ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal8l12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLX2_HUMAN (Q07687) Homeobox protein DLX-2 30 5.9
2PPOE_LYCES (Q08307) Polyphenol oxidase E, chloroplast precursor ... 29 7.8

>DLX2_HUMAN (Q07687) Homeobox protein DLX-2|
          Length = 328

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 263 TEVTMWFHARICQFPNRD*YIGALGSRPRPSESATTRCPSAPVAAGHVW 409
           T+V +WF  R  +F  +    G + S   P  SA+  C S PV+A   W
Sbjct: 194 TQVKIWFQNRRSKF-KKMWKSGEIPSEQHPGASASPPCASPPVSAPASW 241



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>PPOE_LYCES (Q08307) Polyphenol oxidase E, chloroplast precursor (EC 1.10.3.1)|
           (PPO) (Catechol oxidase)
          Length = 587

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +2

Query: 242 PSMFSMLTEVTMWFHARICQFPNRD*YIGA---LGSRPRPSESATTRCPSAPVAAGHVW 409
           P +  M   +T+ +   +   P    + GA   LGS P P +      P  PV   H+W
Sbjct: 279 PQLQIMTNNLTLMYRQMVTNAPCPSQFFGAAYPLGSEPSPGQGTIENIPHTPV---HIW 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,095,007
Number of Sequences: 219361
Number of extensions: 1501763
Number of successful extensions: 3435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3433
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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