>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +2

Query: 65  GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 178
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = +2

Query: 65  GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 178
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +2

Query: 62  GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 178
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = +2

Query: 65  GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 172
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 5   FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 163
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 161  CRRRSLPLGRSSWHFGRCNLP 99
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 95   VPEGCTDQNAKNYDPTARSD 154
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402

>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  ARAGRLHRPKCQELRPNGKERRR 159
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169

>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4)
          Length = 378

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 8   LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 124
           LLRL+N      +S     G+GA  G+   P GC + N+
Sbjct: 88  LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126

>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 209 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 105
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38

>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 235 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 74
           ++RCG    +  ++K       K  AVV  C    VL   G+L GA  R+     +C
Sbjct: 57  YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,831,183
Number of Sequences: 219361
Number of extensions: 948347
Number of successful extensions: 2547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)