ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal9a21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full ... 198 1e-47
2gb|AY109357.1| Zea mays CL881_1 mRNA sequence 52 0.002
3ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa851... 48 0.025
4dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
5dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
6gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome... 46 0.10
7ref|XM_483106.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
9dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
10ref|XM_450222.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
11gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and... 42 1.6
12ref|XM_532218.2| PREDICTED: Canis familiaris synaptosomal-associ... 42 1.6
13ref|XM_862657.1| PREDICTED: Canis familiaris synaptosomal-associ... 42 1.6
14ref|XM_845999.1| PREDICTED: Canis familiaris similar to Alpha-fe... 42 1.6
15ref|XM_546849.2| PREDICTED: Canis familiaris similar to Alpha-fe... 42 1.6
16emb|BX511262.7| Human DNA sequence from clone DASS-336N12 on chr... 42 1.6
17emb|BX248305.13| Human DNA sequence from clone DASS-82G15 on chr... 42 1.6
18emb|AL805934.3| Human DNA sequence from clone DAQB-195H10 on chr... 42 1.6
19emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on ch... 42 1.6
20emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chr... 42 1.6
21emb|CR759761.9| Human DNA sequence from clone DAMC-157M7 on chro... 42 1.6
22emb|CR753892.5| Human DNA sequence from clone DADB-70P7 on chrom... 42 1.6
23dbj|AB017437.1| Gallus gallus mRNA for avena, complete cds 42 1.6
24gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex B... 42 1.6
25emb|CR352886.1| Gallus gallus finished cDNA, clone ChEST388i12 42 1.6
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 42 1.6
29ref|NM_001008974.1| Pan troglodytes deformed epidermal autoregul... 42 1.6
30ref|NM_204300.1| Gallus gallus enabled homolog (Drosophila) (ENA... 42 1.6
31dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 1.6
32dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
33dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
34gb|AF049461.1|AF049461 Pan troglodytes nuclear DEAF-1 related tr... 42 1.6
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
36emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
37dbj|AB057641.1| Gallus gallus mRNA for avEna neural variant, com... 42 1.6
38dbj|AB035523.1| Gallus gallus mRNA for avenaIII, complete cds 42 1.6
39dbj|AB035522.1| Gallus gallus mRNA for avenaII, complete cds 42 1.6
40gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete... 40 6.2
41gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence 40 6.2
42ref|XM_630658.1| Dictyostelium discoideum hypothetical protein (... 40 6.2
43ref|NM_015409.3| Homo sapiens E1A binding protein p400 (EP400), ... 40 6.2
44gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
45gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
46gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 40 6.2
47ref|XM_415846.1| PREDICTED: Gallus gallus similar to nuclear pro... 40 6.2
48gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome ... 40 6.2
49gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, com... 40 6.2
50gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete ... 40 6.2
51gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence 40 6.2
52emb|AL355333.18| Human DNA sequence from clone RP11-575N15 on ch... 40 6.2
53emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22... 40 6.2
54dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 40 6.2
55dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, c... 40 6.2
56gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.2
57gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell ... 40 6.2
58gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Canc... 40 6.2
59gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, compl... 40 6.2
60ref|NM_139648.1| Drosophila melanogaster CG15022-RA (CG15022), mRNA 40 6.2
61dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 6.2
62gb|AY095075.1| Drosophila melanogaster RE24507 full insert cDNA 40 6.2
63gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygro... 40 6.2
64gb|AY044869.1| Homo sapiens p400 SWI2/SNF2-related protein mRNA,... 40 6.2
65dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
66dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
67dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
68gb|AC137590.2| Homo sapiens 12 BAC RP13-820C6 (Roswell Park Canc... 40 6.2
69gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, comple... 40 6.2
70gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y... 40 6.2
71dbj|AP006343.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
72gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15... 40 6.2
73gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 6.2
74gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
75gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced... 40 6.2
76dbj|AB056762.1| Macaca fascicularis brain cDNA clone:QccE-21503,... 40 6.2 
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA
           sequence
          Length = 2815

 Score =  198 bits (100), Expect = 1e-47
 Identities = 118/124 (95%)
 Strand = Plus / Plus

                                                                       
Query: 338 aagaggggaaatcctatacagcttgttaccaatcatttcaaagtttcgttgaagacaaca 397
           |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 1   aagaggggaaatcctatacagcttgtgacaaatcatttcaaagtctcgttgaagacgaca 60

                                                                       
Query: 398 gatgagttcttccaccattactatgtaaatctgaagtatgaagatgacaggcctgttgat 457
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacgagttcttccatcattactatgtaaatctgaagtatgaagatgacaggcctgttgat 120

               
Query: 458 ggaa 461
           ||||
Sbjct: 121 ggaa 124
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>gb|AY109357.1| Zea mays CL881_1 mRNA sequence
          Length = 3158

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 411 accattactatgtaaatctgaagtatgaagatga 444
           ||||||||||||| ||| ||||||||||||||||
Sbjct: 343 accattactatgtcaatttgaagtatgaagatga 376
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>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA
          Length = 2715

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 374 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 433
           ||||| |||||  ||||| || |||| || || ||||| || |||||||| |||||||||
Sbjct: 175 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 234

                                       
Query: 434 tatgaagatgacaggcctgttgatggaa 461
           ||||| ||||| || || || |||||||
Sbjct: 235 tatgaggatgatagaccagtggatggaa 262
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>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full
           insert sequence
          Length = 3027

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 374 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 433
           ||||| |||||  ||||| || |||| || || ||||| || |||||||| |||||||||
Sbjct: 323 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 382

                                       
Query: 434 tatgaagatgacaggcctgttgatggaa 461
           ||||| ||||| || || || |||||||
Sbjct: 383 tatgaggatgatagaccagtggatggaa 410
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>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full
           insert sequence
          Length = 3047

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 374 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 433
           ||||| |||||  ||||| || |||| || || ||||| || |||||||| |||||||||
Sbjct: 335 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 394

                                       
Query: 434 tatgaagatgacaggcctgttgatggaa 461
           ||||| ||||| || || || |||||||
Sbjct: 395 tatgaggatgatagaccagtggatggaa 422
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>gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome 17, complete sequence
          Length = 214723

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 276    ctgaagaagcaaagaagatatca 298
              |||||||||||||||||||||||
Sbjct: 190153 ctgaagaagcaaagaagatatca 190131
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>ref|XM_483106.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 180 tgccaccgccaccacctctcccacca 205
           |||||||||||||||||| |||||||
Sbjct: 891 tgccaccgccaccacctcccccacca 916
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 180      tgccaccgccaccacctctcccacca 205
                |||||||||||||||||| |||||||
Sbjct: 24314063 tgccaccgccaccacctcccccacca 24314088
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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0686H11
          Length = 135273

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 180   tgccaccgccaccacctctcccacca 205
             |||||||||||||||||| |||||||
Sbjct: 54367 tgccaccgccaccacctcccccacca 54392
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>ref|XM_450222.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 207

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 416 tactatgtaaatctgaagtatgaagatga 444
           ||||| || ||||||||||||||||||||
Sbjct: 157 tactacgtcaatctgaagtatgaagatga 185
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>gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and CLIC1, DDAH, G6b, G6c, G5b,
              G6d, G6e, G6f, BAT5, G5b, CSK2B, BAT4, G4, Apo M, BAT3,
              BAT2, AIF-1, 1C7, LST-1, LTB, TNF, and LTA genes, complete
              cds
          Length = 184666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gccaccgccaccacctctccc 201
              |||||||||||||||||||||
Sbjct: 129151 gccaccgccaccacctctccc 129171
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>ref|XM_532218.2| PREDICTED: Canis familiaris synaptosomal-associated protein, 91kDa,
            transcript variant 1 (SNAP91), mRNA
          Length = 4165

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 181  gccaccgccaccacctctcccacca 205
            |||||||||||||||||| ||||||
Sbjct: 1654 gccaccgccaccacctctgccacca 1678
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>ref|XM_862657.1| PREDICTED: Canis familiaris synaptosomal-associated protein, 91kDa,
            transcript variant 3 (SNAP91), mRNA
          Length = 4073

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 181  gccaccgccaccacctctcccacca 205
            |||||||||||||||||| ||||||
Sbjct: 1646 gccaccgccaccacctctgccacca 1670
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>ref|XM_845999.1| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer
            binding protein (AT motif-binding factor) (AT-binding
            transcription factor 1), transcript variant 2
            (LOC489729), mRNA
          Length = 11346

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 181  gccaccgccaccacctctcccacca 205
            ||||||||||||||||| |||||||
Sbjct: 6138 gccaccgccaccacctcccccacca 6162
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>ref|XM_546849.2| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer
            binding protein (AT motif-binding factor) (AT-binding
            transcription factor 1), transcript variant 1
            (LOC489729), mRNA
          Length = 11373

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 181  gccaccgccaccacctctcccacca 205
            ||||||||||||||||| |||||||
Sbjct: 6165 gccaccgccaccacctcccccacca 6189
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>emb|BX511262.7| Human DNA sequence from clone DASS-336N12 on chromosome 6, complete
           sequence
          Length = 69009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 181 gccaccgccaccacctctccc 201
           |||||||||||||||||||||
Sbjct: 472 gccaccgccaccacctctccc 452
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>emb|BX248305.13| Human DNA sequence from clone DASS-82G15 on chromosome 6 Contains the
             UQCRHP1 pseudogene for ubiquinol-cytochrome c reductase
             hinge protein pseudogene 1, AIF1 gene for allograft
             inflammatory factor 1, the 5' end of the BAT2 gene for
             HLA-B associated transcript 2, and 1 CpG island, complete
             sequence
          Length = 16685

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gccaccgccaccacctctccc 201
             |||||||||||||||||||||
Sbjct: 15157 gccaccgccaccacctctccc 15137
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>emb|AL805934.3| Human DNA sequence from clone DAQB-195H10 on chromosome 6 Contains
            the AIF1 gene for allograft inflammatory factor 1, the
            BAT2 genes for HLA-B associated transcript 2, the BAT3
            gene for HLA-B associated transcript 3, the APOM gene for
            apolipoprotein M, the C6orf47 gene for chromosome 6 open
            reading frame 47, the BAT4 gene for HLA-B associated
            transcript 4, the CSNK2B gene for casein kinase 2, beta
            polypeptide, the LY6G5B gene for lymphocyte antigen 6
            complex, locus G5B, the bQB195H10.12 gene for a novel
            protein, the LY6G5C gene for lymphocyte antigen 6
            complex, locus G5C, the BAT5 gene for HLA-B associated
            transcript 5, the 5' end for LY6G6D gene for lymphocyte
            antigen 6 complex, locus G6D and 7 CpG islands, complete
            sequence
          Length = 99109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 9397 gccaccgccaccacctctccc 9377
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>emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on chromosome 6 contains a
             ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene
             for HLA-B associated transcript 1, the ATP6V1G gene for
             ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G,
             the NFKBIL1 gene for nuclear factor of kappa light
             polypeptide gene enhancer in B-cells inhibitor-like 1, the
             LTA gene for lymphotoxin alpha, the TNF gene for tumour
             necrosis factor, the LTB gene for lymphotoxin beta, the
             LST1 gene for leukocyte specific transcript 1, the LY117
             gene for lymphocyte antigen 117, the AIF1 gene for
             alograft imflammatory factor 1, the BAT2 gene for HLA-B
             associated transcript 2, the BAT3 gene for HLA-B
             associated transcript 3, the APOM gene for apolipoprotein
             M, the 3' end of the gene for chromosome 6, open reading
             frame 47 and four CpG islands, complete sequence
          Length = 132330

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gccaccgccaccacctctccc 201
             |||||||||||||||||||||
Sbjct: 93592 gccaccgccaccacctctccc 93572
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>emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chromosome 6 contains the
              gene for a novel protein similar to similar to
              peptidyl-prolyl cis-trans isomerase A (PPIase), a ribosomal
              protein L15 (RPL15) pseudogene, the BAT1 gene for HLA-B
              associated transcript 1, the ATP6V1G gene for ATPase, H+
              transporting, lysosomal 13kDa, V1 subunit G, the NFKBIL1
              gene for nuclear factor of kappa light polypeptide gene
              enhancer in B-cells inhibitor-like 1, the LTA gene for
              lymphotoxin alpha, the TNF gene for tumour necrosis factor,
              the LTB gene for lymphotoxin beta, the LST1 gene for
              leukocyte specific transcript 1, the LY117 gene for
              lymphocyte antigen 117, the AIF1 gene for  alograft
              imflammatory factor 1, the BAT2 gene for HLA-B associated
              transcript 2, the 3' end of the BAT3 gene for HLA-B
              associated transcript 3 and two CpG islands, complete
              sequence
          Length = 135784

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    gccaccgccaccacctctccc 201
              |||||||||||||||||||||
Sbjct: 107359 gccaccgccaccacctctccc 107339
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>emb|CR759761.9| Human DNA sequence from clone DAMC-157M7 on chromosome 6, complete
            sequence
          Length = 83849

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 9389 gccaccgccaccacctctccc 9369
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>emb|CR753892.5| Human DNA sequence from clone DADB-70P7 on chromosome 6, complete
             sequence
          Length = 101422

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gccaccgccaccacctctccc 201
             |||||||||||||||||||||
Sbjct: 77804 gccaccgccaccacctctccc 77784
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>dbj|AB017437.1| Gallus gallus mRNA for avena, complete cds
          Length = 2265

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 1231 gccaccgccaccacctctccc 1251
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>gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex BAC MMU218K02, complete
             sequence
          Length = 182826

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gccaccgccaccacctctccc 201
             |||||||||||||||||||||
Sbjct: 55968 gccaccgccaccacctctccc 55948
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>emb|CR352886.1| Gallus gallus finished cDNA, clone ChEST388i12
          Length = 917

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 tatgtaaatctgaagtatgaa 439
           |||||||||||||||||||||
Sbjct: 394 tatgtaaatctgaagtatgaa 414
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 416      tactatgtaaatctgaagtatgaagatga 444
                ||||| || ||||||||||||||||||||
Sbjct: 12179403 tactaggttaatctgaagtatgaagatga 12179375
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 416     tactatgtaaatctgaagtatgaagatga 444
               ||||| || ||||||||||||||||||||
Sbjct: 3225106 tactacgtcaatctgaagtatgaagatga 3225134



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 182      ccaccgccaccacctctcccacca 205
                |||||||||||||||||| |||||
Sbjct: 21837283 ccaccgccaccacctctctcacca 21837306
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   gccaccgccaccacctctccc 201
             |||||||||||||||||||||
Sbjct: 22103 gccaccgccaccacctctccc 22123
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>ref|NM_001008974.1| Pan troglodytes deformed epidermal autoregulatory factor 1 (DEAF1),
           mRNA
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 gccgcggccgccacccctgccgcct 268
           ||||||||||||||| |||||||||
Sbjct: 463 gccgcggccgccaccgctgccgcct 439
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>ref|NM_204300.1| Gallus gallus enabled homolog (Drosophila) (ENAH), mRNA
          Length = 3297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 1707 gccaccgccaccacctctccc 1727
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gccaccgccaccacctctccc 201
              |||||||||||||||||||||
Sbjct: 323103 gccaccgccaccacctctccc 323123
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>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0011D16
          Length = 177329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 416    tactatgtaaatctgaagtatgaagatga 444
              ||||| || ||||||||||||||||||||
Sbjct: 101419 tactacgtcaatctgaagtatgaagatga 101447
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>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0038I09
          Length = 153520

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 416    tactatgtaaatctgaagtatgaagatga 444
              ||||| || ||||||||||||||||||||
Sbjct: 134769 tactacgtcaatctgaagtatgaagatga 134797
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>gb|AF049461.1|AF049461 Pan troglodytes nuclear DEAF-1 related transcriptional regulator
           protein mRNA, complete cds
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 gccgcggccgccacccctgccgcct 268
           ||||||||||||||| |||||||||
Sbjct: 463 gccgcggccgccaccgctgccgcct 439
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 416      tactatgtaaatctgaagtatgaagatga 444
                ||||| || ||||||||||||||||||||
Sbjct: 12133773 tactaggttaatctgaagtatgaagatga 12133745
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>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159296

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 416    tactatgtaaatctgaagtatgaagatga 444
              ||||| || ||||||||||||||||||||
Sbjct: 117914 tactaggttaatctgaagtatgaagatga 117942
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>dbj|AB057641.1| Gallus gallus mRNA for avEna neural variant, complete cds
          Length = 3297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 1707 gccaccgccaccacctctccc 1727
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>dbj|AB035523.1| Gallus gallus mRNA for avenaIII, complete cds
          Length = 1853

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 gccaccgccaccacctctccc 201
           |||||||||||||||||||||
Sbjct: 765 gccaccgccaccacctctccc 785
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>dbj|AB035522.1| Gallus gallus mRNA for avenaII, complete cds
          Length = 2135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gccaccgccaccacctctccc 201
            |||||||||||||||||||||
Sbjct: 1120 gccaccgccaccacctctccc 1140
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>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence
          Length = 157286

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    cctgccaccgccaccacctc 197
              ||||||||||||||||||||
Sbjct: 103211 cctgccaccgccaccacctc 103192
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>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence
          Length = 161716

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 16035 cctgccaccgccaccacctc 16054
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>ref|XM_630658.1| Dictyostelium discoideum hypothetical protein (DDB0188901), partial
            mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  cattactatgtaaatctgaa 432
            ||||||||||||||||||||
Sbjct: 1333 cattactatgtaaatctgaa 1314
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>ref|NM_015409.3| Homo sapiens E1A binding protein p400 (EP400), mRNA
          Length = 12265

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tgccgcggccgccacccctg 262
            ||||||||||||||||||||
Sbjct: 5538 tgccgcggccgccacccctg 5557
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>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01,
              complete sequence
          Length = 182504

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 417    actatgtaaatctgaagtatgaagatga 444
              ||||||| ||||||||||||| ||||||
Sbjct: 150736 actatgtcaatctgaagtatggagatga 150709
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>gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018P20 map near S6115, complete sequence
          Length = 139249

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 417   actatgtaaatctgaagtatgaagatga 444
             ||||||| ||||||||||||| ||||||
Sbjct: 77844 actatgtcaatctgaagtatggagatga 77871
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>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
              OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 413    cattactatgtaaatctgaagtatgaagatga 444
              ||||||||| | ||||||||||||||| ||||
Sbjct: 109509 cattactatattaatctgaagtatgaaaatga 109478
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>ref|XM_415846.1| PREDICTED: Gallus gallus similar to nuclear protein p30 (LOC417601),
            mRNA
          Length = 2021

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  aagacaacagatgagttctt 408
            ||||||||||||||||||||
Sbjct: 1771 aagacaacagatgagttctt 1752
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>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0035B22, complete sequence
          Length = 155788

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   ccaccgccaccacctctcccacca 205
             |||||||||||||||||| |||||
Sbjct: 42717 ccaccgccaccacctctctcacca 42740
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>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttgaagacaacagatgagtt 405
             ||||||||||||||||||||
Sbjct: 69614 ttgaagacaacagatgagtt 69595
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>gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete sequence
          Length = 99370

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 98684 cctgccaccgccaccacctc 98665
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>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence
          Length = 167732

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 68465 cctgccaccgccaccacctc 68484
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>emb|AL355333.18| Human DNA sequence from clone RP11-575N15 on chromosome 10, complete
              sequence
          Length = 180545

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    aagaagcaaagaagatatca 298
              ||||||||||||||||||||
Sbjct: 150356 aagaagcaaagaagatatca 150337
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>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete
             sequence
          Length = 194523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 50271 cctgccaccgccaccacctc 50290
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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttgaagacaacagatgagtt 405
             ||||||||||||||||||||
Sbjct: 18723 ttgaagacaacagatgagtt 18704
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>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences
          Length = 204391

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   ttgaagacaacagatgagtt 405
             ||||||||||||||||||||
Sbjct: 51279 ttgaagacaacagatgagtt 51298
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 386      ttgaagacaacagatgagtt 405
                ||||||||||||||||||||
Sbjct: 20940274 ttgaagacaacagatgagtt 20940293
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>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 32994 cctgccaccgccaccacctc 32975
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>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 199523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    tgaagtatgaagatgacagg 448
              ||||||||||||||||||||
Sbjct: 139876 tgaagtatgaagatgacagg 139857
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>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence
          Length = 200450

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   tgaagaagcaaagaagatat 296
             ||||||||||||||||||||
Sbjct: 36900 tgaagaagcaaagaagatat 36881
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>ref|NM_139648.1| Drosophila melanogaster CG15022-RA (CG15022), mRNA
          Length = 1060

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 cctgccaccgccaccacctc 197
           ||||||||||||||||||||
Sbjct: 402 cctgccaccgccaccacctc 421
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    ctgaagaagcaaagaagata 295
              ||||||||||||||||||||
Sbjct: 480818 ctgaagaagcaaagaagata 480837
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>gb|AY095075.1| Drosophila melanogaster RE24507 full insert cDNA
          Length = 1075

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 cctgccaccgccaccacctc 197
           ||||||||||||||||||||
Sbjct: 402 cctgccaccgccaccacctc 421
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>gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygromycin A biosynthetic
             gene cluster, complete sequence
          Length = 39151

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ttgagggtgatgacctgcca 184
             ||||||||||||||||||||
Sbjct: 35825 ttgagggtgatgacctgcca 35844
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>gb|AY044869.1| Homo sapiens p400 SWI2/SNF2-related protein mRNA, complete cds
          Length = 10017

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tgccgcggccgccacccctg 262
            ||||||||||||||||||||
Sbjct: 5468 tgccgcggccgccacccctg 5487
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 417      actatgtaaatctgaagtatgaagatga 444
                ||||||| ||||||||||||| ||||||
Sbjct: 12017218 actatgtcaatctgaagtatggagatga 12017245
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 413      cattactatgtaaatctgaagtatgaagatga 444
                ||||||||| | ||||||||||||||| ||||
Sbjct: 11787944 cattactatattaatctgaagtatgaaaatga 11787975
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 413      cattactatgtaaatctgaagtatgaagatga 444
                ||||||||| | ||||||||||||||| ||||
Sbjct: 10492693 cattactatattaatctgaagtatgaaaatga 10492662
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>gb|AC137590.2| Homo sapiens 12 BAC RP13-820C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128729

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   tgccgcggccgccacccctg 262
             ||||||||||||||||||||
Sbjct: 63221 tgccgcggccgccacccctg 63202
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>gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, complete sequence
          Length = 187268

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cggccaagccttcttcctcc 86
             ||||||||||||||||||||
Sbjct: 40806 cggccaagccttcttcctcc 40825
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>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttgaagacaacagatgagtt 405
             ||||||||||||||||||||
Sbjct: 63250 ttgaagacaacagatgagtt 63231
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>dbj|AP006343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1032F05
          Length = 151412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 413   cattactatgtaaatctgaagtatgaagatga 444
             ||||||||| | ||||||||||||||| ||||
Sbjct: 20244 cattactatattaatctgaagtatgaaaatga 20275
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>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete
              sequence
          Length = 315988

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    cctgccaccgccaccacctc 197
              ||||||||||||||||||||
Sbjct: 149414 cctgccaccgccaccacctc 149395
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     ttttggcaagaggggaaatc 350
               ||||||||||||||||||||
Sbjct: 1685394 ttttggcaagaggggaaatc 1685413
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 417      actatgtaaatctgaagtatgaagatga 444
                ||||||| ||||||||||||| ||||||
Sbjct: 12095141 actatgtcaatctgaagtatggagatga 12095168
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>gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced LIM-kinase1 (LIMK1) gene,
             complete cds
          Length = 65608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctgccaccgccaccacctc 197
             ||||||||||||||||||||
Sbjct: 10865 cctgccaccgccaccacctc 10884
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>dbj|AB056762.1| Macaca fascicularis brain cDNA clone:QccE-21503, full insert
           sequence
          Length = 3257

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 243 tgccgcggccgccacccctg 262
           ||||||||||||||||||||
Sbjct: 787 tgccgcggccgccacccctg 806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,699,927
Number of Sequences: 3902068
Number of extensions: 3699927
Number of successful extensions: 79736
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79298
Number of HSP's gapped (non-prelim): 438
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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