETLDQRTGK-AVLVEVGEQQNAFAXXXXX 384
            LE LTYLA NH  VA +L +       +     L  R GK  V  E   +          
Sbjct: 2867 LEVLTYLATNHSAVADMLFYFD-----SSLLSQLSSRKGKEKVTHETDSRDLEIPLVVFL 2921

Query: 385  XXXXXXXYMRSVAHLEQLLNLLEVVMLNAENEI 483
                    ++S +HL  ++ LL+VV+  A + I
Sbjct: 2922 KLLNRPQLLQSTSHLALVMGLLQVVVYTAASRI 2954

>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)|
          Length = 809

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = -3

Query: 454 LPED*VTVQDELHFSYKEADLIELKVERVQKHSVVPRLPQGQPFQSSDQVFQYGGWVGRG 275
           +PED VTV DE         + E+ +E  +KH+        + +Q SD+V Q+       
Sbjct: 671 IPEDLVTVFDERELELLIGGIAEIDIEDWKKHT------DYRGYQESDEVIQWFWKCVSE 724

Query: 274 TEEKVRA*PHLDDFSPGMSEFPAHDGKPM 188
            + + RA   L  F+ G S  P +  K +
Sbjct: 725 WDNEQRA--RLLQFTTGTSRIPVNGFKDL 751

>GR36D_DROME (Q8INZ1) Putative chemosensory receptor 36d|
          Length = 410

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 44  FKFLWTCLCLICRAL-LRNQLMQLSHHLGCMDAMQISHIHALN 169
           FK L TC  L  RA  +RNQ+M L+   GC  A+       LN
Sbjct: 352 FKSLQTCFDLQLRAQPIRNQIMSLNQECGCPFALDFFFCTVLN 394

>VBR1_PHUV (Q06927) BR1 protein|
          Length = 256

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +1

Query: 34  KSLVQILVDMLMLDLQGSSKKPIDATEPSFRLYGCHANITYSRPQSSDGVPPLVSRRVLE 213
           K ++ +  D +MLDL+GS       T  S R Y C +      P S +GV   +S+  + 
Sbjct: 179 KRVISVEKDSMMLDLEGS-------TCLSSRRYNCWSTFKDLDPSSCNGVYDNISKNAI- 230

Query: 214 TLTYLARNHPNVAKLLLFLQF 276
            L Y       ++K   F+ F
Sbjct: 231 -LVYYCWMSDAMSKASTFVSF 250

>SDHD_BACHD (Q9KC12) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 442

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 266 FFSSPTHPPAILKHLIRGL-ERLSLWKSG 349
           FF+ PTH P++L  L+ GL ER+S+ + G
Sbjct: 299 FFAEPTHSPSMLLGLLTGLHERISVQEIG 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,882,096
Number of Sequences: 219361
Number of extensions: 1788865
Number of successful extensions: 4505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4502
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)