>ZF260_RAT (Q62981) Zinc finger protein 260 (Zfp-260) (POZF-1) (Pancreas-only|
           zinc finger protein 1)
          Length = 407

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
 Frame = +1

Query: 256 FERERCLAILSADSQHLFREYSSTPGSHKDP---------SFVAKETEHLRSRSVTESDP 408
           +E + C    S + QH F E+  T G  K P         S  +  T HLRSRS  ES  
Sbjct: 23  YECDECRKTFSLE-QH-FVEHKKTHGGEKSPECTGCGEEFSKASSLTRHLRSRSRRESYK 80

Query: 409 CG 414
           CG
Sbjct: 81  CG 82

>ISA1_YEAST (Q07821) Iron sulfur assembly protein 1|
          Length = 250

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = -3

Query: 272 HRSLSKGADWRQGQKGHFHSLTTL*KCYQHDGIDETKPRVLESPQSESRAKR*DPMKF-R 96
           HR LS G  WR G  G           ++   I +T P   +S   +S+     P KF  
Sbjct: 15  HRFLSTGGFWRGGTNGTMSRTINNVNPFKLKFIPKTVPAAADSVSPDSQRPGKKPFKFIV 74

Query: 95  DLSIKINSYKQVPDWKQNAPPGR 27
               K +   + P W   A P R
Sbjct: 75  SNQSKSSKASKSPKWSSYAFPSR 97

>CF182_RAT (Q6AXZ4) Protein C6orf182 homolog|
          Length = 430

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 283 LSADSQHLFREYSSTPGSHKDPSFVAKETEHLRSRSVTESDPCG-LELHQD 432
           ++ + + L R+ + T GSH D   + +E EHL  +  ++ D    L+ HQD
Sbjct: 310 MNMEHRELLRQIAQT-GSHSDSEELEQELEHLARKMESKEDQISKLQKHQD 359

>GLR22_ARATH (Q9SHV1) Glutamate receptor 2.2 precursor (Ligand-gated ion channel|
           2.2)
          Length = 920

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 256 RGLIGDKGKRVIFTVSPPCENAINMTGSTRRSRGFWNHLNRSPEQKDKTR*SLGT 92
           +GL GD    V   + P     +NM G+  RS GFW   N   ++ D+   S+GT
Sbjct: 368 KGLAGDF-HFVSGQLQPSVFEIVNMIGTGERSIGFWTEGNGLVKKLDQEPRSIGT 421

>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -1

Query: 358  RRTTDPYVNLGLKNTPGRGAESPRKGSPDIALSRRGLIGDKGKRVIFTVSPPCEN-AINM 182
            R++   Y N G   +P +  +  R+ SPD      G   ++  R++  V  P E+ +++ 
Sbjct: 820  RKSKKRYRNEG-SPSPRQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSP 878

Query: 181  TGSTRRSRGFWNHLNRSPEQKDKTR 107
            +  T   +G W   +R PE+K+ +R
Sbjct: 879  SHLTEDRQGRWKEEDRKPERKESSR 903

>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 210

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +3

Query: 48  FPVRDLFVGIYFYG*VPKLHRVLS------FCSGLRLR*FQNPRLRLVDPVMLIAFSQGG 209
           F   DL V I  +  VPK H +LS           +LR  Q PR++L DPV      + G
Sbjct: 130 FQESDLIVNITHHELVPK-HILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRG 188

Query: 210 ETVKM 224
           E VK+
Sbjct: 189 EVVKI 193

>FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 precursor (FGF|
           receptor-like protein 1)
          Length = 529

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 204 GGETVKMTLLPLSPISPLRERAMSGDPFRGLSAPLPGVFFNPRFT*GSVVRR 359
           G  +V  TL+ +  ISP +E    G    G   P+   +  PRFT  S +RR
Sbjct: 102 GSLSVNYTLIIMDDISPGKENPGPGGSSGGQEDPVSQQWARPRFTQPSKMRR 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,272,298
Number of Sequences: 219361
Number of extensions: 1667982
Number of successful extensions: 3729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3727
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)