ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8n01 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 136 bits (343), Expect = 2e-32 Identities = 66/66 (100%), Positives = 66/66 (100%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD Sbjct: 170 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 229 Query: 183 DADIGY 200 DADIGY Sbjct: 230 DADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 94.4 bits (233), Expect = 1e-19 Identities = 43/58 (74%), Positives = 50/58 (86%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 176 IAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 170 IAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 92.8 bits (229), Expect = 3e-19 Identities = 41/58 (70%), Positives = 49/58 (84%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 176 IAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 171 IAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 77.4 bits (189), Expect = 1e-14 Identities = 35/64 (54%), Positives = 47/64 (73%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 I+GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV Sbjct: 117 ISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVAL 176 Query: 183 DADI 194 D ++ Sbjct: 177 DEEV 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 75.9 bits (185), Expect = 4e-14 Identities = 34/64 (53%), Positives = 47/64 (73%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA E +G LV+ Sbjct: 97 IAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMK 156 Query: 183 DADI 194 D++I Sbjct: 157 DSEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 75.5 bits (184), Expect = 6e-14 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 I GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA++E +G L+ Sbjct: 117 ITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAP 176 Query: 183 DADI 194 + DI Sbjct: 177 NDDI 180
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/64 (54%), Positives = 45/64 (70%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 96 IAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAK 155 Query: 183 DADI 194 D +I Sbjct: 156 DNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/64 (54%), Positives = 45/64 (70%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 96 IAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAK 155 Query: 183 DADI 194 D +I Sbjct: 156 DNEI 159
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 72.0 bits (175), Expect = 6e-13 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA++E +G+L+ Sbjct: 115 IAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAK 174 Query: 183 DADI 194 + +I Sbjct: 175 EDEI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 71.6 bits (174), Expect = 8e-13 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA +EL++G+L Sbjct: 96 IAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAK 155 Query: 183 DADI 194 D++I Sbjct: 156 DSEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 71.6 bits (174), Expect = 8e-13 Identities = 33/64 (51%), Positives = 44/64 (68%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ Sbjct: 91 IAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150 Query: 183 DADI 194 +I Sbjct: 151 ADEI 154
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 70.9 bits (172), Expect = 1e-12 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA +EL++G+L Sbjct: 96 IAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAK 155 Query: 183 DADI 194 D++I Sbjct: 156 DSEI 159
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 68.6 bits (166), Expect = 7e-12 Identities = 34/64 (53%), Positives = 46/64 (71%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 +AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA +EL G L+ Sbjct: 159 VAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEK 218 Query: 183 DADI 194 + +I Sbjct: 219 EENI 222
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/64 (46%), Positives = 43/64 (67%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAG+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA +E +G L Sbjct: 118 IAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTAR 177 Query: 183 DADI 194 D +I Sbjct: 178 DEEI 181
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 60.1 bits (144), Expect = 2e-09 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV 179 IAGWIGWVGR+YL + + +EI I++ +A I+ GF WP AA +E ++G+L Sbjct: 96 IAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTA 155 Query: 180 DDADI 194 D +I Sbjct: 156 KDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 58.9 bits (141), Expect = 5e-09 Identities = 28/64 (43%), Positives = 37/64 (57%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAGWIGW G+ YL KP EIIID+ A + + GF WP+ A +E NG L+ Sbjct: 119 IAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLAS 178 Query: 183 DADI 194 + +I Sbjct: 179 NDEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 56.2 bits (134), Expect = 3e-08 Identities = 30/64 (46%), Positives = 38/64 (59%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 +AG IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL Sbjct: 114 VAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREK 173 Query: 183 DADI 194 D +I Sbjct: 174 DENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 48.9 bits (115), Expect = 6e-06 Identities = 28/61 (45%), Positives = 35/61 (57%) Frame = +3 Query: 3 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 182 IAG +GW GR YL E K EIIID+ A + + G IWPV A ELI+G + V Sbjct: 117 IAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVP 172 Query: 183 D 185 + Sbjct: 173 E 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 231 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 350 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -2 Query: 357 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 256 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 204 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 290 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 204 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 290 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 204 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 290 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 204 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 290 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>RHO_NEIGO (Q06447) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = -2 Query: 429 IVLNNLNNGKIHTCEERTQ*LYKIGFSFLNTREVPFLHDPISSYTKPTQIDTTSPH 262 IV + G+ TC + + GF FL + + +L P Y PTQI + H Sbjct: 38 IVRQMMKKGEGFTCSGTLE-ILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLH 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,710,190 Number of Sequences: 219361 Number of extensions: 1055967 Number of successful extensions: 3041 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2849 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3036 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
