>FAF1_RAT (Q924K2) FAS-associated factor 1 (Protein FAF1)|
          Length = 649

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
 Frame = +2

Query: 20  FLAEFEHEFGAGRGPRFVAE---GFSDALQRAQREYKLLFVYLHSPDHPDTPAFCGGCLC 190
           F AEF   +G      F+      F +A     R+ KLL +YLH  +   T  FC   LC
Sbjct: 336 FTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLC 395

Query: 191 SEPVAAFIDENFVAWGGSIRRTEGFKMSNSLNASRF-PFCALVMASTNQRIVLLQQVE-- 361
           +E + +++ +NF+ W         + ++   N +RF   C     S   + +  Q+ +  
Sbjct: 396 AESIVSYLSQNFITW--------AWDLTKDANRARFLTMCNRHFGSVIAQTIRTQKTDQF 447

Query: 362 -------GPKSPEEMITILQ--RVVEECTASLVAA 439
                  G +S  E++ ++Q    V+E    L+AA
Sbjct: 448 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 482

>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (Protein FAF1) (hFAF1)|
          Length = 650

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
 Frame = +2

Query: 20  FLAEFEHEFGAGRGPRFVAE---GFSDALQRAQREYKLLFVYLHSPDHPDTPAFCGGCLC 190
           F AEF   +G      F+      F +A     R+ KLL +YLH  +   T  FC   LC
Sbjct: 337 FTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLC 396

Query: 191 SEPVAAFIDENFVAWGGSI----RRTEGFKMSN------------SLNASRFPFCALVMA 322
           +E + +++ +NF+ W   +     R     M N            +    +FP   ++M 
Sbjct: 397 AESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMG 456

Query: 323 STNQRIVLLQQVEGPKSPEEMITILQRVVEECTA 424
             +   V L  ++G  + +E++  L   +E  TA
Sbjct: 457 KRSSNEV-LNVIQGNTTVDELMMRLMAAMEIFTA 489

>FAF1_MOUSE (P54731) FAS-associated factor 1 (Protein FAF1)|
          Length = 649

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
 Frame = +2

Query: 20  FLAEFEHEFGAGRGPRFVAE---GFSDALQRAQREYKLLFVYLHSPDHPDTPAFCGGCLC 190
           F AEF   +       ++      F +A     R+ KLL +YLH  +   T  FC   LC
Sbjct: 336 FTAEFSSRYSDCHPVFYIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLC 395

Query: 191 SEPVAAFIDENFVAWGGSIRRTEGFKMSNSLNASRF-PFCALVMASTNQRIVLLQQVE-- 361
           +E + +++ +NF+ W         + ++   N +RF   C     S   + +  Q+ +  
Sbjct: 396 AESIVSYLSQNFITW--------AWDLTKDTNRARFLTMCNRHFGSVIAQTIRTQKTDQF 447

Query: 362 -------GPKSPEEMITILQ--RVVEECTASLVAA 439
                  G +S  E++ ++Q    V+E    L+AA
Sbjct: 448 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 482

>UBX3_YEAST (Q12229) UBX domain-containing protein 3|
          Length = 455

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 83  FSDALQRAQREYKLLFVYLHSPDHPDTPAFCGGCLCSEPVAAFIDE-NFVAWGGSIRRTE 259
           +++ L     + K   +YLH P   +   +    LCSE     I +   + W G +  +E
Sbjct: 169 YTELLDACSEQVKFGVIYLHDPLLDNHMDYVNKILCSEAFVNMIRKYQVLLWYGDVTTSE 228

Query: 260 GFKMSNSLNASRFPFCALVMASTNQRIVLLQQVEG 364
           G ++SN+L   ++P   ++     ++I L+ +VEG
Sbjct: 229 GLQVSNALKIRQYPLLGIISLKAEKKIELIARVEG 263

>DNAJ_LEIXX (Q6AEC0) Chaperone protein dnaJ|
          Length = 369

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = +2

Query: 17  GFLAEFEHEFGAG---RGPRFVAEGFSDALQRAQREYKLLFVYLHSPDHPDTPAFCGGC- 184
           GF   FE  FG G   RGPR   E   DAL R + +   +    H     DT   C  C 
Sbjct: 81  GFGDIFETFFGGGGASRGPRSRRERGQDALLRVEVDLDEVVFGAHRDLEVDTAIVCETCD 140

Query: 185 -LCSEPVAAFIDENFVAWGGSIRRTEGFKMSNSLNASRFPFC 307
             C +P  A +  +     GSI+R+    + N + +S    C
Sbjct: 141 GSCCQPGTAPVPCDICHGTGSIQRSVRSLLGNVMTSSPCGSC 182

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/67 (29%), Positives = 25/67 (37%)
 Frame = -1

Query: 206 RPPARSRGSHRRMPXXXXXXXXXGTRREACTXXXXXXARQKIPQRRSAGHGQPQTRARTR 27
           RP +RSR   R              RR          +R   P+RR +   +P  R RT 
Sbjct: 273 RPRSRSRSKSRSRTRSRSPSHTRPRRRHR------SRSRSYSPRRRPSPRRRPSPRRRTP 326

Query: 26  PGSQPPP 6
           P   PPP
Sbjct: 327 PRRMPPP 333

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = -3

Query: 231 ATKFSSMKAATGS-----EQRQPPQNAGVSGWSGEWRYTKRSLYSRCARCSASENPSATK 67
           ATK SS + A        ++R+P     ++ WS      ++ L S   RC +S +P   +
Sbjct: 44  ATKASSRREAEEMKLEPLQEREPAPEENLT-WSSSGG-DEKVLPSIPLRCHSSSSPVCPR 101

Query: 66  RGPRPAPNSCSNSARKPTAXA 4
           R PRP P   + S  +P   A
Sbjct: 102 RKPRPRPQPRARSRSQPGLSA 122

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/67 (29%), Positives = 25/67 (37%)
 Frame = -1

Query: 206 RPPARSRGSHRRMPXXXXXXXXXGTRREACTXXXXXXARQKIPQRRSAGHGQPQTRARTR 27
           RP +RSR   R              RR          +R   P+RR +   +P  R RT 
Sbjct: 275 RPRSRSRSKSRSRTRSRSPSHTRPRRRHR------SRSRSYSPRRRPSPRRRPSPRRRTP 328

Query: 26  PGSQPPP 6
           P   PPP
Sbjct: 329 PRRMPPP 335

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/67 (29%), Positives = 25/67 (37%)
 Frame = -1

Query: 206 RPPARSRGSHRRMPXXXXXXXXXGTRREACTXXXXXXARQKIPQRRSAGHGQPQTRARTR 27
           RP +RSR   R              RR          +R   P+RR +   +P  R RT 
Sbjct: 275 RPRSRSRSKSRSRTRSRSPSHTRPRRRHR------SRSRSYSPRRRPSPRRRPSPRRRTP 328

Query: 26  PGSQPPP 6
           P   PPP
Sbjct: 329 PRRMPPP 335

>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 83  IPQRRSAGHGQPQTRARTRPGSQPPP 6
           +P R   G G P+  AR  P +QPPP
Sbjct: 40  LPHRSRGGGGGPRGGARASPATQPPP 65

>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 83  IPQRRSAGHGQPQTRARTRPGSQPPP 6
           +P R   G G P+  AR  P +QPPP
Sbjct: 40  LPHRPRGGGGGPRGGARASPATQPPP 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,049,322
Number of Sequences: 219361
Number of extensions: 1421242
Number of successful extensions: 4792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4767
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)