ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal8j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197931.1| Oryza sativa (japonica cultivar-group) unknown ... 339 5e-90
2gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 339 5e-90
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 339 5e-90
4dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 5e-90
5dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 5e-90
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 339 5e-90
7gb|AY107177.1| Zea mays PCO111128 mRNA sequence 46 0.11
8ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.44
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
10dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
11dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.44
12dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
13ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
14gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone... 42 1.7
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 42 1.7
17dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19gb|AF192975.1|AF192975 Oryza sativa unknown gene 42 1.7
20dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
21gb|AC148120.4| Saimiri boliviensis boliviensis clone CH254-165N1... 42 1.7
22gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 40 6.9
23gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, c... 40 6.9
24gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.9
25gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, com... 40 6.9
26gb|AC078882.8| Homo sapiens BAC clone RP11-194C2 from 2, complet... 40 6.9
27emb|AJ328320.1|HSA328320 Homo sapiens genomic sequence surroundi... 40 6.9
28emb|CT572996.14| Mouse DNA sequence from clone RP23-13C8 on chro... 40 6.9
29gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosom... 40 6.9
30gb|AC113180.5| Mus musculus chromosome 16, clone RP23-366B13, co... 40 6.9 
>ref|NM_197931.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0056G17.7), mRNA
          Length = 1251

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Plus

                                                                       
Query: 19  gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
           |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 598 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 657

                                                                       
Query: 79  gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
           |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 658 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 717

                                                                       
Query: 139 ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
           |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 718 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 777

                                                                       
Query: 199 atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
           | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 778 acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 837

                                                                       
Query: 259 cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
           | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 838 cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 897

                                                                       
Query: 319 gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
             |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 898 cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 957

                                  
Query: 379 agcgtatcaggttgaagagggca 401
           |||||||||| ||||||||||||
Sbjct: 958 agcgtatcagattgaagagggca 980
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
              sequence
          Length = 139999

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                          
Query: 19     gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
              |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 127451 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 127392

                                                                          
Query: 79     gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
              |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 127391 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 127332

                                                                          
Query: 139    ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
              |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 127331 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 127272

                                                                          
Query: 199    atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
              | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 127271 acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 127212

                                                                          
Query: 259    cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
              | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 127211 cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 127152

                                                                          
Query: 319    gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
                |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 127151 cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 127092

                                     
Query: 379    agcgtatcaggttgaagagggca 401
              |||||||||| ||||||||||||
Sbjct: 127091 agcgtatcagattgaagagggca 127069
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                            
Query: 19       gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
                |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 22672782 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22672723

                                                                            
Query: 79       gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
                |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 22672722 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22672663

                                                                            
Query: 139      ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
                |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 22672662 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 22672603

                                                                            
Query: 199      atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
                | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 22672602 acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 22672543

                                                                            
Query: 259      cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
                | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 22672542 cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 22672483

                                                                            
Query: 319      gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
                  |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 22672482 cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 22672423

                                       
Query: 379      agcgtatcaggttgaagagggca 401
                |||||||||| ||||||||||||
Sbjct: 22672422 agcgtatcagattgaagagggca 22672400
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>dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F07, full
            insert sequence
          Length = 1281

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Plus

                                                                        
Query: 19   gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
            |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 643  gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 702

                                                                        
Query: 79   gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
            |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 703  gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 762

                                                                        
Query: 139  ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
            |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 763  ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 822

                                                                        
Query: 199  atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
            | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 823  acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 882

                                                                        
Query: 259  cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
            | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 883  cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 942

                                                                        
Query: 319  gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
              |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 943  cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 1002

                                   
Query: 379  agcgtatcaggttgaagagggca 401
            |||||||||| ||||||||||||
Sbjct: 1003 agcgtatcagattgaagagggca 1025
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>dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141G14, full
            insert sequence
          Length = 1357

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Plus

                                                                        
Query: 19   gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
            |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 665  gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 724

                                                                        
Query: 79   gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
            |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 725  gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 784

                                                                        
Query: 139  ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
            |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 785  ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 844

                                                                        
Query: 199  atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
            | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 845  acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 904

                                                                        
Query: 259  cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
            | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 905  cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 964

                                                                        
Query: 319  gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
              |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 965  cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 1024

                                   
Query: 379  agcgtatcaggttgaagagggca 401
            |||||||||| ||||||||||||
Sbjct: 1025 agcgtatcagattgaagagggca 1047
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  339 bits (171), Expect = 5e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                            
Query: 19       gtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgt 78
                |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||||  |
Sbjct: 22685250 gtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagat 22685191

                                                                            
Query: 79       gccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggc 138
                |||| |||||  | ||||| |||||||||||| |||| ||||| || ||||| |||||||
Sbjct: 22685190 gcccacctgcagtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggc 22685131

                                                                            
Query: 139      ttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaa 198
                |||| |||||||||||||| || ||| || ||||||| ||| |||| |||||||||||||
Sbjct: 22685130 ttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaa 22685071

                                                                            
Query: 199      atgttcctcttggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcgg 258
                | ||||| |||||||||||||||||||||||    || || ||||||||||||||||| |
Sbjct: 22685070 acgttccccttggcatctggagggagcacacggagaaattctcagtgcagtggtttgccg 22685011

                                                                            
Query: 259      cggtccatgctgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaaga 318
                | |||||||| || || ||||||||||| ||||| ||||||||  | || ||||| ||||
Sbjct: 22685010 cagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaaga 22684951

                                                                            
Query: 319      gcgccatggcccttacaatagctgcctcgatattgggtcagacaattggttcaagagctg 378
                  |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 22684950 cagccatggcgcttaccatagctgcctcaatattgggtcagacaattggttcgagagctg 22684891

                                       
Query: 379      agcgtatcaggttgaagagggca 401
                |||||||||| ||||||||||||
Sbjct: 22684890 agcgtatcagattgaagagggca 22684868
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>gb|AY107177.1| Zea mays PCO111128 mRNA sequence
          Length = 539

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 358 agacaattggttcaagagctgagcgtatcaggttgaagagggc 400
           ||||||| || ||||||||||| ||||||||  ||||||||||
Sbjct: 17  agacaatcgggtcaagagctgaacgtatcagactgaagagggc 59
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>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 245  gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
            |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 1122 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 1175
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                     
Query: 245     gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
               |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 3216072 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 3216019
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                    
Query: 245    gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
              |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 131062 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 131009
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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 245  gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
            |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 1121 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 1174
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 245   gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
             |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 25765 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 25712
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>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 246 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 793 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 845
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>gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone MGC:80422
            IMAGE:5155242), complete cds
          Length = 2443

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 45   ctgctgacacccccagctggt 65
            |||||||||||||||||||||
Sbjct: 1564 ctgctgacacccccagctggt 1544
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 246    cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
              ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 876536 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 876484
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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 246  cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
            ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 8624 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 8572
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 246   cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
             ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 57431 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 57379
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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 246  cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
            ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 2907 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 2959
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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 246 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 75  cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 127
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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 246 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 298
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 529 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 581
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>gb|AC148120.4| Saimiri boliviensis boliviensis clone CH254-165N18, complete sequence
          Length = 199625

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    aagttttcagtgcagtggttt 254
              |||||||||||||||||||||
Sbjct: 131920 aagttttcagtgcagtggttt 131940
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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 246 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaagtc 301
           ||||||||||| || |||||||| || || || ||||| |  ||||||||||||||
Sbjct: 862 cagtggtttgcagctgtccatgccgctgttccgttcattgcaatgctgaggaagtc 917
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>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence
          Length = 256720

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    tggcagcaaatgttcctcttggca 213
              |||||| |||||||||||||||||
Sbjct: 246969 tggcaggaaatgttcctcttggca 246992
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      tgcctcttgtcgcaaagctg 47
               ||||||||||||||||||||
Sbjct: 4654188 tgcctcttgtcgcaaagctg 4654169
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>gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, complete sequence
          Length = 178009

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tggcatctggagggagcaca 228
             ||||||||||||||||||||
Sbjct: 28917 tggcatctggagggagcaca 28936
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>gb|AC078882.8| Homo sapiens BAC clone RP11-194C2 from 2, complete sequence
          Length = 87351

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   caaatgttcctcttggcatctgga 219
             ||||||||||| ||||||||||||
Sbjct: 71450 caaatgttcctattggcatctgga 71427
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>emb|AJ328320.1|HSA328320 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-CB17R
          Length = 672

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 468 actgggagctcaggtcctgtccag 491
           |||||||||||||| |||||||||
Sbjct: 323 actgggagctcaggccctgtccag 300
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>emb|CT572996.14| Mouse DNA sequence from clone RP23-13C8 on chromosome 17, complete
             sequence
          Length = 51247

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gcaaaattagcagcagaggg 418
             ||||||||||||||||||||
Sbjct: 49269 gcaaaattagcagcagaggg 49288
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>gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosome 17, complete
           sequence
          Length = 197657

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 gcaaaattagcagcagaggg 418
           ||||||||||||||||||||
Sbjct: 22  gcaaaattagcagcagaggg 41
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>gb|AC113180.5| Mus musculus chromosome 16, clone RP23-366B13, complete sequence
          Length = 215198

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    tggcagcaaatgttcctcttggca 213
              |||||| |||||||||||||||||
Sbjct: 149006 tggcaggaaatgttcctcttggca 149029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,807,129
Number of Sequences: 3902068
Number of extensions: 3807129
Number of successful extensions: 60173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60049
Number of HSP's gapped (non-prelim): 118
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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