ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal9a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197931.1| Oryza sativa (japonica cultivar-group) unknown ... 131 8e-28
2gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 131 8e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 131 8e-28
4dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
5dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 131 8e-28
7gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone... 42 0.58
8gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 2.3
9gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chrom... 38 9.1
10gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chrom... 38 9.1
11gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, comple... 38 9.1
12emb|AL356472.17| Human DNA sequence from clone RP11-344B24 on ch... 38 9.1
13gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromo... 38 9.1
14dbj|AK048205.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 38 9.1

>ref|NM_197931.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0056G17.7), mRNA
          Length = 1251

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Plus

                                                                       
Query: 19  gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
           |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 598 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 657

                                                                       
Query: 79  gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
           |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 658 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 717

                                                         
Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
           |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 718 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 763



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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
              sequence
          Length = 139999

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                          
Query: 19     gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
              |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 127451 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 127392

                                                                          
Query: 79     gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
              |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 127391 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 127332

                                                            
Query: 139    ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
              |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 127331 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 127286



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                            
Query: 19       gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
                |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 22672782 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22672723

                                                                            
Query: 79       gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
                |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 22672722 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22672663

                                                              
Query: 139      ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
                |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 22672662 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 22672617



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>dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F07, full
           insert sequence
          Length = 1281

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Plus

                                                                       
Query: 19  gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
           |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 643 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 702

                                                                       
Query: 79  gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
           |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 703 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 762

                                                         
Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
           |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 763 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 808



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>dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141G14, full
           insert sequence
          Length = 1357

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Plus

                                                                       
Query: 19  gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
           |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 665 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 724

                                                                       
Query: 79  gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
           |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 725 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 784

                                                         
Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
           |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 785 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 830



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  131 bits (66), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                            
Query: 19       gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
                |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 22685250 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22685191

                                                                            
Query: 79       gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
                |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 22685190 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22685131

                                                              
Query: 139      ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgct 184
                |||| |||||||||||||| || ||| || ||||||| ||| ||||
Sbjct: 22685130 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgct 22685085



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>gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone MGC:80422
            IMAGE:5155242), complete cds
          Length = 2443

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 45   ctgctgacacccccagctggt 65
            |||||||||||||||||||||
Sbjct: 1564 ctgctgacacccccagctggt 1544



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      tgcctcttgtcgcaaagctg 47
               ||||||||||||||||||||
Sbjct: 4654188 tgcctcttgtcgcaaagctg 4654169



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>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete
              sequence
          Length = 206103

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 151    ccctaccaacaaaagtagt 169
              |||||||||||||||||||
Sbjct: 166296 ccctaccaacaaaagtagt 166314



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>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete
             sequence
          Length = 166804

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 151   ccctaccaacaaaagtagt 169
             |||||||||||||||||||
Sbjct: 54802 ccctaccaacaaaagtagt 54820



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>gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, complete sequence
          Length = 211878

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     aagctgctgacacccccag 60
              |||||||||||||||||||
Sbjct: 115953 aagctgctgacacccccag 115971



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>emb|AL356472.17| Human DNA sequence from clone RP11-344B24 on chromosome 9 Contains the
             5' end of the BAG1 gene for BCL2-associated athanogene, a
             novel gene (HSPC177), the 5' end of the NFX1 gene for
             nuclear transcription factor, X-box binding 1 and 2 CpG
             islands, complete sequence
          Length = 98593

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    ccctcctgcgattgttgct 98
             |||||||||||||||||||
Sbjct: 32583 ccctcctgcgattgttgct 32601



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>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete
              sequence
          Length = 183714

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 151    ccctaccaacaaaagtagt 169
              |||||||||||||||||||
Sbjct: 122641 ccctaccaacaaaagtagt 122659



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>dbj|AK048205.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130040G20 product:mcf.2 transforming
            sequence-like, full insert sequence
          Length = 3762

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 42   aagctgctgacacccccag 60
            |||||||||||||||||||
Sbjct: 2764 aagctgctgacacccccag 2782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,008,068
Number of Sequences: 3902068
Number of extensions: 1008068
Number of successful extensions: 65850
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65795
Number of HSP's gapped (non-prelim): 55
length of query: 185
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 163
effective length of database: 17,147,199,772
effective search space: 2794993562836
effective search space used: 2794993562836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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