Clone Information

BLAST Search Result

Clone Name	baal8m07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (E...	188	1e-47
2	RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (E...	124	2e-28
3	RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (E...	124	2e-28
4	RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (E...	122	7e-28
5	RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (E...	120	5e-27
6	RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II sub...	111	2e-24
7	RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II sub...	109	8e-24
8	RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa pol...	93	8e-19
9	RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa pol...	92	1e-18
10	RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II sub...	65	1e-10
11	RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II sub...	65	2e-10
12	RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II sub...	65	2e-10
13	RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 k...	62	1e-09
14	RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 k...	60	4e-09
15	RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC...	60	7e-09
16	RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC...	58	3e-08
17	RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subu...	57	5e-08
18	RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC...	57	6e-08
19	RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2....	56	8e-08
20	RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subu...	56	8e-08
21	RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC...	56	1e-07
22	RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2....	55	1e-07
23	RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2....	54	4e-07
24	RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subu...	52	1e-06
25	RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2....	45	1e-04
26	RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2....	45	2e-04
27	RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2....	44	3e-04
28	RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2....	42	0.001
29	RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2....	37	0.039
30	RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2....	37	0.039
31	RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2....	37	0.051
32	RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2....	33	0.56
33	RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2....	33	0.73
34	RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2....	32	1.3
35	RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2....	32	2.1
36	INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)	32	2.1
37	KINH_STRPU (P35978) Kinesin heavy chain	32	2.1
38	DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphat...	31	2.8
39	TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon ca...	31	2.8
40	DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase ...	31	2.8
41	RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2....	31	3.6
42	CI010_HUMAN (Q9NZB2) Protein C9orf10	31	3.6
43	NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 pr...	30	6.2
44	THYX_PYRHO (O58498) Thymidylate synthase thyX (EC 2.1.1.148) (TS...	30	6.2
45	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	30	6.2
46	CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas...	30	6.2
47	INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)	30	6.2
48	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	8.1
49	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	30	8.1
50	ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains:...	30	8.1
51	TSGA_SALTY (Q8ZLK7) Protein tsgA	30	8.1
52	TSGA_SALTI (Q8Z1Z8) Protein tsgA	30	8.1
53	TSGA_SALPA (Q5PLW2) Protein tsgA	30	8.1
54	TSGA_SALCH (Q57J00) Protein tsgA	30	8.1
55	DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein...	30	8.1

>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.6 kDa polypeptide)
          Length = 116

 Score =  188 bits (478), Expect = 1e-47
 Identities = 90/114 (78%), Positives = 102/114 (89%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 538
           Y+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK  FE E  +F +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSN 114

to top

>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11) (RPB14)
          Length = 117

 Score =  124 bits (311), Expect = 2e-28
 Identities = 57/105 (54%), Positives = 77/105 (73%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP V FAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 511
           YK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

to top

>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score =  124 bits (311), Expect = 2e-28
 Identities = 57/105 (54%), Positives = 77/105 (73%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP V FAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 511
           YK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

to top

>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score =  122 bits (307), Expect = 7e-28
 Identities = 57/107 (53%), Positives = 78/107 (72%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 517
           YK+PHPL++K ++RI T +  SP +A+  AI DL  EL   ++ F+D
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKD 107

to top

>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
          Length = 117

 Score =  120 bits (300), Expect = 5e-27
 Identities = 56/107 (52%), Positives = 77/107 (71%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ EG KK+  E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 517
           YKLPHPL++K ++RI T S+ SP +A+  AI DL  EL   ++ F +
Sbjct: 61  YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFRE 107

to top

>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score =  111 bits (277), Expect = 2e-24
 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ +  KK+  EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG
Sbjct: 1   MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED---EKTRFESMKQ 547
           YK PHPL++KI++R+ T + ++P  A T AI DL  EL  L+   +    + T+    ++
Sbjct: 60  YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQSTDTER 119

Query: 548 GY 553
           GY
Sbjct: 120 GY 121

to top

>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score =  109 bits (272), Expect = 8e-24
 Identities = 55/106 (51%), Positives = 75/106 (70%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAP  +E F++ +  KK   EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG
Sbjct: 1   MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 514
           YK PHPL++KI++RI T + ++P  A T AI DL  EL  L+   +
Sbjct: 60  YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105

to top

>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC|
           2.7.7.6) (B13.6)
          Length = 120

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 47/108 (43%), Positives = 62/108 (57%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MNAPDR+E F++ EG  K+  + DTK  NA   T E+EDHT+GN++R +L  D  V FA 
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 520
           YK+ HP   +  +RI T     P  A   A N +  +L  LK  FE E
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108

to top

>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC|
           2.7.7.6)
          Length = 123

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 49/108 (45%), Positives = 63/108 (58%)
 Frame = +2

Query: 197 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 376
           MN P+RYE  +   G  KV++E D+K  NAA  T+E+EDHT+ N+L  QL  D  V FAG
Sbjct: 1   MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59

Query: 377 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 520
           YK+PHPL +  I+R+ T    SP Q    A   L   LE +K  F  E
Sbjct: 60  YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107

to top

>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 34/112 (30%), Positives = 61/112 (54%)
 Frame = +2

Query: 200 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 379
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP V FA Y
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66

Query: 380 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 535
           + PHPLQ  I + I     +   +  +  ++ +  ++  L++ F +   +++
Sbjct: 67  RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETFANRVQKYK 117

to top

>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 37/118 (31%), Positives = 63/118 (53%)
 Frame = +2

Query: 200 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 379
           N P+  +  V+  G KKV+     K  +   F I+ EDHTIGN++++QL +DP V FA Y
Sbjct: 8   NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66

Query: 380 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMKQGY 553
           + PHPLQ  I + I     +   +  +  +N++  ++  LK+ F  +  +++     Y
Sbjct: 67  RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENFAKKIQKYKESNSYY 123

to top

>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 34/112 (30%), Positives = 62/112 (55%)
 Frame = +2

Query: 200 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 379
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP V FA Y
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66

Query: 380 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 535
           + PHPLQ  I + I     +   +  +  ++ +  ++  L++ F ++  +++
Sbjct: 67  RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETFVNKVQKYK 117

to top

>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide|
           (EC 2.7.7.6)
          Length = 125

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 49/84 (58%)
 Frame = +2

Query: 278 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAY 457
           + + +F I++EDHT+GN LR  + ++P V F GY +PHP + K+  RI TA  ++     
Sbjct: 32  LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91

Query: 458 TQAINDLDKELENLKQAFEDEKTR 529
            + ++DL    + + + F ++  R
Sbjct: 92  RKGLDDLIDLCDAVTEKFTEQLPR 115

to top

>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide|
           (EC 2.7.7.6) (AC19)
          Length = 142

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +2

Query: 284 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQ 463
           +ASF I  EDHT+GN LR  + ++P+V F GY +PHP +  + +RI T  +++   A  +
Sbjct: 60  SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119

Query: 464 AINDL 478
            + DL
Sbjct: 120 GLKDL 124

to top

>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 114

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 26/89 (29%), Positives = 47/89 (52%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           +  +F +  EDHT+GN LR  + ++P V F GY + HP + KI  RI T +     + + 
Sbjct: 22  SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81

Query: 461 QAINDLDKELENLKQAFEDEKTRFESMKQ 547
           + +N+L    +++   FE     ++  K+
Sbjct: 82  RGLNELVDVCQHVLNTFETSIKEYKEQKE 110

to top

>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
 Frame = +2

Query: 236 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 406
           EG +K + E         +  +F +  EDHT+GN LR  + ++P V F GY   HP + K
Sbjct: 20  EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESK 79

Query: 407 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMK 544
           I +RI T       + + + +N+L    +++   FE     ++  K
Sbjct: 80  INLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQK 125

to top

>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 144

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 29/95 (30%), Positives = 49/95 (51%)
 Frame = +2

Query: 254 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 433
           SFE+D   +    +    EDHTIGN ++  L R   V F GY +PHPL+ KI+ R+ T  
Sbjct: 53  SFEQDPSNLTLIMY---EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109

Query: 434 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 538
             +  +   +A   +++    ++  FE+   + +S
Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFEESYEQSQS 144

to top

>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 112

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 26/86 (30%), Positives = 44/86 (51%)
 Frame = +2

Query: 290 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 469
           +F +  EDHT+GN LR  + +  +V F GY + HP + KI  RI T      ++     +
Sbjct: 24  TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGL 83

Query: 470 NDLDKELENLKQAFEDEKTRFESMKQ 547
           N+L    +++ Q FE     F+  ++
Sbjct: 84  NNLTDVCKHVLQTFEARMKEFKEQEE 109

to top

>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 93

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           N     I+ E+HT+GN+L+  L + P V FA Y  PHPL   II++I T    SP +A  
Sbjct: 11  NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70

Query: 461 QAI----NDLDKELENLK 502
           +AI     D +K +E +K
Sbjct: 71  KAIELAEEDTNKFIEEVK 88

to top

>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 145

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 33/95 (34%), Positives = 50/95 (52%)
 Frame = +2

Query: 254 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 433
           SFE+D   +   +  +  EDHTIGN ++  L R   V F GY +PHPL+ KI+ R+ T  
Sbjct: 54  SFEQDPSNL---TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110

Query: 434 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 538
                     A+  L K  E+++Q F   + +FE+
Sbjct: 111 G-------INALEVLVKAFESVEQVFSTIRGKFEA 138

to top

>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = +2

Query: 236 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 406
           EG +K + E            +F +  EDHT+GN LR  + ++P V F GY   HP + K
Sbjct: 20  EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESK 79

Query: 407 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE----DEKTRFESMKQ 547
           I +RI T       + + + +N+L    +++   FE    D K +  S K+
Sbjct: 80  INLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKKE 130

to top

>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 92

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           N     IE EDHT+GN++   L R   V FA Y  PHPL  KIIV+I T    +P  A  
Sbjct: 11  NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70

Query: 461 QAINDL 478
           +AI ++
Sbjct: 71  KAIENI 76

to top

>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 90

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 42/80 (52%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           N     I+ E+HTIGN+L+  L + P V FA Y LPHPL   I ++I T    S  +A  
Sbjct: 11  NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70

Query: 461 QAINDLDKELENLKQAFEDE 520
           +AI    +  EN    F DE
Sbjct: 71  KAI----ELAENYANLFIDE 86

to top

>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 105

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 42/85 (49%)
 Frame = +2

Query: 290 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 469
           +F    E HT+GN L+  + R P V F GY +PHP + K+  RI  + +        + +
Sbjct: 19  TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77

Query: 470 NDLDKELENLKQAFEDEKTRFESMK 544
            DL+   ++    FE E   F +MK
Sbjct: 78  EDLEGLCDHTIVTFEKEMAEFNAMK 102

to top

>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 454
           N   F +E EDHT  N+L   L  +P+V F  Y + HP+    K   R+ T  + +P +A
Sbjct: 11  NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70

Query: 455 YTQAINDLDKELENLKQAFE 514
             +A   + +  + + +A+E
Sbjct: 71  LEEAAKKIFERAKEVLEAWE 90

to top

>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 94

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 454
           N   F +E EDHT  N+L   LH + +V FAGY + HP+    K   ++ T  + +P +A
Sbjct: 11  NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70

Query: 455 YTQAINDLDKELENLKQAFE 514
             +A   +      + +A++
Sbjct: 71  LEEAAQKIFDRAREVLEAWK 90

to top

>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 293 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQA 466
           F +E EDHT  N+L   L  DP+V F  Y + HP+    K   R+ T  + +P +A  +A
Sbjct: 15  FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74

Query: 467 INDLDKELENLKQAFE 514
              +    + +  A+E
Sbjct: 75  ARKIFNRAKEVLDAWE 90

to top

>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +2

Query: 272 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP--LQYKIIVRIHTASQSSP 445
           K  +   F +E EDHT  N+L   L  +P+V F  Y + HP  +  K   R+ T  + +P
Sbjct: 8   KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITP 67

Query: 446 TQAYTQAINDLDKELENLKQAFE 514
            +A  +A   +    + +  A+E
Sbjct: 68  EKALEEAAKKIFDRAKEVLDAWE 90

to top

>RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 111

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +2

Query: 236 EGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKI 409
           E T + S    +K  N+ +  +   D+T+   L  ++ +D  V  A Y + HP+    +I
Sbjct: 4   ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQI 63

Query: 410 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 538
            VR+       P  A  +A+  L K  E+L   F+ E  R+ES
Sbjct: 64  YVRV---KSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 103

to top

>RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 92

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +2

Query: 308 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKE 487
           E +T+ + L   L  DP+V +  + + HPLQ     ++    + +P +A  +A+N +  +
Sbjct: 24  ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKL-KVKRGNPLEAIQRAVNAILSD 82

Query: 488 LENLKQAF 511
           LE L++ F
Sbjct: 83  LEELERGF 90

to top

>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 85

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           N      E E HT+ N+LR  L  D  V  A Y + HP+  +  + I   S     +A  
Sbjct: 9   NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68

Query: 461 QAINDLDKELENL 499
           + + D   E   L
Sbjct: 69  ETLRDRCDEFRRL 81

to top

>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 112

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = +2

Query: 308 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS--PTQAYTQAIND-- 475
           EDHT+ N+LR  L+R   +  A Y++ HP    I+ + H   +    P +   +A+++  
Sbjct: 25  EDHTLCNLLRWALNRQDGI-IATYRIEHP----ILGKEHKVDEERYVPPKMRIRAVDEDA 79

Query: 476 -----LDKELENLKQAFEDEKTRF 532
                L++ +E L +  E+ K  F
Sbjct: 80  DAREALERAIEELLELVEEAKEEF 103

to top

>RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 99

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKII--------VRIHTASQ 436
           N     +  EDH++ N+L+  L     V  A Y + HPL +           + I T   
Sbjct: 11  NLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEG 70

Query: 437 SSPTQAYTQAINDLDKELENLKQAFEDEK 523
           + P +   + + D+ K  + L    +++K
Sbjct: 71  TDPLEVLKEGLRDIIKMCDTLLDELKEKK 99

to top

>RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 96

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +2

Query: 281 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 460
           N      + E HT+ N L+   +    V  A Y + HPL+      I T        A  
Sbjct: 16  NLIKVQFKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALI 75

Query: 461 QAINDLDKELENLK 502
           QA+  L +EL N K
Sbjct: 76  QALKKLKEELLNFK 89

to top

>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 86

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 299 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQA 466
           I+ E HT  N+L+  L  D +V  A Y +PHPL  +  + I T S   P +A  +A
Sbjct: 17  IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRA 71

to top

>INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)|
          Length = 2126

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 256  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAA- 86
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 869  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 919

Query: 85   LLGESACSREGGDAGGNG 32
            LL ++A S   G+    G
Sbjct: 920  LLHDAADSTASGEEDDEG 937

to top

>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 15   PPSHGQPFPPASPPSLEQALSPS---NAAEQSIGRASTLPIGG 134
            PPSHG P P +   S E++L+P+   N  +++  R   LP GG
Sbjct: 954  PPSHGSPEPISHNNSFEKSLNPNDAENMEKKANKRLPKLPPGG 996

to top

>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1147

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 42  PASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRANKKEP 182
           P SP S    L P NA +   G  STLP+G   S SG  + + K+ P
Sbjct: 798 PTSPTSEAPPLPPRNAGKGPTGPPSTLPLGTQTS-SGSSTLSKKRPP 843

to top

>TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon cancer antigen|
           NY-CO-45) (Fragment)
          Length = 753

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
 Frame = -2

Query: 355 VPVQLHAEDVADGVVFTFNCERCS-IHDLCILL---EGHLLCALRH---DEALIAVRGIH 197
           V VQ   E VAD      NC  C  I D CI+    +GH   AL     ++ L++VR + 
Sbjct: 279 VEVQTAGEQVAD----RRNCIPCPYIGDPCIVRYREDGHYYRALITNICEDYLVSVRLVD 334

Query: 196 LQSTPGSFLFALLW-MPEQLQAPPIGNVDALPMDCSAALLGESACSREGGD 47
             +         LW +P +L + P+    A P   S   + E  CS+EG D
Sbjct: 335 FGNIEDCVDPKALWAIPSELLSVPM---QAFPCCLSGFNISEGLCSQEGND 382

to top

>DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase (EC 6.3.4.6);|
            Allophanate hydrolase (EC 3.5.1.54)]
          Length = 1835

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +2

Query: 203  APDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYK 382
            A DRY   +V  G  +++F    +I      ++ +++ TIG +   Q  R   + F GYK
Sbjct: 1441 AGDRY--VLVEYGDNEMNFNISYRI--ECLISLVKKNKTIGIVEMSQGVRSVLIEFDGYK 1496

Query: 383  LPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKT 526
            +      K++V   T  Q       T         +  L  AFED KT
Sbjct: 1497 VTQKELLKVLVAYETEIQFDENWKIT-------SNIIRLPMAFEDSKT 1537

to top

>RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 111

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +2

Query: 251 VSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKIIVRIH 424
           VS EKD+ I+   ++     D+T+   L  ++ +D  V  A Y + HP+    +I V++ 
Sbjct: 14  VSKEKDSIIVEMINY-----DNTLLRTLVEEILKDDQVIEARYYIKHPIIDNPQIYVKV- 67

Query: 425 TASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 538
                 P  A  ++I  L K  E+L    E E  ++ S
Sbjct: 68  --KSGKPQAAIKRSIRKLSKLYEDLGAQVEKEIEKYRS 103

to top

>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = -2

Query: 250 LLCALRHDEALIAVRGIHLQSTPGSFLFAL---LWMPEQLQAPPIGNVDALPMDCSAALL 80
           L C LR+       R +  Q        AL   L+ P+QLQ   I N+D   +  SA  +
Sbjct: 715 LCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFM 774

Query: 79  GESACSREGGDAGGNGCPWEGGXCW 5
                +    DA G   PWE    W
Sbjct: 775 SGVDMALFANDACGQPIPWEHCCPW 799

to top

>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2321

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 136  APPIGNVDALPMDCSAALLGESACSREGGDAGGNGCPWEGGXC 8
            AP +      P     A  G+  C RE       GC W+GG C
Sbjct: 1378 APEVSEEPRCPRAACQAKRGDQRCDRE---CNSPGCGWDGGDC 1417

to top

>THYX_PYRHO (O58498) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)|
          Length = 243

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 22/95 (23%), Positives = 48/95 (50%)
 Frame = +2

Query: 140 ELLRHPQ*SKQEGARC*LEMNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHT 319
           +L+RH   S  + ++  +++N  D  E FV+PE     S +KD++++      ++R    
Sbjct: 77  QLVRHRIASYTQQSQRYIKINPEDVEETFVIPE-----SIKKDSELLKEWKELLKRSLEL 131

Query: 320 IGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIH 424
               +   +H++     A + LP  ++ KI+V ++
Sbjct: 132 YEKSIERGIHQED----ARFILPQSVKTKIVVTMN 162

to top

>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 6   QQXPPSHGQPF-----PPASPPSLEQALSPSNAAEQSIGRASTL 122
           QQ PP  GQ       PPA  P  ++  SP++A +Q + +A  L
Sbjct: 210 QQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPVSQAQPL 253

to top

>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 15  PPSHGQPFPPASP-PSLEQA--LSPSNAAEQSI--GRASTLPIGGAWSCSGIHSRANKKE 179
           PP    P PP  P P+L Q   L PS  A   +     STLP       S + S+AN + 
Sbjct: 544 PPPQTPPLPPLPPIPALPQQPPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQP 603

Query: 180 P 182
           P
Sbjct: 604 P 604

to top

>INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)|
          Length = 2190

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -2

Query: 256  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAAL 83
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 863  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 913

Query: 82   L----GESACSREGGDAG 41
            L     + A S E  D G
Sbjct: 914  LLHDAVDDAASGEEDDEG 931

to top

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 6   QQXPPSHGQPF-----PPASPPSLEQALSPSNAAEQSIGRASTLPIG 131
           QQ PP  GQ       PPA  P  ++  SP+ A +QS  +A+ +  G
Sbjct: 480 QQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPMTQG 526

to top

>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
 Frame = +3

Query: 6   QQXPPSHGQPF-----PPASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRAN 170
           QQ PP  GQ       PPA  P  ++  SP+ A +QS  +A+ +  G      G  SR  
Sbjct: 482 QQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQG-----QGRQSRPV 536

Query: 171 KKEPGVDWR*MPLTAMSASSCLRAQRRCPSRRIQRS 278
              PG      P     AS   + Q   P    Q S
Sbjct: 537 AGGPGAP----PAARPPASPSPQRQAGAPQATRQAS 568

to top

>ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 991

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = -2

Query: 370 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 191
           KVNIW P +     V  GV++           L I+L G L+  +R      A   I L 
Sbjct: 68  KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEMRKGNQCQAEEVIALV 117

Query: 190 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 53
           S PG F               + +V+ +P+ C      +  C  EG
Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150

to top

>TSGA_SALTY (Q8ZLK7) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 462 WVYACVGEDWLAVWILT 412
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

to top

>TSGA_SALTI (Q8Z1Z8) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 462 WVYACVGEDWLAVWILT 412
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

to top

>TSGA_SALPA (Q5PLW2) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 462 WVYACVGEDWLAVWILT 412
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

to top

>TSGA_SALCH (Q57J00) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 462 WVYACVGEDWLAVWILT 412
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180

to top

>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor|
            (Glycoprotein 340) (Gp-340) (Surfactant
            pulmonary-associated D-binding protein)
          Length = 2413

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 251  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 102
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1441 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1495

Query: 101  GLLGGVAGRE-----RLLKGGRRC 45
                  AG E     RL+ GG RC
Sbjct: 1496 -SRASTAGSESTLALRLVNGGDRC 1518


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,529,855
Number of Sequences: 219361
Number of extensions: 2113328
Number of successful extensions: 8744
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 7665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8684
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result