ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8i20 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 36.6 bits (83), Expect = 0.065 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 396 PSSS +G PS+ A + S T P+ P + T IP +LT AT P +S + Sbjct: 3876 PSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGT--TPIPPELTTTATTPAATSSTV 3932 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 396 PSSS +G PS+ A + S T P+ P + T IP LT AT P +S + Sbjct: 3347 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 3403 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 396 PSSS +G PS+ A + S T P+ P + T IP LT AT P +S + Sbjct: 2120 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 2176 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/57 (36%), Positives = 27/57 (47%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVAS 390 PSSS +G PS+ A + S T P+ P + T IP LT AT P +S Sbjct: 4608 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTSMATTPAATSS 4662 Score = 33.5 bits (75), Expect = 0.55 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 396 PSSS +G PS+ A + S T P+ P + IP LT AT P +S + Sbjct: 2649 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--RPIPPVLTTTATTPAATSSTV 2705
>CPN_DROME (Q02910) Calphotin| Length = 864 Score = 33.5 bits (75), Expect = 0.55 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +1 Query: 211 VDVPSSSENAAGFVPSVNVLAPEVI--PEPSATTPAEVPTSLLTSIPVDLTVAATAPV 378 V +P+ + AA V V +AP V+ P P A +P P + IPV ++ PV Sbjct: 62 VTIPAPAPIAAASVAPVASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPV 119 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Frame = +1 Query: 220 PSSSENAAGFVPS-----VNVLAPEVIPE----PSATTPAEVPTSLLTSIPVDLTVAATA 372 P S+ AA PS V V++P + P A TP P +L + P +T+ A A Sbjct: 9 PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPA 68 Query: 373 PVDVAS 390 P+ AS Sbjct: 69 PIAAAS 74
>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)| Length = 409 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +1 Query: 250 VPSVNVLAPEVIPEPSATTPAEVPTSL--LTSIPVDLTVAATAPVDVAS 390 VP+ N AP P P+A PA T+L +TS+P + AP +S Sbjct: 241 VPTANPPAPAANPAPTAKPPAHAITTLDAVTSLPASAVTSLPAPAAASS 289
>MERA_THIFE (P17239) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)| Length = 547 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -1 Query: 341 ILVSKLVGTSAGVVAEGSGMTSGASTLTLGTKPAAFSLDDGTSTLGYRGAAADAEG 174 + V+ GT A + M G++ L L PA D +T+GY GA A +G Sbjct: 397 VYVAAAAGTRAAI-----NMMGGSAALDLTAMPAVVFTDPQVATVGYSGAEAHRDG 447
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +1 Query: 256 SVNVLAPEVIPEP-SATTPAEVPTSLLTSIPVDLTVAATAPVDVA 387 +VN+ +P I P + T+P + + L + PV+L TAPV++A Sbjct: 428 AVNITSPMNIGHPVTITSPLSMTSPLTLTTPVNLPTPVTAPVNIA 472
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 208 KVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 375 ++ VP+S ++ PSV+ +A +P P+ TP PTS TS+ + ++ AP Sbjct: 432 RLGVPTSMQSNG---PSVSSVASSSVPSPA--TPTLTPTSTATSMSTSVPTSSPAP 482
>MT1_CANGA (P15113) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 62 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 234 KCSWFCAKC*CTCTGSHSGTFCDYTR*SAHKFAY*YPCGSD-RSCNRTCGCG 386 KC C+ C G G C+ + S H CGS SC+ +CGCG Sbjct: 5 KCPNGCSCPNCANGGCQCGDKCECKKQSCHGCGEQCKCGSHGSSCHGSCGCG 56
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = +1 Query: 505 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 ++Q + L GVN + L +LS MGF +RE N + L GG I A Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAA 572
>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = +1 Query: 505 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 ++Q + L GVN + L +LS MGF +RE N + L GG I A Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAA 572
>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1| Length = 354 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/29 (44%), Positives = 22/29 (75%) Frame = +1 Query: 556 LAELSEMGFDDRETNKELLAKNGGSIKRA 642 L++L+EMGF D E N + L ++GG+++ A Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGA 346
>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) (hPLIC-1) Length = 589 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = +1 Query: 505 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 ++Q + L GVN + L +LS MGF +RE N + L GG I A Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAA 579
>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| Length = 380 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 538 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 ++W P L +L +MG D E + L GG I+ A Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAA 370
>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP) Length = 380 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 538 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 ++W P L +L +MG D E + L GG I+ A Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAA 370
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 220 PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 375 P++S + P+ + +P P S T+P PT+ TS T + T+P Sbjct: 1447 PTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSP 1498
>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 624 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 9/59 (15%) Frame = +1 Query: 493 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRA 642 N+ ++Q V L G N + L +L+ MGF +RE N + L GG I A Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAA 614
>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging| integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein 1) Length = 593 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +1 Query: 211 VDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 375 V PS E F ++L + P P T+P + PT SIP DL +P Sbjct: 372 VTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLWEPTESP 426
>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)| Length = 396 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +1 Query: 556 LAELSEMGFDDRETNKELLAKNGGSIKRA 642 LAEL +MGF D N + L+ G+I RA Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRA 227
>CASK_HUMAN (P07498) Kappa-casein precursor| Length = 182 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%) Frame = +1 Query: 199 LYPK-VDVPSSSENAAGFVPSVNVLAP-EVIPEP-------SATTPAEVPTSLLTSIPVD 351 L+P + +P +P++N +A E P P S TP S++TS P Sbjct: 113 LHPSFIAIPPKKIQDKIIIPTINTIATVEPTPAPATEPTVDSVVTPEAFSESIITSTPET 172 Query: 352 LTVAATAP 375 TVA T P Sbjct: 173 TTVAVTPP 180
>PKN2_MYXXA (P54736) Serine/threonine-protein kinase pkn2 (EC 2.7.11.1)| Length = 830 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -1 Query: 323 VGTSAGVVAEGSGMTSGASTLTLGTKPAAFSLDDGTSTLGYRGAA 189 +GT A V GSG T + T GT A+ S T T + G A Sbjct: 290 LGTPAYVPQPGSGATPSSGTSVFGTGSASGSSSGPTGTAAFAGVA 334
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 448 MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWD 549 MGF LN +LR++ YN+ Q V +L VN D Sbjct: 949 MGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982
>DMRT1_HUMAN (Q9Y5R6) Doublesex- and mab-3-related transcription factor 1 (DM| domain expressed in testis protein 1) Length = 373 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -1 Query: 344 GILVSKLVGTSAGVVAEGSGMTSGASTLTLGTK 246 G LV G+SAG + G G SGAS L G+K Sbjct: 36 GALVGAASGSSAGGSSRGGGSGSGASDLGAGSK 68
>ODP2_HUMAN (P10515) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit) (PDCE2) (E2) (Dihydrolipoamide S-acetyltransferase component Length = 614 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 247 FVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPV 348 FVPS AP + P+ A VPT + T IP+ Sbjct: 359 FVPSKVAPAPAAVVPPTGPGMAPVPTGVFTDIPI 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,281,516 Number of Sequences: 219361 Number of extensions: 1598572 Number of successful extensions: 4419 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4406 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
