>MSH3_MOUSE (P13705) DNA mismatch repair protein Msh3 (Repair-3 protein)|
           (REP-1)
          Length = 1091

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +1

Query: 64  KNFEKLVQ--CDQRLHQLSQQTDVILDSSVFEPRCSIFEDPVELKCHDFANLKDEREDLP 237
           K+ EKL +  CD  L Q   QT+ + +     PRC+ FED    +  +    +D +    
Sbjct: 98  KSLEKLKEFCCDSALPQNRVQTEALRERLEVLPRCTDFEDITLQRAKNAVLSEDSKSQAN 157

Query: 238 GFSGSVSPCAGSSMSTKNDTNDC--FGKQPEFVAQPM 342
                  PC          T+DC  F K+ + V  P+
Sbjct: 158 QKDSQFGPCP----EVFQKTSDCKPFNKRSKSVYTPL 190

>CYSKP_CAPAN (P31300) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)|
           (O-acetylserine sulfhydrylase) (O-acetylserine
           (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B)
          Length = 374

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 596 PRRYCAISSSDSFVGTTLLAIEGLPEVICSLMQFPRWLTKSSTDIDGLS 450
           P R C++ S  S V   +    G P V+C  +      TKS T+I+GL+
Sbjct: 21  PNRICSLRSQQSLVFDNVNRKVGFPSVVCKAVSVQ---TKSPTEIEGLN 66

>LIPA_STRAW (Q82AP7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 328

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 58  LGKNFEKLVQCDQRLHQLSQQTDVILDSSVFEPRCSIFEDPVE--LKCHDFANLKDERED 231
           +G+  E++ +  ++LH      ++I  +    P  S+   PVE  +K H+F  LK+E E+
Sbjct: 228 MGETREEVSEALRQLHDAG--CELITITQYLRP--SVRHHPVERWVKPHEFVELKEEAEE 283

Query: 232 LPGFSGSVS 258
           + GFSG +S
Sbjct: 284 I-GFSGVMS 291

>ILV2_BRANA (P14874) Acetolactate synthase 2, chloroplast precursor (EC|
           2.2.1.6) (Acetolactate synthase II) (Acetohydroxy-acid
           synthase II) (ALS II)
          Length = 637

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 352 ASAVNAQPVSRNV-NGVAQEFNIPNWWSQLKVPGLRPSMSVDDLVSHL 492
           A++V   PV  +V   V Q+F IPNW   +++P    +M     VSHL
Sbjct: 218 ATSVRPGPVLIDVPKDVQQQFAIPNWEQPMRLPLYMSTMPKPPKVSHL 265

>ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11|
          Length = 1282

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 55  LLGKNFEKLVQCDQRLHQLSQQTDVILDSSVFEPRCSIFEDPV--ELKCHD--FANLKDE 222
           L+ KNF+ L++C   + ++++    +          S F  PV  E+K +D   ANLKDE
Sbjct: 547 LMKKNFQDLIKCTNNMKRVTKMVSSL----------SSFTSPVANEIKNNDKLLANLKDE 596

Query: 223 RED 231
             D
Sbjct: 597 NND 599

>MDM12_YEAST (Q92328) Mitochondrial inheritance component MDM12|
          Length = 271

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -1

Query: 317 CFPKQSFVSFLVDIDEPAHGDT----DPENP 237
           C  KQ F+SFL D+ +PA  D     DP+ P
Sbjct: 170 CLSKQLFLSFLCDVSDPALDDNQTVLDPKGP 200

>VAMP5_RAT (Q9Z2J5) Vesicle-associated membrane protein 5 (VAMP-5) (Myobrevin)|
          Length = 102

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 49  TTLLGKNFEKLVQCDQRLHQLSQQTDVILDSS 144
           T ++  NF+K+++ D +L +L Q++D +LD S
Sbjct: 17  TEIMLNNFDKVLERDGKLSELQQRSDQLLDMS 48

>PSBB_CYACA (O19928) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 509

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 459 WSKPGHFQLTPPVWDIEFLSYTIYVSADWLCIYSTSSWVHWLSDKF 322
           WS  G     P +W  E ++ T  V +  L + S   WV+W  D F
Sbjct: 78  WSITGESVSNPGLWSFEGVALTHIVLSGLLFLASIWHWVYWDLDLF 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,644,831
Number of Sequences: 219361
Number of extensions: 1985991
Number of successful extensions: 4119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4118
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)