| Clone Name | baal9a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197931.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0056G17.7), mRNA Length = 1251 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Plus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 598 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 657 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 658 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 717 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 718 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 763
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Minus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 127451 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 127392 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 127391 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 127332 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 127331 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 127286
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Minus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 22672782 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22672723 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 22672722 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22672663 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 22672662 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 22672617
>dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F07, full insert sequence Length = 1281 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Plus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 643 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 702 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 703 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 762 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 763 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 808
>dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141G14, full insert sequence Length = 1357 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Plus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 665 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 724 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 725 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 784 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 785 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 830
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 131 bits (66), Expect = 8e-28 Identities = 141/166 (84%) Strand = Plus / Minus Query: 19 gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78 |||| |||||||| || ||||||||| || |||||||||| |||||||||||||||| | Sbjct: 22685250 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22685191 Query: 79 gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138 |||| ||||| | ||||| |||||||||||| |||| ||||| || ||||| ||||||| Sbjct: 22685190 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22685131 Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184 |||| |||||||||||||| || ||| || ||||||| ||| |||| Sbjct: 22685130 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 22685085
>gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone MGC:80422 IMAGE:5155242), complete cds Length = 2443 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ctgctgacacccccagctggt 65 ||||||||||||||||||||| Sbjct: 1564 ctgctgacacccccagctggt 1544
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tgcctcttgtcgcaaagctg 47 |||||||||||||||||||| Sbjct: 4654188 tgcctcttgtcgcaaagctg 4654169
>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete sequence Length = 206103 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 ccctaccaacaaaagtagt 169 ||||||||||||||||||| Sbjct: 166296 ccctaccaacaaaagtagt 166314
>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete sequence Length = 166804 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 ccctaccaacaaaagtagt 169 ||||||||||||||||||| Sbjct: 54802 ccctaccaacaaaagtagt 54820
>gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, complete sequence Length = 211878 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 aagctgctgacacccccag 60 ||||||||||||||||||| Sbjct: 115953 aagctgctgacacccccag 115971
>emb|AL356472.17| Human DNA sequence from clone RP11-344B24 on chromosome 9 Contains the 5' end of the BAG1 gene for BCL2-associated athanogene, a novel gene (HSPC177), the 5' end of the NFX1 gene for nuclear transcription factor, X-box binding 1 and 2 CpG islands, complete sequence Length = 98593 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 ccctcctgcgattgttgct 98 ||||||||||||||||||| Sbjct: 32583 ccctcctgcgattgttgct 32601
>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete sequence Length = 183714 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 ccctaccaacaaaagtagt 169 ||||||||||||||||||| Sbjct: 122641 ccctaccaacaaaagtagt 122659
>dbj|AK048205.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130040G20 product:mcf.2 transforming sequence-like, full insert sequence Length = 3762 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 aagctgctgacacccccag 60 ||||||||||||||||||| Sbjct: 2764 aagctgctgacacccccag 2782 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,008,068 Number of Sequences: 3902068 Number of extensions: 1008068 Number of successful extensions: 65850 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65795 Number of HSP's gapped (non-prelim): 55 length of query: 185 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 163 effective length of database: 17,147,199,772 effective search space: 2794993562836 effective search space used: 2794993562836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)