| Clone Name | baal8k05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192058.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6474 Score = 789 bits (398), Expect = 0.0 Identities = 584/646 (90%) Strand = Plus / Plus Query: 8 agatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgctccact 67 |||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||||| | Sbjct: 3630 agatgtagctgttgcttgcttacttggcgcagaagaatttggtttcagtactgctccgtt 3689 Query: 68 gatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 gatcacacttggttgcatcatgatgcggaaatgtcataccaacacttgccctgttggtat 3749 Query: 128 agctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaa 187 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct: 3750 agctactcaagatccagtgctacgagaaaagtttgctggagaaccagagcatgttatcaa 3809 Query: 188 ttttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcctccgtac 247 || |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 3810 cttcttcttcatgcttgctgaggagctaagagaaatcatgtctcagcttggcttccgtac 3869 Query: 248 aattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagtgaagag 307 |||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct: 3870 cattactgaaatggttgggcgctctgacatgcttgaggttgatccagaagtagtgaagag 3929 Query: 308 caatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaagattcg 367 ||| |||||||||||||| |||||||||||| |||| || | |||||||||| ||||||| Sbjct: 3930 caacgagaaacttgagaacattgatctctcattgattttgaaaccagctgcagagattcg 3989 Query: 368 tcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttgga 427 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || || Sbjct: 3990 ccctggggctgctcagtactgtgttgaaaagcaagatcatggtcttgacatggcattaga 4049 Query: 428 taacaaactcatagctttatcaacggccgcgcttgaaaaggaagttcgtgttttcatcga 487 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || Sbjct: 4050 taacaaactcatagctttatcaaaagctgcacttgagaaggaagttcgtgttttcattga 4109 Query: 488 gactccaatcaagaacactaatcgggcagttggcactacccttagccatgaagtcacaaa 547 |||||||||| |||| ||||| || ||||| ||||||| ||||| |||||||||||||| Sbjct: 4110 gactccaatccagaatactaaccgagcagtaggcactatgcttagtcatgaagtcacaaa 4169 Query: 548 acgttatcacatgaagggattagatcctggaaccattcatgtgaaactcactggaagtgc 607 ||||||||||||||||||||| | | || || ||||||||||| |||||||||||||| Sbjct: 4170 gcgttatcacatgaagggattacctgcaggtacgattcatgtgaagctcactggaagtgc 4229 Query: 608 tggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 4230 tggtcaaagtcttggcgcttttctctgtcctggaatcacccttgag 4275
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 789 bits (398), Expect = 0.0 Identities = 584/646 (90%) Strand = Plus / Minus Query: 8 agatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgctccact 67 |||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||||| | Sbjct: 28088749 agatgtagctgttgcttgcttacttggcgcagaagaatttggtttcagtactgctccgtt 28088690 Query: 68 gatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 28088689 gatcacacttggttgcatcatgatgcggaaatgtcataccaacacttgccctgttggtat 28088630 Query: 128 agctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaa 187 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct: 28088629 agctactcaagatccagtgctacgagaaaagtttgctggagaaccagagcatgttatcaa 28088570 Query: 188 ttttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcctccgtac 247 || |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 28088569 cttcttcttcatgcttgctgaggagctaagagaaatcatgtctcagcttggcttccgtac 28088510 Query: 248 aattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagtgaagag 307 |||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct: 28088509 cattactgaaatggttgggcgctctgacatgcttgaggttgatccagaagtagtgaagag 28088450 Query: 308 caatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaagattcg 367 ||| |||||||||||||| |||||||||||| |||| || | |||||||||| ||||||| Sbjct: 28088449 caacgagaaacttgagaacattgatctctcattgattttgaaaccagctgcagagattcg 28088390 Query: 368 tcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttgga 427 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || || Sbjct: 28088389 ccctggggctgctcagtactgtgttgaaaagcaagatcatggtcttgacatggcattaga 28088330 Query: 428 taacaaactcatagctttatcaacggccgcgcttgaaaaggaagttcgtgttttcatcga 487 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || Sbjct: 28088329 taacaaactcatagctttatcaaaagctgcacttgagaaggaagttcgtgttttcattga 28088270 Query: 488 gactccaatcaagaacactaatcgggcagttggcactacccttagccatgaagtcacaaa 547 |||||||||| |||| ||||| || ||||| ||||||| ||||| |||||||||||||| Sbjct: 28088269 gactccaatccagaatactaaccgagcagtaggcactatgcttagtcatgaagtcacaaa 28088210 Query: 548 acgttatcacatgaagggattagatcctggaaccattcatgtgaaactcactggaagtgc 607 ||||||||||||||||||||| | | || || ||||||||||| |||||||||||||| Sbjct: 28088209 gcgttatcacatgaagggattacctgcaggtacgattcatgtgaagctcactggaagtgc 28088150 Query: 608 tggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 28088149 tggtcaaagtcttggcgcttttctctgtcctggaatcacccttgag 28088104 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 tcagtactgtgttgaaaagca 400 ||||||||||||||||||||| Sbjct: 25903033 tcagtactgtgttgaaaagca 25903013
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 789 bits (398), Expect = 0.0 Identities = 584/646 (90%) Strand = Plus / Minus Query: 8 agatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgctccact 67 |||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||||| | Sbjct: 103948 agatgtagctgttgcttgcttacttggcgcagaagaatttggtttcagtactgctccgtt 103889 Query: 68 gatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 103888 gatcacacttggttgcatcatgatgcggaaatgtcataccaacacttgccctgttggtat 103829 Query: 128 agctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaa 187 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct: 103828 agctactcaagatccagtgctacgagaaaagtttgctggagaaccagagcatgttatcaa 103769 Query: 188 ttttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcctccgtac 247 || |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 103768 cttcttcttcatgcttgctgaggagctaagagaaatcatgtctcagcttggcttccgtac 103709 Query: 248 aattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagtgaagag 307 |||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct: 103708 cattactgaaatggttgggcgctctgacatgcttgaggttgatccagaagtagtgaagag 103649 Query: 308 caatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaagattcg 367 ||| |||||||||||||| |||||||||||| |||| || | |||||||||| ||||||| Sbjct: 103648 caacgagaaacttgagaacattgatctctcattgattttgaaaccagctgcagagattcg 103589 Query: 368 tcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttgga 427 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || || Sbjct: 103588 ccctggggctgctcagtactgtgttgaaaagcaagatcatggtcttgacatggcattaga 103529 Query: 428 taacaaactcatagctttatcaacggccgcgcttgaaaaggaagttcgtgttttcatcga 487 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || Sbjct: 103528 taacaaactcatagctttatcaaaagctgcacttgagaaggaagttcgtgttttcattga 103469 Query: 488 gactccaatcaagaacactaatcgggcagttggcactacccttagccatgaagtcacaaa 547 |||||||||| |||| ||||| || ||||| ||||||| ||||| |||||||||||||| Sbjct: 103468 gactccaatccagaatactaaccgagcagtaggcactatgcttagtcatgaagtcacaaa 103409 Query: 548 acgttatcacatgaagggattagatcctggaaccattcatgtgaaactcactggaagtgc 607 ||||||||||||||||||||| | | || || ||||||||||| |||||||||||||| Sbjct: 103408 gcgttatcacatgaagggattacctgcaggtacgattcatgtgaagctcactggaagtgc 103349 Query: 608 tggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 103348 tggtcaaagtcttggcgcttttctctgtcctggaatcacccttgag 103303
>dbj|AB008845.1| Oryza sativa mRNA for NADH dependent Glutamate Synthase, complete cds Length = 7037 Score = 789 bits (398), Expect = 0.0 Identities = 584/646 (90%) Strand = Plus / Plus Query: 8 agatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgctccact 67 |||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||||| | Sbjct: 3918 agatgtagctgttgcttgcttacttggcgcagaagaatttggtttcagtactgctccgtt 3977 Query: 68 gatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3978 gatcacacttggttgcatcatgatgcggaaatgtcataccaacacttgccctgttggtat 4037 Query: 128 agctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaa 187 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct: 4038 agctactcaagatccagtgctacgagaaaagtttgctggagaaccagagcatgttatcaa 4097 Query: 188 ttttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcctccgtac 247 || |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 4098 cttcttcttcatgcttgctgaggagctaagagaaatcatgtctcagcttggcttccgtac 4157 Query: 248 aattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagtgaagag 307 |||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct: 4158 cattactgaaatggttgggcgctctgacatgcttgaggttgatccagaagtagtgaagag 4217 Query: 308 caatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaagattcg 367 ||| |||||||||||||| |||||||||||| |||| || | |||||||||| ||||||| Sbjct: 4218 caacgagaaacttgagaacattgatctctcattgattttgaaaccagctgcagagattcg 4277 Query: 368 tcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttgga 427 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || || Sbjct: 4278 ccctggggctgctcagtactgtgttgaaaagcaagatcatggtcttgacatggcattaga 4337 Query: 428 taacaaactcatagctttatcaacggccgcgcttgaaaaggaagttcgtgttttcatcga 487 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || Sbjct: 4338 taacaaactcatagctttatcaaaagctgcacttgagaaggaagttcgtgttttcattga 4397 Query: 488 gactccaatcaagaacactaatcgggcagttggcactacccttagccatgaagtcacaaa 547 |||||||||| |||| ||||| || ||||| ||||||| ||||| |||||||||||||| Sbjct: 4398 gactccaatccagaatactaaccgagcagtaggcactatgcttagtcatgaagtcacaaa 4457 Query: 548 acgttatcacatgaagggattagatcctggaaccattcatgtgaaactcactggaagtgc 607 ||||||||||||||||||||| | | || || ||||||||||| |||||||||||||| Sbjct: 4458 gcgttatcacatgaagggattacctgcaggtacgattcatgtgaagctcactggaagtgc 4517 Query: 608 tggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 4518 tggtcaaagtcttggcgcttttctctgtcctggaatcacccttgag 4563
>dbj|AB001916.1| Oryza sativa gene for NADH-dependent glutamate synthase Length = 17070 Score = 789 bits (398), Expect = 0.0 Identities = 584/646 (90%) Strand = Plus / Plus Query: 8 agatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgctccact 67 |||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||||| | Sbjct: 10286 agatgtagctgttgcttgcttacttggcgcagaagaatttggtttcagtactgctccgtt 10345 Query: 68 gatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 10346 gatcacacttggttgcatcatgatgcggaaatgtcataccaacacttgccctgttggtat 10405 Query: 128 agctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaa 187 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct: 10406 agctactcaagatccagtgctacgagaaaagtttgctggagaaccagagcatgttatcaa 10465 Query: 188 ttttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcctccgtac 247 || |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 10466 cttcttcttcatgcttgctgaggagctaagagaaatcatgtctcagcttggcttccgtac 10525 Query: 248 aattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagtgaagag 307 |||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct: 10526 cattactgaaatggttgggcgctctgacatgcttgaggttgatccagaagtagtgaagag 10585 Query: 308 caatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaagattcg 367 ||| |||||||||||||| |||||||||||| |||| || | |||||||||| ||||||| Sbjct: 10586 caacgagaaacttgagaacattgatctctcattgattttgaaaccagctgcagagattcg 10645 Query: 368 tcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttgga 427 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || || Sbjct: 10646 ccctggggctgctcagtactgtgttgaaaagcaagatcatggtcttgacatggcattaga 10705 Query: 428 taacaaactcatagctttatcaacggccgcgcttgaaaaggaagttcgtgttttcatcga 487 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || Sbjct: 10706 taacaaactcatagctttatcaaaagctgcacttgagaaggaagttcgtgttttcattga 10765 Query: 488 gactccaatcaagaacactaatcgggcagttggcactacccttagccatgaagtcacaaa 547 |||||||||| |||| ||||| || ||||| ||||||| ||||| |||||||||||||| Sbjct: 10766 gactccaatccagaatactaaccgagcagtaggcactatgcttagtcatgaagtcacaaa 10825 Query: 548 acgttatcacatgaagggattagatcctggaaccattcatgtgaaactcactggaagtgc 607 ||||||||||||||||||||| | | || || ||||||||||| |||||||||||||| Sbjct: 10826 gcgttatcacatgaagggattacctgcaggtacgattcatgtgaagctcactggaagtgc 10885 Query: 608 tggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 10886 tggtcaaagtcttggcgcttttctctgtcctggaatcacccttgag 10931
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 339 bits (171), Expect = 7e-90 Identities = 464/559 (83%), Gaps = 2/559 (0%) Strand = Plus / Plus Query: 2 tggtagagatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgc 61 |||||||||||||||||| || || |||||||| ||||| |||||||| |||||||| || Sbjct: 6055 tggtagagatgttgctgttgcttgtttacttggagcagaagaatttggattcagcacagc 6114 Query: 62 tccactgatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgt 121 ||| | |||||||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct: 6115 gccattaatcacacttggctgcattatgatgaggaagtgccataccaacacttgccctgc 6174 Query: 122 tggtatagctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgt 181 |||||| ||||| ||||||||||||||||| | ||| |||||||| | ||||| ||||| Sbjct: 6175 tggtattgctacacaagatccagtgctccgcgcaaagtttgctgggaagccagaacatgt 6234 Query: 182 cattaattttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcct 241 ||| || | ||||||||||||||||| ||| || ||||||| ||||| ||||||||| | Sbjct: 6235 cataaactacttcttcatgcttgctgaagaggtacgagaaatcatggcacagcttggctt 6294 Query: 242 ccgtacaattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagt 301 ||| || |||||||||||||||| || || || |||||||| | ||||| ||||| | Sbjct: 6295 ccgcactgttaatgaaatggttgggcgatcggacatgcttgagatcgatcccaaagtact 6354 Query: 302 gaagagcaatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaa 361 | || |||| ||||||||||| || ||||||||||||| | | | | ||||||||| | Sbjct: 6355 ggagggcaacgagaaacttgaaaacattgatctctcacggctgctgaaaccagctgctga 6414 Query: 362 gattcgtcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggc 421 ||| | |||||||||| ||| || |||||||| |||||||| |||||||| ||| |||| Sbjct: 6415 aattagccctggggctgttcaatattgtgttgagaagcaagatcatggcctcgacatggc 6474 Query: 422 tttggataacaaactcatagctttatcaacggccgcgctt-gaaaaggaagttcgtgttt 480 || ||||||||||||||||| | ||||| || || ||| ||||||| |||||||||| Sbjct: 6475 attagataacaaactcatagcctcctcaacagctgcccttcgaaaagg-tgttcgtgttt 6533 Query: 481 tcatcgagactccaatcaagaacactaatcgggcagttggcactacccttagccatgaag 540 |||| ||||| ||| | ||||| ||| || || ||||| |||| || |||||||||| Sbjct: 6534 tcattgagacaccagtacggaacattaaccgagctgttggtactatgctcagccatgaag 6593 Query: 541 tcacaaaacgttatcacat 559 |||||||||| |||||||| Sbjct: 6594 tcacaaaacggtatcacat 6612 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 599 tggaagtgctggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||||||||| || ||| |||||||||||||||||||||| || || |||||| Sbjct: 6652 tggaagtgctggccaaagttttggtgcttttctctgtcctgggatcactcttgag 6706
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 339 bits (171), Expect = 7e-90 Identities = 464/559 (83%), Gaps = 2/559 (0%) Strand = Plus / Plus Query: 2 tggtagagatgttgctgtggcatgcttacttggtgcagaggaatttggtttcagcactgc 61 |||||||||||||||||| || || |||||||| ||||| |||||||| |||||||| || Sbjct: 27409925 tggtagagatgttgctgttgcttgtttacttggagcagaagaatttggattcagcacagc 27409984 Query: 62 tccactgatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgt 121 ||| | |||||||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct: 27409985 gccattaatcacacttggctgcattatgatgaggaagtgccataccaacacttgccctgc 27410044 Query: 122 tggtatagctactcaagatccagtgctccgagaaaaatttgctggagaaccagagcatgt 181 |||||| ||||| ||||||||||||||||| | ||| |||||||| | ||||| ||||| Sbjct: 27410045 tggtattgctacacaagatccagtgctccgcgcaaagtttgctgggaagccagaacatgt 27410104 Query: 182 cattaattttttcttcatgcttgctgaggagctaagagaaattatggctcagcttggcct 241 ||| || | ||||||||||||||||| ||| || ||||||| ||||| ||||||||| | Sbjct: 27410105 cataaactacttcttcatgcttgctgaagaggtacgagaaatcatggcacagcttggctt 27410164 Query: 242 ccgtacaattaatgaaatggttggacgctctgatatgcttgaagttgatccagaagtagt 301 ||| || |||||||||||||||| || || || |||||||| | ||||| ||||| | Sbjct: 27410165 ccgcactgttaatgaaatggttgggcgatcggacatgcttgagatcgatcccaaagtact 27410224 Query: 302 gaagagcaatgagaaacttgagaatattgatctctcactgatcttaacaccagctgcaaa 361 | || |||| ||||||||||| || ||||||||||||| | | | | ||||||||| | Sbjct: 27410225 ggagggcaacgagaaacttgaaaacattgatctctcacggctgctgaaaccagctgctga 27410284 Query: 362 gattcgtcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttggc 421 ||| | |||||||||| ||| || |||||||| |||||||| |||||||| ||| |||| Sbjct: 27410285 aattagccctggggctgttcaatattgtgttgagaagcaagatcatggcctcgacatggc 27410344 Query: 422 tttggataacaaactcatagctttatcaacggccgcgctt-gaaaaggaagttcgtgttt 480 || ||||||||||||||||| | ||||| || || ||| ||||||| |||||||||| Sbjct: 27410345 attagataacaaactcatagcctcctcaacagctgcccttcgaaaagg-tgttcgtgttt 27410403 Query: 481 tcatcgagactccaatcaagaacactaatcgggcagttggcactacccttagccatgaag 540 |||| ||||| ||| | ||||| ||| || || ||||| |||| || |||||||||| Sbjct: 27410404 tcattgagacaccagtacggaacattaaccgagctgttggtactatgctcagccatgaag 27410463 Query: 541 tcacaaaacgttatcacat 559 |||||||||| |||||||| Sbjct: 27410464 tcacaaaacggtatcacat 27410482 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 599 tggaagtgctggtcagagtcttggtgcttttctctgtcctggaataacccttgag 653 |||||||||||| || ||| |||||||||||||||||||||| || || |||||| Sbjct: 27410522 tggaagtgctggccaaagttttggtgcttttctctgtcctgggatcactcttgag 27410576
>gb|AF314925.2| Phaseolus vulgaris NADH glutamate synthase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 7408 Score = 174 bits (88), Expect = 2e-40 Identities = 253/308 (82%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||| ||| Sbjct: 4114 cttggtgcagaagagtttggtttcagtactgctccactcatcactcttggctgcatcatg 4173 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 |||||||| || || | ||||| || || ||||| || |||||||||||||| || ||| Sbjct: 4174 atgcggaagtgccacaagaacacctgtcccgttggcattgctactcaagatcccgtactc 4233 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 ||||||| |||||||||||||| |||||||| || || || || || ||| | || || Sbjct: 4234 agagaaaagtttgctggagaacccgagcatgttatcaacttcttttttatggtggcagaa 4293 Query: 210 gagctaagagaaattatggctcagcttggcctccgtacaattaatgaaatggttggacgc 269 || | |||||||||||| | |||||||| | | ||| ||||||| |||||||| || Sbjct: 4294 gaaatgagagaaattatgtcccagcttgggtttaggacagttaatgagatggttggtcga 4353 Query: 270 tctgatatgcttgaagttgatccagaagtagtgaagagcaatgagaaacttgagaatatt 329 ||||||||||||||||||||| ||||| | |||||||| |||||||| || || ||| Sbjct: 4354 tctgatatgcttgaagttgataaggaagtcattaagagcaacgagaaactagaaaacatt 4413 Query: 330 gatctctc 337 |||||||| Sbjct: 4414 gatctctc 4421
>gb|AF314924.2| Phaseolus vulgaris NADH glutamate synthase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 7050 Score = 159 bits (80), Expect = 1e-35 Identities = 251/308 (81%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| ||||||||||||||||| |||||||| || || ||||||||||| ||| Sbjct: 3859 cttggtgcagaagaatttggtttcagcacagctccactcattactcttggctgcataatg 3918 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 ||||| || ||||| | || || ||||||||||| || ||||| ||||||||||| || Sbjct: 3919 atgcgcaagtgtcacaagaatacctgccctgttggcattgctacgcaagatccagtactg 3978 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 |||| || |||||||||||||| || || |||||||| ||||| |||||| | || || Sbjct: 3979 agagagaagtttgctggagaacctgaacacgtcattaacttttttttcatgatagcggaa 4038 Query: 210 gagctaagagaaattatggctcagcttggcctccgtacaattaatgaaatggttggacgc 269 || | |||||||||||| | ||| |||| | ||||| | || || |||||||| || Sbjct: 4039 gaaatgagagaaattatgtcccagattgggtttcgtactgtcaaagagatggttggtcgt 4098 Query: 270 tctgatatgcttgaagttgatccagaagtagtgaagagcaatgagaaacttgagaatatt 329 || || ||||| ||||||||| |||||| | || |||||||||||||||||||| ||| Sbjct: 4099 tcagacatgctcgaagttgataaagaagtcattaaaagcaatgagaaacttgagaacatt 4158 Query: 330 gatctctc 337 || ||||| Sbjct: 4159 gacctctc 4166 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 375 gctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttggataacaaa 434 |||||||| |||||||||||||||||||| ||||| | ||| |||| |||||||| ||| Sbjct: 4204 gctgctcaatactgtgttgaaaagcaagatcatggtttggacatggccttggataataaa 4263 Query: 435 ctcatagct 443 || |||||| Sbjct: 4264 cttatagct 4272
>gb|L01660.1|ALFNADHSYN Medicago sativa NADH-glutamate synthase mRNA, comlete cds Length = 7174 Score = 151 bits (76), Expect = 3e-33 Identities = 250/308 (81%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| || | ||||||||| |||||||| || || || ||||||||||| ||| Sbjct: 3912 cttggtgcagaagagtatggtttcagtactgctcccctcattactcttggctgcatcatg 3971 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 |||||||| || || | ||||| || |||||||| || ||||||||||||||||| || Sbjct: 3972 atgcggaagtgccacaagaacacctgtcctgttggaattgctactcaagatccagtactt 4031 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 |||| ||||||||||||||||| ||||| || ||||| || || || ||| | || || Sbjct: 4032 agagagaaatttgctggagaacctgagcacgttattaacttcttttttatggtggcagaa 4091 Query: 210 gagctaagagaaattatggctcagcttggcctccgtacaattaatgaaatggttggacgc 269 ||| | |||||||||||| | || ||||| | | ||| | |||||||||||||| || Sbjct: 4092 gagatgagagaaattatgtcccaacttgggtttagaacagtcaatgaaatggttggccgt 4151 Query: 270 tctgatatgcttgaagttgatccagaagtagtgaagagcaatgagaaacttgagaatatt 329 || |||||||| ||||||||| |||||| || ||| | |||| ||||| ||||||||| Sbjct: 4152 tcagatatgctcgaagttgataaagaagttgttaagggaaatgcaaaactagagaatatt 4211 Query: 330 gatctctc 337 |||||||| Sbjct: 4212 gatctctc 4219 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 375 gctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttggataacaaa 434 ||||| || ||||||||| |||||||||| ||||| | ||| ||||||||||||| || Sbjct: 4257 gctgcccaatactgtgttcaaaagcaagatcatggtttggacatggctttggataataag 4316 Query: 435 ctcata 440 |||||| Sbjct: 4317 ctcata 4322
>gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependent glutamate synthase gene, complete cds Length = 14306 Score = 151 bits (76), Expect = 3e-33 Identities = 250/308 (81%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| || | ||||||||| |||||||| || || || ||||||||||| ||| Sbjct: 9858 cttggtgcagaagagtatggtttcagtactgctcccctcattactcttggctgcatcatg 9917 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 |||||||| || || | ||||| || |||||||| || ||||||||||||||||| || Sbjct: 9918 atgcggaagtgccacaagaacacctgtcctgttggaattgctactcaagatccagtactt 9977 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 |||| ||||||||||||||||| ||||| || ||||| || || || ||| | || || Sbjct: 9978 agagagaaatttgctggagaacctgagcacgttattaacttcttttttatggtggcagaa 10037 Query: 210 gagctaagagaaattatggctcagcttggcctccgtacaattaatgaaatggttggacgc 269 ||| | |||||||||||| | || ||||| | | ||| | |||||||||||||| || Sbjct: 10038 gagatgagagaaattatgtcccaacttgggtttagaacagtcaatgaaatggttggccgt 10097 Query: 270 tctgatatgcttgaagttgatccagaagtagtgaagagcaatgagaaacttgagaatatt 329 || |||||||| ||||||||| |||||| || ||| | |||| ||||| ||||||||| Sbjct: 10098 tcagatatgctcgaagttgataaagaagttgttaagggaaatgcaaaactagagaatatt 10157 Query: 330 gatctctc 337 |||||||| Sbjct: 10158 gatctctc 10165 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 375 gctgctcagtactgtgttgaaaagcaagaccatggccttgacttggctttggataacaaa 434 ||||| || ||||||||| |||||||||| ||||| | ||| ||||||||||||| || Sbjct: 10203 gctgcccaatactgtgttcaaaagcaagatcatggtttggacatggctttggataataag 10262 Query: 435 ctcata 440 |||||| Sbjct: 10263 ctcata 10268
>ref|NM_124725.2| Arabidopsis thaliana GLT1 AT5G53460 (GLT1) mRNA, complete cds Length = 6627 Score = 107 bits (54), Expect = 5e-20 Identities = 150/182 (82%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| ||||||||||| || ||||| || || |||||||| || || || ||| Sbjct: 3739 cttggtgcagaagaatttggttttagtactgcaccccttatcacactagggtgtatcatg 3798 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 ||| | || || || | ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 3799 atgagaaagtgccacaagaacacctgccctgtgggaattgctacccaagatccagttctc 3858 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 || |||||||||||||| || || || ||||| ||||| || ||||| |||||||||||| Sbjct: 3859 cgtgaaaaatttgctggggagcctgaacatgttattaacttcttctttatgcttgctgag 3918 Query: 210 ga 211 || Sbjct: 3919 ga 3920 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 361 agattcgtcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttgg 420 |||||||||||||||||||||||||||||||| | || ||||| ||||| | ||| ||| Sbjct: 4070 agattcgtcctggggctgctcagtactgtgttcagaaacaagatcatggtttagacatgg 4129 Query: 421 ctttggat 428 |||||||| Sbjct: 4130 ctttggat 4137 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 595 tcactggaagtgctggtcagagtcttggtgcttttctctgtcctggaat 643 |||| ||||||||||| ||||||||||| ||||| | ||||||||||| Sbjct: 4304 tcacaggaagtgctgggcagagtcttggagctttcttgtgtcctggaat 4352
>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8 Length = 54528 Score = 107 bits (54), Expect = 5e-20 Identities = 150/182 (82%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 ||||||||||| ||||||||||| || ||||| || || |||||||| || || || ||| Sbjct: 46896 cttggtgcagaagaatttggttttagtactgcaccccttatcacactagggtgtatcatg 46955 Query: 90 atgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagtgctc 149 ||| | || || || | ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 46956 atgagaaagtgccacaagaacacctgccctgtgggaattgctacccaagatccagttctc 47015 Query: 150 cgagaaaaatttgctggagaaccagagcatgtcattaattttttcttcatgcttgctgag 209 || |||||||||||||| || || || ||||| ||||| || ||||| |||||||||||| Sbjct: 47016 cgtgaaaaatttgctggggagcctgaacatgttattaacttcttctttatgcttgctgag 47075 Query: 210 ga 211 || Sbjct: 47076 ga 47077 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 361 agattcgtcctggggctgctcagtactgtgttgaaaagcaagaccatggccttgacttgg 420 |||||||||||||||||||||||||||||||| | || ||||| ||||| | ||| ||| Sbjct: 47227 agattcgtcctggggctgctcagtactgtgttcagaaacaagatcatggtttagacatgg 47286 Query: 421 ctttggat 428 |||||||| Sbjct: 47287 ctttggat 47294 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 595 tcactggaagtgctggtcagagtcttggtgcttttctctgtcctggaat 643 |||| ||||||||||| ||||||||||| ||||| | ||||||||||| Sbjct: 47461 tcacaggaagtgctgggcagagtcttggagctttcttgtgtcctggaat 47509
>emb|Z71521.1|ODGLSN O.danica NAD(P)H-dependent glutamate synthase Length = 1189 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttcagcactgctccactgatcacacttggctgcattatg 89 |||||||| ||||| ||||||||| ||||||||| || ||||| ||||| ||||||||| Sbjct: 332 cttggtgccgaggagtttggtttcgccactgctcctctcatcacgcttgggtgcattatg 391 Query: 90 atgcggaaatgtcataccaacacttgccctgttgg 124 ||||| ||||| ||| |||||||||||| ||||| Sbjct: 392 atgcgtaaatgccatctcaacacttgcccagttgg 426
>ref|XM_396817.2| PREDICTED: Apis mellifera similar to GA21956-PA (LOC413372), mRNA Length = 5143 Score = 69.9 bits (35), Expect = 1e-08 Identities = 92/111 (82%) Strand = Plus / Plus Query: 86 tatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaagatccagt 145 ||||||| ||||||||||| || ||||||||||| ||||| || ||||||||||||| Sbjct: 2361 tatgatgaggaaatgtcatttaaatacttgccctgtgggtattgcaactcaagatccaga 2420 Query: 146 gctccgagaaaaatttgctggagaaccagagcatgtcattaattttttctt 196 || ||| |||||||| ||| ||||||| ||||| ||||| |||||||| Sbjct: 2421 acttcgaaaaaaatttaatgggaaaccagaacatgtgattaactttttctt 2471
>ref|XM_367262.1| Magnaporthe grisea 70-15 hypothetical protein (MG07187.4) partial mRNA Length = 6357 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 ||||||||||||||| |||||||||| |||||| ||||| || || || ||||||||| Sbjct: 3553 ggctgcattatgatgaggaaatgtcacctcaacacatgccccgtgggaattgctactcaa 3612 Query: 138 gatcc 142 ||||| Sbjct: 3613 gatcc 3617
>ref|XM_718819.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03719) partial mRNA Length = 8874 Score = 54.0 bits (27), Expect = 6e-04 Identities = 99/123 (80%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 ||||| ||||||||| ||||||||||| || | |||||||| |||||| ||| ||| Sbjct: 4249 ggctgtattatgatgaggaaatgtcatttaaatatatgccctgtaggtatatgtacacaa 4308 Query: 138 gatccagtgctccgagaaaaatttgctggagaaccagagcatgtcattaattttttcttc 197 ||||||| | || |||||||||| ||| ||||||| |||| ||||||||||| ||| Sbjct: 4309 gatccagaattaagaaaaaaatttgcaggaaaaccagaatatgttattaatttttttttc 4368 Query: 198 atg 200 ||| Sbjct: 4369 atg 4371
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactca 136 ||||| || |||||||| || ||||||| |||||||||||||||||||| || ||||| Sbjct: 632329 ggctgtatcatgatgcgtaagtgtcataaaaacacttgccctgttggtattgcaactca 632271
>ref|XM_745392.1| Aspergillus fumigatus Af293 NADH-dependent glutamate synthase GLT1 (Afu1g07380) partial mRNA Length = 6381 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 |||||||| |||||||||||||| ||| || ||||| ||||||||||| || ||||| Sbjct: 3547 ggctgcatcatgatgcggaaatgccatctgaatacttgtcctgttggtatcgcaactcag 3606 Query: 138 gatccagtgctccg 151 ||||| | |||||| Sbjct: 3607 gatcccgagctccg 3620
>gb|AE004307.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 215 of 251 of the complete chromosome Length = 14930 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtat 127 ||||| || |||||||| |||||||||| |||||||||||||| ||||| Sbjct: 11944 ggctgtatcatgatgcgtaaatgtcataaaaacacttgccctgtcggtat 11993
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 87 atgatgcggaaatgtcataccaacacttgccctgttggtatagctactca 136 |||||||| || ||||||| |||||||||||||||||||| || ||||| Sbjct: 560715 atgatgcgtaagtgtcataaaaacacttgccctgttggtattgcaactca 560764
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 234 cttggcctccgtacaattaatgaaatggttggacgctc 271 |||||| |||||||||||||||||||| |||| ||||| Sbjct: 3224921 cttggcttccgtacaattaatgaaatgattgggcgctc 3224884
>dbj|D85230.1|PEEGLTD Plectonema boryanum URF141, ORF243, NADH-dependent glutamate synthase large subunit (gltB) and small subunit (gltD) and URF289 genes, partial and complete cds Length = 9036 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 57 actgctccactgatcacacttggctgcattatgatgcggaaatgtcataccaacacttgc 116 ||||||||||| ||||| | |||||||||||||||||| || ||| ||||||||| Sbjct: 5295 actgctccactcgtcacattgggctgcattatgatgcgggtttgccatctcaacacttgt 5354 Query: 117 cctgttggtatagctactcaagatcc 142 || ||||| || || ||||||||||| Sbjct: 5355 ccggttgggattgcgactcaagatcc 5380
>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24 Length = 294050 Score = 48.1 bits (24), Expect = 0.037 Identities = 63/76 (82%) Strand = Plus / Minus Query: 67 tgatcacacttggctgcattatgatgcggaaatgtcataccaacacttgccctgttggta 126 ||||||| || |||||||| ||||||||||| ||||| ||||||||||| || || | Sbjct: 215869 tgatcactctgggctgcatcatgatgcggaagtgtcacttgaacacttgcccggtcggca 215810 Query: 127 tagctactcaagatcc 142 | || ||||||||||| Sbjct: 215809 tcgcgactcaagatcc 215794
>ref|NM_001016460.2| Xenopus tropicalis hypothetical protein LOC549214 (LOC549214), mRNA Length = 2528 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 tgaggagctaagagaaattatgg 228 ||||||||||||||||||||||| Sbjct: 787 tgaggagctaagagaaattatgg 809
>emb|AM056054.1| Fusarium fujikuroi gltA gene for glutamate synthase, exons 1-3, strain IMI58289 Length = 8741 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 108 aacacttgccctgttggtatagctactcaagatcc 142 |||||||||||||||||||| ||||| || ||||| Sbjct: 4970 aacacttgccctgttggtatcgctacccaggatcc 5004
>gb|BC094158.1| Xenopus laevis cDNA clone MGC:115288 IMAGE:6861103, complete cds Length = 4580 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 tgaggagctaagagaaattatgg 228 ||||||||||||||||||||||| Sbjct: 786 tgaggagctaagagaaattatgg 808
>emb|CR760956.2| Xenopus tropicalis finished cDNA, clone TEgg028c14 Length = 2528 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 tgaggagctaagagaaattatgg 228 ||||||||||||||||||||||| Sbjct: 787 tgaggagctaagagaaattatgg 809
>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence Length = 187634 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 538 aagtcacaaaacgttatcacat 559 |||||||||||||||||||||| Sbjct: 124395 aagtcacaaaacgttatcacat 124374
>ref|XM_448821.1| Candida glabrata CBS138, CAGL0L01089g partial mRNA Length = 6459 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Plus Query: 98 atgtcataccaacacttgccctgttggtatagctactcaaga 139 ||||||||||||||| || | |||||||| ||||||||||| Sbjct: 3597 atgtcataccaacacatgtgcagttggtattgctactcaaga 3638
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 98 atgtcataccaacacttgccctgttggtatagctactcaaga 139 ||||||||||||||| || | |||||||| ||||||||||| Sbjct: 124762 atgtcataccaacacatgtgcagttggtattgctactcaaga 124721
>gb|AC083869.2|AC083869 Homo sapiens chromosome 7 clone RP11-733N14, complete sequence Length = 172237 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gaatattgatctctcactgatc 344 |||||||||||||||||||||| Sbjct: 140095 gaatattgatctctcactgatc 140074
>emb|AL032631.1|CEY106G6H Caenorhabditis elegans YAC Y106G6H, complete sequence Length = 48613 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 tgaagttgatccagaagtagt 301 ||||||||||||||||||||| Sbjct: 23895 tgaagttgatccagaagtagt 23915
>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a nicotinamide nucleotide adenylyltransferase 1 (NMNAT1) pseudogene and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 184024 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 gtacaattaatgaaatggttg 264 ||||||||||||||||||||| Sbjct: 101575 gtacaattaatgaaatggttg 101555
>emb|AL590605.1|SPAPB1E7 S.pombe chromosome I BAC pB1E7 Length = 41788 Score = 42.1 bits (21), Expect = 2.3 Identities = 54/65 (83%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 ||||| || |||||||| ||||||||| || ||||| || |||||||| || |||||| Sbjct: 25149 ggctgtatcatgatgcgtaaatgtcatctgaatacttgtcccgttggtatcgcaactcaa 25208 Query: 138 gatcc 142 ||||| Sbjct: 25209 gatcc 25213
>ref|NM_001019557.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAPB1E7.07), partial mRNA Length = 6336 Score = 42.1 bits (21), Expect = 2.3 Identities = 54/65 (83%) Strand = Plus / Plus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 ||||| || |||||||| ||||||||| || ||||| || |||||||| || |||||| Sbjct: 3571 ggctgtatcatgatgcgtaaatgtcatctgaatacttgtcccgttggtatcgcaactcaa 3630 Query: 138 gatcc 142 ||||| Sbjct: 3631 gatcc 3635
>ref|NM_060331.3| Caenorhabditis elegans yeast SEC homolog family member (sec-8) (sec-8) mRNA, complete cds Length = 2812 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 tgaagttgatccagaagtagt 301 ||||||||||||||||||||| Sbjct: 2217 tgaagttgatccagaagtagt 2237
>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510C12 Length = 177049 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 tcagtactgtgttgaaaagca 400 ||||||||||||||||||||| Sbjct: 142957 tcagtactgtgttgaaaagca 142937
>gb|AY349626.1| Uncultured Prochlorococcus sp. clone SCS-80-22 RNA polymerase subunit (rpoC1) gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttgctgaggagctaagagaa 221 |||||||||||||||||||| Sbjct: 530 ttgctgaggagctaagagaa 549
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 108 aacacttgccctgttggtatagctactcaagatccagtgctccgagaaaaatttgc 163 |||||||| ||||||||||| || || ||||| |||| ||||||| |||||||| Sbjct: 896336 aacacttgtcctgttggtatcgccacccaagacccagctctccgagccaaatttgc 896281
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 tgcttttctctgtcctggaa 642 |||||||||||||||||||| Sbjct: 877944 tgcttttctctgtcctggaa 877963
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tgccctgttggtatagctactcaa 137 |||||||||||| ||||||||||| Sbjct: 164725 tgccctgttggtgtagctactcaa 164702
>ref|XM_567571.1| Cryptococcus neoformans var. neoformans JEC21 glutamate synthase (NADH) (CNJ02910) partial mRNA Length = 6665 Score = 40.1 bits (20), Expect = 8.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 108 aacacttgccctgttggtatagctactcaagatccagtgctccgagaaaaatttgc 163 |||||||| ||||||||||| || || ||||| |||| ||||||| |||||||| Sbjct: 3463 aacacttgtcctgttggtatcgccacccaagacccagctctccgagccaaatttgc 3518
>gb|AC023600.19| Homo sapiens 3 BAC RP11-754J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185326 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 aacaaactcatagctttatc 448 |||||||||||||||||||| Sbjct: 154534 aacaaactcatagctttatc 154515
>gb|AC122522.4| Mus musculus BAC clone RP24-486D23 from chromosome 5, complete sequence Length = 186083 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 tctctgtcctggaataaccc 648 |||||||||||||||||||| Sbjct: 98982 tctctgtcctggaataaccc 99001
>ref|XM_674554.1| Plasmodium berghei strain ANKA NAD(P)H-dependent glutamate synthase (PB000874.03.0) partial mRNA Length = 8607 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 154 aaaaatttgctggagaaccagagcatgtcattaatttttt 193 |||||||||| ||| ||||||| |||| ||||||||||| Sbjct: 4178 aaaaatttgcaggaaaaccagaatatgttattaatttttt 4217
>emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chromosome 1 Contains a translational inhibitor protein p14.5 (UK114) pseudogene, complete sequence Length = 128479 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tttgctggagaaccagagca 178 |||||||||||||||||||| Sbjct: 54038 tttgctggagaaccagagca 54019
>gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180454 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aatgagaaacttgagaatat 328 |||||||||||||||||||| Sbjct: 134075 aatgagaaacttgagaatat 134056
>emb|AL662881.10| Mouse DNA sequence from clone RP23-321C9 on chromosome 11 Contains part of the gene for a novel protein similar to Tensin Tns, complete sequence Length = 154959 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 atggccttgacttggctttg 425 |||||||||||||||||||| Sbjct: 147697 atggccttgacttggctttg 147716
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgctggagaaccagagcat 179 |||||||||||||||||||| Sbjct: 49084 ttgctggagaaccagagcat 49103
>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170301 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgctggagaaccagagcat 179 |||||||||||||||||||| Sbjct: 91259 ttgctggagaaccagagcat 91278
>gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-22B18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167630 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agtgaagagcaatgagaaac 318 |||||||||||||||||||| Sbjct: 12594 agtgaagagcaatgagaaac 12613
>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222518 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aatgagaaacttgagaatat 328 |||||||||||||||||||| Sbjct: 26906 aatgagaaacttgagaatat 26887
>ref|NM_132385.2| Drosophila melanogaster CG2967-RA (CG2967), mRNA Length = 5256 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgctggagaaccagagcat 179 |||||||||||||||||||| Sbjct: 3767 ttgctggagaaccagagcat 3786
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 8.9 Identities = 50/60 (83%) Strand = Plus / Minus Query: 78 ggctgcattatgatgcggaaatgtcataccaacacttgccctgttggtatagctactcaa 137 ||||| || |||||||| || ||||||| ||||| || ||||||||||| || |||||| Sbjct: 495636 ggctgtatcatgatgcgtaagtgtcataagaacacctgtcctgttggtatcgcgactcaa 495577
>gb|AF269811.1|AF269811 Staphylococcus epidermidis strain SR1 clone step.1023h07 genomic sequence Length = 3641 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttc 53 ||||||||||| |||||||||||| Sbjct: 1300 cttggtgcagaagaatttggtttc 1323
>gb|AF269797.1|AF269797 Staphylococcus epidermidis strain SR1 clone step.1023f09 genomic sequence Length = 3188 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cttggtgcagaggaatttggtttc 53 ||||||||||| |||||||||||| Sbjct: 555 cttggtgcagaagaatttggtttc 532
>gb|AF269763.1|AF269763 Staphylococcus epidermidis strain SR1 clone step.1023a09 genomic sequence Length = 3443 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cttggtgcagaggaatttggtttc 53 ||||||||||| |||||||||||| Sbjct: 2363 cttggtgcagaagaatttggtttc 2340
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 cttggtgcagaggaatttggtttc 53 ||||||||||| |||||||||||| Sbjct: 95589 cttggtgcagaagaatttggtttc 95612
>gb|AF181639.1|AF181639 Drosophila melanogaster BcDNA.GH09358 (BcDNA.GH09358) mRNA, complete cds Length = 5243 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgctggagaaccagagcat 179 |||||||||||||||||||| Sbjct: 3756 ttgctggagaaccagagcat 3775
>gb|AC154106.2| Mus musculus BAC clone RP24-312B8 from Y, complete sequence Length = 136838 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 agaaaaatttgctggagaac 171 |||||||||||||||||||| Sbjct: 74531 agaaaaatttgctggagaac 74512
>gb|U65598.1|BSU65598 Basidiomycete from a bamboo (Sasa variegata) nuclear ribosomal RNA internal transcribed spacers, ITS1 and ITS2 and 5.8S ribosomal RNA gene, complete sequence Length = 630 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 attaatgaaatggttggacgctct 272 |||||||||||| ||||||||||| Sbjct: 29 attaatgaaatgcttggacgctct 52
>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete sequence Length = 425677 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 agtgaagagcaatgagaaac 318 |||||||||||||||||||| Sbjct: 269797 agtgaagagcaatgagaaac 269816
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttgctggagaaccagagcat 179 |||||||||||||||||||| Sbjct: 281086 ttgctggagaaccagagcat 281105
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cttggtgcagaggaatttggtttc 53 ||||||||||| |||||||||||| Sbjct: 2392272 cttggtgcagaagaatttggtttc 2392249
>gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, complete sequence Length = 165568 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gtgcagaggaatttggtttcagca 57 |||||||||||||||||| ||||| Sbjct: 153251 gtgcagaggaatttggttccagca 153274
>emb|CT030173.7| Mouse DNA sequence from clone RP24-264B23 on chromosome 12, complete sequence Length = 156510 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cttgaaaaggaagttcgtgttttc 482 |||||||||||||||| ||||||| Sbjct: 21379 cttgaaaaggaagttcctgttttc 21402
>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome Length = 1181404 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tacaattaatgaaatggttg 264 |||||||||||||||||||| Sbjct: 576722 tacaattaatgaaatggttg 576741
>gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosome y, complete sequence Length = 169086 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 agaaaaatttgctggagaac 171 |||||||||||||||||||| Sbjct: 9415 agaaaaatttgctggagaac 9396
>emb|AL590674.5| Human DNA sequence from clone RP11-286N24 on chromosome 1, complete sequence Length = 114056 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tttgctggagaaccagagca 178 |||||||||||||||||||| Sbjct: 54755 tttgctggagaaccagagca 54736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,752,518 Number of Sequences: 3902068 Number of extensions: 6752518 Number of successful extensions: 119802 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119411 Number of HSP's gapped (non-prelim): 372 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)