>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  328 bits (841), Expect = 6e-90
 Identities = 162/163 (99%), Positives = 162/163 (99%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 232
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 233 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 412
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120

Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF
Sbjct: 121 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 163

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  295 bits (756), Expect = 4e-80
 Identities = 147/165 (89%), Positives = 154/165 (93%), Gaps = 2/165 (1%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 229
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 230 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 406
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTM
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTM 119

Query: 407 GGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           GGFYIAP+FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKSF
Sbjct: 120 GGFYIAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 164

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  259 bits (661), Expect = 4e-69
 Identities = 132/169 (78%), Positives = 147/169 (86%), Gaps = 6/169 (3%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 220
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 221 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 394
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120

Query: 395 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           DN M GFYIA  FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKSF
Sbjct: 121 DNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSF 169

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  250 bits (639), Expect = 2e-66
 Identities = 128/167 (76%), Positives = 142/167 (85%), Gaps = 4/167 (2%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 226
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 227 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDN 400
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDN
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114

Query: 401 TMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           TM G YIAPAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKSF
Sbjct: 115 TMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSF 161

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  207 bits (528), Expect = 1e-53
 Identities = 105/158 (66%), Positives = 123/158 (77%)
 Frame = +2

Query: 68  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 247
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 248 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 427
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 428 AFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           AFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKSF
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSF 173

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  206 bits (524), Expect = 3e-53
 Identities = 104/160 (65%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
 Frame = +2

Query: 68  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 241
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 242 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 421
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 422 APAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           APAFMDKLVVH++KNFMTLPN+K+PLILGIWGGKGQGKSF
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSF 173

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  204 bits (520), Expect = 1e-52
 Identities = 105/174 (60%), Positives = 129/174 (74%), Gaps = 11/174 (6%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 202
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 203 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 379
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 380 RKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           R+Y+ DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSF 173

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  204 bits (520), Expect = 1e-52
 Identities = 105/174 (60%), Positives = 129/174 (74%), Gaps = 11/174 (6%)
 Frame = +2

Query: 53  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 202
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 203 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 379
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 380 RKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           R+Y+ DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSF 173

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  200 bits (509), Expect = 2e-51
 Identities = 106/173 (61%), Positives = 123/173 (71%), Gaps = 16/173 (9%)
 Frame = +2

Query: 71  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 208
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 209 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 382
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 383 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           +Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKSF
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSF 177

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  197 bits (502), Expect = 1e-50
 Identities = 101/164 (61%), Positives = 121/164 (73%), Gaps = 4/164 (2%)
 Frame = +2

Query: 62  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 229
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 230 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 409
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ 
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLD 133

Query: 410 GFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           GFYIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKSF
Sbjct: 134 GFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSF 177

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  196 bits (499), Expect = 3e-50
 Identities = 99/157 (63%), Positives = 124/157 (78%), Gaps = 3/157 (1%)
 Frame = +2

Query: 80  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 250
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 430
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 431 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           F+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKSF
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSF 177

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/154 (66%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
 Frame = +2

Query: 83  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 259
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 260 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 439
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 440 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           KLVVH++KNF+ LPNIKIPLILG+WGGKGQGKSF
Sbjct: 138 KLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSF 171

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  194 bits (494), Expect = 1e-49
 Identities = 100/175 (57%), Positives = 121/175 (69%), Gaps = 14/175 (8%)
 Frame = +2

Query: 59  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 196
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 197 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 376
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 377 LRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           L+ Y  DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQGKSF
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSF 172

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  194 bits (493), Expect = 1e-49
 Identities = 104/157 (66%), Positives = 120/157 (76%), Gaps = 3/157 (1%)
 Frame = +2

Query: 80  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 250
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 430
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 431 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           F+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKSF
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 175

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  193 bits (490), Expect = 3e-49
 Identities = 100/175 (57%), Positives = 121/175 (69%), Gaps = 14/175 (8%)
 Frame = +2

Query: 59  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 196
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 197 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 376
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 377 LRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           LR Y +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLILG+WGGKGQGKSF
Sbjct: 116 LRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSF 170

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  132 bits (333), Expect = 5e-31
 Identities = 65/112 (58%), Positives = 83/112 (74%), Gaps = 3/112 (2%)
 Frame = +2

Query: 215 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 385
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 386 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
             F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK+F
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTF 146

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = +2

Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+F
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTF 45

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 37/43 (86%)
 Frame = +2

Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 541
           +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+F
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTF 45

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -3

Query: 330 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 184
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +2

Query: 83  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 262
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 263 D--QQDITRGKGIVDSLFQAPTGDG 331
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 418 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 242
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -2

Query: 523 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 344
           L    T++E    +  G ++ G  +  L       +E   G  E + P+A  DVL+ AE 
Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212

Query: 343 GLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 239
           G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 213 GVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>ACCA_STRT2 (Q5M5R1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 275 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 445
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRSVVTFINTAGAYPGVGAEERGQ 121

Query: 446 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 532
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>ACCA_STRR6 (Q8DR13) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 275 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 445
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 446 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 532
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>ACCA_STRPN (Q9FBB7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 275 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 445
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 446 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 532
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 325 ARGRLEERVHDALPSGDVLLVVG 257
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>ACCA_STRT1 (Q5M174) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 275 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 445
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 121

Query: 446 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 532
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +2

Query: 149  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 328
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 329  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 487
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related|
           protein) (Fragment)
          Length = 255

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 136
           QG PS     +  +   G+PA  P+ FLGK +K  V
Sbjct: 52  QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87

>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233

Query: 325 ARGRLEERVHDALPSGDVLLVVG 257
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   L+ A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233

Query: 325 ARGRLEERVHDALPSGDVLLVVG 257
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 385
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 161 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 319
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 499 EWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVAR 320
           +W  + G+G     E +N L  +  S+ + S G        +  DV  G E    G V+ 
Sbjct: 83  DWAEEGGEGSVAVEETENSLESQDVSEGDESEG------DASEGDVSEGDES--EGDVSE 134

Query: 319 GRLEERVHDALPSGDVLLVVGDI 251
           G + ER     PS +  L VG++
Sbjct: 135 GAVSERAEFPEPSEEAKLFVGNL 157

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 218 RNTDKWKGLAYDISDDQQDITRGKGI 295
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,885,820
Number of Sequences: 219361
Number of extensions: 1402465
Number of successful extensions: 5186
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5174
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)