ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8j11 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)| (TOP1mt) Length = 601 Score = 33.9 bits (76), Expect = 0.34 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 244 KQSIALLGATPSGPALRGVAKSRSRQQAAGERFGFPRHRHG 122 + ++ LLG P PA RGV SR Q+ +G R+ +H G Sbjct: 10 RAALTLLGEVPRRPASRGVPGSRRTQKGSGARWEKEKHEDG 50
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 33.5 bits (75), Expect = 0.45 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Frame = -2 Query: 281 MAKLIESCS------VPRQTIHSLARCDAVGPGAP---RRGQIPLAPASRWRTLWIP*AS 129 M + ++S S V R+ A+ +A G P RR P APAS + P A Sbjct: 27 MGEFVKSASSTIEPPVARRLKAEFAKDNAKGDSKPVQQRRPAAPSAPASTSSSAPTPAAP 86 Query: 128 PRQQHRSTTQEGATAPAMPTVRKNGG 51 RQ ++ + A P PT R GG Sbjct: 87 ARQASPASAHQQAPTPGAPTPRPQGG 112
>J1L_HCMVA (P17143) Hypothetical protein J1L| Length = 309 Score = 33.1 bits (74), Expect = 0.58 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 165 CWRERDLATPRSAGPDGVAPSKAMDCLPR 251 C R L PRS GP +AP + C+PR Sbjct: 208 CVASRPLFPPRSPGPSSLAPGRCFSCVPR 236
>J1S_HCMVA (P17144) Hypothetical protein J1S| Length = 224 Score = 33.1 bits (74), Expect = 0.58 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 165 CWRERDLATPRSAGPDGVAPSKAMDCLPR 251 C R L PRS GP +AP + C+PR Sbjct: 91 CVASRPLFPPRSPGPSSLAPGRCFSCVPR 119
>NUPL_XENLA (P05221) Nucleoplasmin| Length = 200 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Frame = +2 Query: 470 AARKPASGKKQSE-KKRKLDKEAVSEEQNGP 559 A ++PA+ KK + KK+KLDKE S E++ P Sbjct: 153 AVKRPAATKKAGQAKKKKLDKEDESSEEDSP 183
>UL13_HCMVA (P16755) Hypothetical protein UL13| Length = 473 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -2 Query: 158 WRTLWIP*ASPRQQHRSTTQEGATAPAMPTVRKNGGHDREQ 36 WR W+P RQ + QE A P PTV + R+Q Sbjct: 312 WRRTWVP----RQNPAAEAQELAVIPPAPTVLRQNEEPRQQ 348
>XPC_HUMAN (Q01831) DNA-repair protein complementing XP-C cells (Xeroderma| pigmentosum group C complementing protein) (p125) Length = 939 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 461 SKNAARKPASGKKQSEKKRKLDKEAVSEEQNGPADE 568 +K R A GK+ ++K K + SEE GP D+ Sbjct: 372 AKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDK 407
>GOGA5_ARATH (Q8S8N9) Golgin-84| Length = 707 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 470 AARKPASGKKQSEKKRKLDKEAVSEEQNGPADET 571 + RK + GK+ S KK+KL KE S +++ D++ Sbjct: 38 SGRKGSQGKRTSSKKKKLVKEESSNKRDSSGDQS 71
>DPOE3_PONPY (Q5R4W3) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) Length = 147 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +2 Query: 470 AARKPASGKKQS--EKKRKLDKEAVSEEQNGPADETN 574 A R+ GKK++ +KK+ DK+ SEEQ+ DE N Sbjct: 91 AYRREQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDN 127
>DPOE3_HUMAN (Q9NRF9) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) (Chromatin accessibility complex 17) (HuCHRAC17) (CHRAC-17) (Arsenic-transactivated protein) (AsTP) Length = 147 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +2 Query: 470 AARKPASGKKQS--EKKRKLDKEAVSEEQNGPADETN 574 A R+ GKK++ +KK+ DK+ SEEQ+ DE N Sbjct: 91 AYRREQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDN 127
>NPD_XANCP (Q8PDM9) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein| SIR2 homolog) Length = 293 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 139 GIQSVRQRLAGASGI-WPRLGAPGPTASHRARLWIVCRGTLQ 261 G S RQR S + WPR G P A+H A + RG L+ Sbjct: 59 GELSTRQRYWARSLVGWPRFGLARPNATHHALAALEARGQLE 100
>NPD_XANAC (Q8PQK3) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein| SIR2 homolog) Length = 293 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 139 GIQSVRQRLAGASGI-WPRLGAPGPTASHRARLWIVCRGTLQ 261 G S RQR S + WPR G P A+H A + RG L+ Sbjct: 59 GELSTRQRYWARSLVGWPRFGLAQPNATHHALAALEARGQLE 100
>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go| protein) Length = 1174 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = -2 Query: 251 PRQTIHSLARCDAVGP-GAPRRGQIPLAPASRWRTLWIP*ASPRQQHRSTTQEGATAP 81 P+QT+ S A P G G APAS A +QQH+ST + T P Sbjct: 1048 PKQTLASTAGTATAAPAGVAGSGMTSSAPAS---------ADQQQQHQSTADQSPTTP 1096
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Frame = +3 Query: 156 PAACWRERDLATPRS-------AGPDGVAPSKAMDCLPRHAARFNQLCHQ 284 P+A E A+ RS A P+G P A C+PRH+ + HQ Sbjct: 6828 PSASLPEEAEASERSTEAPAPPASPEGAGPPAAQGCVPRHSVIRSLFYHQ 6877
>MURD_PROMM (Q7V5V5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 460 Score = 29.3 bits (64), Expect = 8.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 157 QRLAGASGIWPRLGAPGPTASHRARLWIVCRGTLQD 264 QR + G+W PG TA+HRA WI G +++ Sbjct: 232 QRSSWDKGLWVSSEGPG-TANHRADFWIDAEGLVRE 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,274,698 Number of Sequences: 219361 Number of extensions: 1294648 Number of successful extensions: 4321 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4314 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
