>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
 Frame = +2

Query: 173 FLSLLVVASMPIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTVFTPSLIFANLAK 352
           F  L  +    ++QV++I + G + AS  S +    +++ ++ +   +FTP LIF+ LAK
Sbjct: 7   FAHLAYLVFESVLQVVIIALAGFWSAS--SGLLPKQSQKIISLLNVDLFTPCLIFSKLAK 64

Query: 353 TVTLSDVISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNL--- 523
           +++++ +     +P+   +T  +    G +  +IL   +     ++A    GN  +L   
Sbjct: 65  SLSMAKIFEIAIIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVS 124

Query: 524 ----LLIVVPAVC-DEDGNPFGNDRSQCRSRGLSYFVV 622
               L   +P +  D+  N   ++R    SRG+ Y ++
Sbjct: 125 LTLSLAYTLPNLTWDQIPN---DNRDNVASRGILYLLI 159

>YNJ5_YEAST (P53932) Hypothetical 71.2 kDa protein in RPS7B-YPT53 intergenic|
           region
          Length = 642

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
 Frame = +2

Query: 191 VASMPIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTVFTPSLIFANLAKTVTLSD 370
           V+  PI+++ LI  +G  +A     + T  A R ++ +V TV  PSL F  +   +   D
Sbjct: 12  VSVKPIIKIYLIIGVGFLMAK--MGILTVEATRIISDIVLTVLLPSLSFNKIVANIEDKD 69

Query: 371 VISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNLLLIVVPAV- 547
           + S   + ++  + F  G    ++    L  P+ + G I+A     N+ +L +  + ++ 
Sbjct: 70  IKSVGIICLSALLIFGSGFFFAYVVRLFLPVPKQWYGGILAGGMFPNISDLPIAYLQSMD 129

Query: 548 -----CDEDGN 565
                 +E+GN
Sbjct: 130 QGLVFSEEEGN 140

>SSUC_ECOLI (P75851) Putative aliphatic sulfonates transport permease protein|
           ssuC
          Length = 263

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +2

Query: 383 WFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNL 523
           WF+PV I   + + S++GWL+ +IL  P+   G++ AF +    G L
Sbjct: 15  WFLPVGIVAVWQLASSVGWLSTRILPSPE---GVVTAFWTLSASGEL 58

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 280 AGGENLAVTRGEEGSDDADEQDLDDGHGCHH-EQRQEAHLPGPDAGSRLFLRP 125
           A  E  A TR  EGS+DA  +D D G      EQ+ E   PGP+  S    RP
Sbjct: 292 AAAEEAAGTREPEGSEDAAGEDGDQGRPQEETEQQAERQEPGPETQSEEEERP 344

>ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1-like protein|
          Length = 406

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 328 RWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHHEQRQE 173
           R GED +N       G   EN     G EGS  +D+QD + G G   EQ+QE
Sbjct: 39  RGGEDEENTRSKPEYGTEAENNV---GTEGSVPSDDQDREGGGGHEPEQQQE 87

>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7|
           (TBP-associated factor 7) (TBP-associated factor 67 kDa)
           (TAFII-67)
          Length = 590

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 310 KNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHHEQ 182
           K   +H  A A G+  A   GEEG ++ +E+DLD G     E+
Sbjct: 343 KKEEIHTIASAVGKQGAEEEGEEGMEEEEEEDLDLGAAFESEE 385

>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug|
           resistance protein homolog) (P-glycoprotein)
          Length = 1336

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +2

Query: 176 LSLLVVASMPIVQVLLIGVIGAFLASGYSK 265
           L+L+V+AS PI+ +L++G I +FL+S Y K
Sbjct: 253 LTLVVLASYPII-ILVVGFINSFLSSAYEK 281

>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I|
          Length = 452

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
 Frame = +2

Query: 167 MGFLSLLVVASM-----PIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTV----F 319
           MGF S L   ++     PI++  L  ++ A    GY         RD  KV+ ++    F
Sbjct: 1   MGFFSSLGQINVWSLLRPIIESDLEVIVIAL--GGYVLAKKGFLPRDAQKVISSLNVYFF 58

Query: 320 TPSLIFANLAKTVTLSDVISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFC 499
           TP L+F  +   + L  +I    +PV   I       + +L  K+ +     R    A  
Sbjct: 59  TPCLVFEKVGNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACI 118

Query: 500 SAGNLGNLLLIVVPAV 547
           +  N  +L L +V ++
Sbjct: 119 TFQNSNSLPLALVSSL 134

>LSPA_STRCO (Q9S2X7) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 204

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = +2

Query: 248 ASGYSKVFTASARRDMNKVVFTVFTPSLI--FANLAKTVTLSDVISWWFMPVNIAITFLV 421
           A G+ + FT         ++FTV   ++I   A LA+ +          +P  IA+  L+
Sbjct: 97  AFGFGEAFT---------IIFTVIAAAVIVVIARLARKLHS--------LPWAIALGLLL 139

Query: 422 GSALGWLACKILKPPQHFRGLIMAFCSAGNLGNLLLIVVPAVC 550
           G ALG L  +I + P  F G ++ F +  +     L     VC
Sbjct: 140 GGALGNLTDRIFRAPGVFEGAVVDFIAPKHFAVFNLADSAIVC 182

>HAT2_ARATH (P46601) Homeobox-leucine zipper protein HAT2 (HD-ZIP protein 2)|
          Length = 283

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   TPPSSLLLCPAAHSSGDRASEDVCENHH*HHR 101
           TPP++L++CP+    G  +S     NHH +HR
Sbjct: 229 TPPTTLIMCPSCERVGGPSS----SNHHHNHR 256

>HME2B_XENLA (P52730) Homeobox protein engrailed-2-B (En-2B) (EN2 MABEN)|
          Length = 265

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 322 GEDCKNNLVHVPAGAGGENLAVT-RGEEGSDDADEQDLDDGHGCHHEQRQEAHLPGPDAG 146
           G +  ++ V+VP GAGG +  +T  GE+ SD A E+ L    G + +    +      A 
Sbjct: 77  GAESGHHRVNVPEGAGGSSKVITVTGEKKSDLAMEETL-KSRGLNGDHSLSSDSDSSQAS 135

Query: 145 SRLFLRPLL 119
           S+   +P+L
Sbjct: 136 SKATQKPIL 144

>ALL3_AEDAE (O01949) 30 kDa salivary gland allergen Aed a 3 precursor|
          Length = 253

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = -3

Query: 379 GDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEE--GSDDADEQDL-- 212
           GD+    D  G+ GE+E  GE+   +       AGGE+   T  EE  G +DA E+D   
Sbjct: 33  GDEETTDDAGGDGGEEENEGEEHAGD-----EDAGGED---TGKEENTGHEDAGEEDAGE 84

Query: 211 -DDGHGCHHEQRQEAHLPGPDAGS 143
            D G     ++  E    G DAGS
Sbjct: 85  EDAGEEDAEKEEGEKEDAGDDAGS 108

>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 379 GDDVGQR-DRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDG 203
           G+D G   +  G+ GEDE  GED          G  GE+     G+EG D+ +++  D+G
Sbjct: 543 GEDEGDEGEDEGDEGEDE--GED---------EGDEGEDEGEDEGDEGEDEGEDEG-DEG 590

Query: 202 HGCHHEQRQEAHLPGPDAG 146
                ++  E    G D G
Sbjct: 591 EDEGEDEGDEGEDEGEDEG 609



 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 388 EPPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENL-AVTRGEEGSDDADEQD 215
           E  G+D G     G+ GEDE   ED + +        G E       G+EG D+ DE D
Sbjct: 446 EDEGEDEGDEGDEGDEGEDEGEDEDDEEDEGEDEGDEGDEGEDEGDEGDEGEDEGDEGD 504



 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = -3

Query: 379 GDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGH 200
           G+D G+ +  G+ GEDE   E  +        G  GE+     G+EG +  DE D  +  
Sbjct: 568 GEDEGEDE--GDEGEDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGDEGEDEGDEGEDE 625

Query: 199 GCHHEQRQEAHLPGPDAG 146
           G   E   +    G D G
Sbjct: 626 GDEGEDEGD---EGEDEG 640

>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 385 PPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDD 206
           PPG + G++   GE G+  + G+D +N    +P   G        GE G D    Q  D 
Sbjct: 280 PPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYP---GEPGRDGEKGQKGDT 336

Query: 205 G 203
           G
Sbjct: 337 G 337

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 373 DVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEG 239
           D+G R + GE G+D   GE  +N L       G   LA ++GE G
Sbjct: 578 DIGPRGKAGERGKDGERGERGENGL------PGPSGLAASKGERG 616

>TRMU_LISIN (Q92BK1) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 370 VGQRDRLGEVGEDERW---GEDCKNNLVHVPAGAGGENL 263
           +GQR  LG  G+ E W   G+D KNN++ V  G   ++L
Sbjct: 241 IGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSL 279

>CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 938

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 346 EVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHH 188
           EV  DE W E+             GE+L+ + G++  D  +++D DDG    H
Sbjct: 579 EVDSDEEWEEE-----------EPGESLSHSEGDDDDDMGEDEDEDDGFFVPH 620

>ASTN_MOUSE (Q61137) Astrotactin-1 precursor (Neuronal migration protein GC14)|
          Length = 1302

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 176  RSPSSRP*CRITSLPQTPAD 117
            R PSS P C +TS P+TPA+
Sbjct: 946  RCPSSCPLCHVTSSPETPAE 965

>AGUA_SELRU (Q5KR05) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 371

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 637 PRAMDNDEVGEAARSALAPIVPKRVAIFVADSRDDDQQQVAE 512
           PR + NDE  E   +  A + P  V +   D +DD Q ++++
Sbjct: 209 PRGIHNDETNEHVDNVFAFVRPGEVLLAWTDDKDDPQYELSQ 250

>RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (RGP3)|
          Length = 1198

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 259  VTRGEEGSDDADEQDLDDGHGCHHEQRQEAHL-PGPDAGSRLFLR 128
            V  GEEG +D DE   DD +G   E ++ + +  G  A   L LR
Sbjct: 888  VEEGEEGEEDEDEDTSDDNYGERSEAKRSSMIETGQGAEGGLSLR 932

>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 346 EVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHH 188
           EV  D+ W E+             GE+L+ + G+E  D  +++D DDG    H
Sbjct: 576 EVDSDDEWEEE-----------EPGESLSHSEGDEDDDVGEDEDEDDGFFVPH 617

>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
 Frame = -3

Query: 397  HRHEPPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTR---------GE 245
            H      DDV   D +G+ GED+  G+D   +LV    GAG  +LA T          G+
Sbjct: 2123 HVENRADDDVD--DDMGDEGEDDE-GDDEDADLVE--DGAGVMSLAGTDVEDPEDTGLGD 2177

Query: 244  EGSDDADEQDLDDGH 200
            E +DD  ++D DD H
Sbjct: 2178 EYNDDMVDEDDDDFH 2192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,854,172
Number of Sequences: 219361
Number of extensions: 2117240
Number of successful extensions: 7601
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7574
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)