Clone Name	baal8g17
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25	42	0.001
2	CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25	41	0.003
3	TOP1_RAT (Q9WUL0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoiso...	41	0.003
4	TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	41	0.003
5	TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	40	0.004
6	TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	40	0.005
7	UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor	40	0.006
8	SPP2_EMENI (Q5B4R9) Pre-mRNA-splicing factor spp2	40	0.006
9	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	40	0.006
10	PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helica...	39	0.008
11	TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	39	0.008
12	CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpresse...	39	0.011
13	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	39	0.011
14	SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S...	39	0.014
15	CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25	39	0.014
16	PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2....	39	0.014
17	CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpresse...	38	0.024
18	PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helica...	38	0.024
19	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	38	0.024
20	SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser...	38	0.024
21	CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpresse...	37	0.031
22	CROP_HUMAN (O95232) Cisplatin resistance-associated overexpresse...	37	0.031
23	SNWA_DICDI (P54705) Protein snwA	37	0.040
24	CCNL2_RAT (Q5I0H5) Cyclin-L2	37	0.053
25	CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enh...	37	0.053
26	IF2_STRMU (Q8DVP9) Translation initiation factor IF-2	37	0.053
27	CWC25_NEUCR (Q7SI59) Pre-mRNA-splicing factor cwc-25	36	0.069
28	ELOA1_DROME (Q9VCP0) Transcription elongation factor B polypepti...	36	0.069
29	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	36	0.069
30	SON_MOUSE (Q9QX47) SON protein	36	0.069
31	SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory eleme...	36	0.069
32	FIP1_BRARE (Q5XJD3) Pre-mRNA 3'-end-processing factor FIP1 (FIP1...	36	0.090
33	TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	36	0.090
34	TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	35	0.12
35	PININ_MOUSE (O35691) Pinin	35	0.12
36	FILA_HUMAN (P20930) Filaggrin	35	0.12
37	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	35	0.12
38	NCAP_FIPV (P25909) Nucleocapsid protein (N structural protein) (NC)	35	0.12
39	PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 ...	35	0.15
40	CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25	35	0.15
41	FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1...	35	0.15
42	FIP1_PONPY (Q5RAA7) Pre-mRNA 3'-end-processing factor FIP1 (FIP1...	35	0.15
43	FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1...	35	0.15
44	FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-l...	35	0.15
45	YMP2_CAEEL (Q10946) Hypothetical protein B0361.2	35	0.20
46	PRP5_CANAL (Q5ADL0) Pre-mRNA-processing ATP-dependent RNA helica...	35	0.20
47	CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel be...	34	0.26
48	CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 ...	34	0.26
49	LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (C...	34	0.26
50	SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (S...	34	0.26
51	CCNL1_BRARE (Q7ZVX0) Cyclin-L1	34	0.26
52	IF2_BUCAI (P57458) Translation initiation factor IF-2	34	0.34
53	VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Conta...	34	0.34
54	K0853_HUMAN (Q5T200) Protein KIAA0853	33	0.45
55	PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helica...	33	0.45
56	MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-depend...	33	0.58
57	NCAP_CVPRM (P24411) Nucleocapsid protein (N structural protein) ...	33	0.58
58	NCAP_CVPR8 (P33463) Nucleocapsid protein (N structural protein) ...	33	0.58
59	NCAP_CVPFS (P05991) Nucleocapsid protein (N structural protein) ...	33	0.58
60	LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2	33	0.58
61	ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12...	33	0.58
62	PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Fo...	33	0.58
63	CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5...	33	0.76
64	TAF2_DROME (Q24325) Transcription initiation factor TFIID subuni...	33	0.76
65	SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu...	33	0.76
66	DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-depend...	33	0.76
67	LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Le...	32	0.99
68	VITA2_XENLA (P18709) Vitellogenin A2 precursor (VTG A2) [Contain...	32	0.99
69	NCAP_CVPPU (P04134) Nucleocapsid protein (N structural protein) ...	32	0.99
70	RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-bindin...	32	0.99
71	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	32	0.99
72	IF2_BUCAP (Q8K9H1) Translation initiation factor IF-2	32	0.99
73	YOD2_CAEEL (P34594) Hypothetical protein ZC262.2	32	1.3
74	PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E...	32	1.7
75	Y170_BUCBP (Q89AS2) Hypothetical protein bbp_170 (yba2)	32	1.7
76	PBPA_BACSU (P39793) Penicillin-binding protein 1A/1B (PBP1) [Inc...	32	1.7
77	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	32	1.7
78	PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor ga...	32	1.7
79	CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5...	32	1.7
80	YR871_MIMIV (Q5UP41) Hypothetical protein R871	31	2.2
81	CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L)	31	2.2
82	IWS1A_XENLA (Q6DE96) IWS1-like protein A	31	2.2
83	RSD1_SCHPO (O13845) RNA-binding protein rsd1	31	2.2
84	CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E...	31	2.2
85	ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens...	31	2.2
86	UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB f...	31	2.2
87	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	31	2.2
88	PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helica...	31	2.9
89	HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)	31	2.9
90	HS90A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (T...	31	2.9
91	HS90A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86)	31	2.9
92	CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 ...	31	2.9
93	CWC25_SCHPO (Q9Y805) Pre-mRNA-splicing factor cwc25 (Complexed w...	31	2.9
94	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	31	2.9
95	HS90A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86) (F...	31	2.9
96	DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-...	31	2.9
97	NCAP_CVCAE (Q04700) Nucleocapsid protein (N structural protein) ...	31	2.9
98	CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC...	31	2.9
99	CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC...	31	2.9
100	HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (N...	31	2.9
101	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	31	2.9
102	MRP4_HUMAN (O15439) Multidrug resistance-associated protein 4 (M...	31	2.9
103	CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 ...	30	3.8
104	CWC25_DEBHA (Q6BNE1) Pre-mRNA-splicing factor CWC25	30	3.8
105	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	30	3.8
106	TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3....	30	3.8
107	PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	3.8
108	PHF3_HUMAN (Q92576) PHD finger protein 3	30	3.8
109	SNW1_MOUSE (Q9CSN1) SNW domain-containing protein 1 (Nuclear pro...	30	3.8
110	SNW1_HUMAN (Q13573) SNW domain-containing protein 1 (Nuclear pro...	30	3.8
111	FUTSC_DROME (Q9W596) Microtubule-associated protein futsch	30	4.9
112	CACB2_RABIT (P54288) Voltage-dependent L-type calcium channel be...	30	4.9
113	MOVP_TMV (P03583) Movement protein (Cell-to-cell transport prote...	30	4.9
114	IWS1_XENTR (Q505H7) IWS1-like protein	30	4.9
115	CACB2_RAT (Q8VGC3) Voltage-dependent L-type calcium channel beta...	30	4.9
116	CYP8_CAEEL (P52016) Peptidyl-prolyl cis-trans isomerase 8 (EC 5....	30	4.9
117	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	30	4.9
118	SWC5_CANAL (Q5A8H7) SWR1-complex protein 5	30	6.4
119	UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-bin...	30	6.4
120	UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-b...	30	6.4
121	SSRP_DROME (Q05344) Single-strand recognition protein (SSRP) (Ch...	30	6.4
122	CACB2_BOVIN (Q9MZL5) Voltage-dependent L-type calcium channel be...	30	6.4
123	IF2_STRA5 (Q8E1H3) Translation initiation factor IF-2	30	6.4
124	CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polyp...	30	6.4
125	CCD45_MOUSE (Q8BVV7) Coiled-coil domain-containing protein 45	30	6.4
126	XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl...	30	6.4
127	KNOB_PLAFD (P05229) Knob-associated histidine-rich protein (KAHR...	30	6.4
128	CCNL1_CHICK (Q5ZJP9) Cyclin-L1	30	6.4
129	CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25	29	8.4
130	MOVP_TMVOM (P03582) Movement protein (Cell-to-cell transport pro...	29	8.4
131	KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precu...	29	8.4
132	CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator...	29	8.4
133	UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-b...	29	8.4
134	KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precu...	29	8.4
135	BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog	29	8.4
136	DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-...	29	8.4
137	REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase re...	29	8.4
138	ARP_PLAFA (P04931) Asparagine-rich protein (Ag319) (ARP) (Fragment)	29	8.4

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>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQD-----------GGSLDVRSSKDNTRDRSLEKHCKE 359
           R+   D  +   HR  S+R HRS+            G   D R  +D   DR      ++
Sbjct: 195 RSRHEDEDAHRSHRHRSHR-HRSRSPLSPDRSDRKRGDDRDYRDERDRRDDR------RD 247

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRD-DSKGKKRFYEESVHNGDLEPRNAKEY 536
           EH   + R ++    D   D    DR SS+Y+D D +        S  +    PR    Y
Sbjct: 248 EHRGHDRRDDRRSERDRRADRGDEDRHSSRYKDRDDRYDHSTRRRSYADRSPSPRRGNHY 307

Query: 537 HGDSKRRSD 563
           + D +R  D
Sbjct: 308 Y-DRRRTED 315



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 3/176 (1%)
 Frame = +3

Query: 48  RHKDEESHRDERYKXXXXXXXXXXXXVKYKGERSXXXXXXXXXXXXXXXXXXXXPRNERS 227
           RH+DE++HR  R++             +   +R                      R++R 
Sbjct: 197 RHEDEDAHRSHRHRSHRHRSRSPLSPDRSDRKRGDDRDYRDERDR----------RDDRR 246

Query: 228 DNSSREKHRDD-SYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLH 404
           D       RDD      R  D G  D  SS+   RD   + H     +Y++ R    R  
Sbjct: 247 DEHRGHDRRDDRRSERDRRADRGDEDRHSSRYKDRDDRYD-HSTRRRSYAD-RSPSPRRG 304

Query: 405 DNEVDTFAADRRSSKYRDDSKGKKR--FYEESVHNGDLEPRNAKEYHGDSKRRSDV 566
           ++  D    + RS  Y  DS+   R  FY  +    + EPR++      S  R +V
Sbjct: 305 NHYYDRRRTEDRSDGYHRDSRNHDRPEFYRGNDRKVNKEPRDSNLRERSSNTRDEV 360



 Score = 36.6 bits (83), Expect = 0.053
 Identities = 29/115 (25%), Positives = 53/115 (46%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           + RS +   + HR   +R HR +    L   S   + R R  ++  ++E +  + R +++
Sbjct: 193 HRRSRHEDEDAHRSHRHRSHRHRSRSPL---SPDRSDRKRGDDRDYRDERDRRDDRRDEH 249

Query: 396 RLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRS 560
           R HD        DRRS + R   +G     +E  H+   + R+ + Y   ++RRS
Sbjct: 250 RGHDRR-----DDRRSERDRRADRG-----DEDRHSSRYKDRDDR-YDHSTRRRS 293

---

>CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25|
          Length = 415

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           PR +R  +  R++ +D  YR  R+      D RSS+D   D         + N     H+
Sbjct: 266 PRPDRRRDDRRDRDQDQDYRRDRNSRSSRRDARSSRDRDTDA-----FGRDRNRDRGSHS 320

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPR-----------NAKEY 536
           +N   D   D  A +    +       K+R  E   +  D+E               K+ 
Sbjct: 321 RNGNADANADQHAQELEEQR-------KRRLAEMQANAQDMEATRRQRVAEVTALEEKQR 373

Query: 537 HGDSKRRSDVG 569
             D KRRSD G
Sbjct: 374 EEDDKRRSDRG 384



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
 Frame = +3

Query: 231 NSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESR--------- 383
           +S  + HR  S+R+ R     S   R  KD+ R R  E H +  H   +           
Sbjct: 187 DSGNDSHR--SHRHRRRSRSRSRSPRVEKDDRRHRDRE-HDRRSHRDRDGERENRVERVY 243

Query: 384 HNKNRLHDNEVDTFAADRRSSKYRDDSKGKKR 479
           H+  R HD +     A RRS+  R D +   R
Sbjct: 244 HSSRRDHDRDERYDRAARRSASPRPDRRRDDR 275

---

>TOP1_RAT (Q9WUL0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           ++KH+D  +R+   +          KD  +DR   KH   EH  SE +H +     ++  
Sbjct: 25  KDKHKDREHRHKEHK----------KDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHK-- 72

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVH-NGDLEPRNAKE 533
             ++D+   K++D  K K++  EE +   GD + +  KE
Sbjct: 73  DGSSDKHKDKHKDRDKEKRK--EEKIRAAGDAKIKKEKE 109

---

>TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           ++KH+D  +R+   +          KD  +DR   KH   EH  SE +H +     ++  
Sbjct: 25  KDKHKDREHRHKEHK----------KDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHK-- 72

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVH-NGDLEPRNAKE 533
             ++++   K++D  K K++  EE V  +GD + +  KE
Sbjct: 73  DGSSEKHKDKHKDRDKEKRK--EEKVRASGDAKIKKEKE 109



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +3

Query: 321 NTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
           N   +  +KH   EH + E  H K    D E D   +   +S+++D  K  K   +    
Sbjct: 19  NDSHKHKDKHKDREHRHKE--HKK----DKEKDREKSKHSNSEHKDSEKKHKEKEKTKHK 72

Query: 501 NGDLEPRNAKEYHGDSKRRSD 563
           +G  E    K    D ++R +
Sbjct: 73  DGSSEKHKDKHKDRDKEKRKE 93

---

>TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           ++KH+D  +R+   +          KD  +DR   KH   EH  SE +H +     ++  
Sbjct: 25  KDKHKDREHRHKEHK----------KDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHK-- 72

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVH-NGDLEPRNAKE 533
             ++++   K++D  K K++  EE +  +GD + +  KE
Sbjct: 73  DGSSEKHKDKHKDRDKEKRK--EEKIRASGDAKIKKEKE 109



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +3

Query: 321 NTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
           N   +  +KH   EH + E  H K    D E D   +   +S+++D  K  K   +    
Sbjct: 19  NDSHKHKDKHKDREHRHKE--HKK----DKEKDREKSKHSNSEHKDSEKKHKEKEKTKHK 72

Query: 501 NGDLEPRNAKEYHGDSKRRSD 563
           +G  E    K    D ++R +
Sbjct: 73  DGSSEKHKDKHKDRDKEKRKE 93

---

>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 972

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +3

Query: 264 YRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRS 443
           + +H S    S    SSKD  RDR  E+  K  ++ S S+ +K+   D   D   +   S
Sbjct: 36  HHHHSSSSSSSKHKSSSKDKHRDR--EREHKSSNSSSSSKEHKSSSRDK--DRHKSSSSS 91

Query: 444 SKYRDDSKGKKRFYEESVH-NGDLEPRNAKEYHGDSKRRSDVG 569
           SK+RD  K K+R    + H +G       K+    SK +S  G
Sbjct: 92  SKHRD--KDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSG 132



 Score = 37.4 bits (85), Expect = 0.031
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRS-SKDNTRDR---SLEKHCKEEHNYSES 380
           ++    +SS  KHRD      + +DG S   RS S  + +D+   S  KH     ++  S
Sbjct: 82  KDRHKSSSSSSKHRDKD----KERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSGHHKRS 137

Query: 381 RHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRS 560
             +K R    + D       SS+++  S  + +    S H       ++K  H  S+  S
Sbjct: 138 SKDKER---RDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSS 194

Query: 561 DVGS 572
              S
Sbjct: 195 SSSS 198



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = +3

Query: 216 NERSDNSSREKHRD-DSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           + RS +SS  K +D  S   H+S  G     RSSKD  R        K+  + S SRH K
Sbjct: 107 SHRSGSSSSHKDKDGSSSSKHKSSSGH--HKRSSKDKER----RDKDKDRGSSSSSRH-K 159

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHG 542
           +     + +  ++  +SS     SK K   +  S H+     ++   Y G
Sbjct: 160 SSSSSRDKERSSSSHKSSSSSSSSKSK---HSSSRHSSSSSSKDHPSYDG 206

---

>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor|
          Length = 2316

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           P NE+  ++  E H + +   +  ++  S +V + +++  DR  E+   EE    E  + 
Sbjct: 114 PINEQDTSNHHETHLNQNATENHVKEE-SKEVSTEEESIEDRKTEESTTEESKAVEEANK 172

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP-------RNAKEYHGDS 548
           +N    N+  +   ++    Y+D+    K+  E   HN  +E        +N KE + +S
Sbjct: 173 ENTTEKNDEGSLDLEKEKDTYKDEKDNGKKKNELESHNHRIENKVEDNVYKNNKETNLES 232

Query: 549 KRRS 560
           K  +
Sbjct: 233 KNEN 236



 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 285 DGGSLDVRSSKD---NTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYR 455
           D GSLD+   KD   + +D   +K+  E HN+      ++ ++ N  +T    +  +  +
Sbjct: 180 DEGSLDLEKEKDTYKDEKDNGKKKNELESHNHRIENKVEDNVYKNNKETNLESKNENVNK 239

Query: 456 DD 461
           DD
Sbjct: 240 DD 241

---

>SPP2_EMENI (Q5B4R9) Pre-mRNA-splicing factor spp2|
          Length = 523

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R+   D  SR    DD+YRY   ++G S   RS   + R     K+  ++ +  + R+ +
Sbjct: 402 RDRDRDRDSRRLEYDDTYRYESRRNGSSRRDRSRSTSDRHSRRRKYEGDDGDRRDDRYYR 461

Query: 393 NRLHDNEVDTFAADR-----RSSKYRDDSKGKKRFYEESVHNGDLEPRNA---KEYHGDS 548
           +R  +   D    DR     R S+Y DD +    +Y  S  +     R+    ++   DS
Sbjct: 462 DRDRERRSDP-VRDRDRNRDRKSRYYDDDRNSS-WYSSSTASSKQRNRDRDRDRDNDRDS 519

Query: 549 KRR 557
           +RR
Sbjct: 520 RRR 522



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGS----LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNE 413
           K RDDS  +   +D  S     D    +D  RDR   +   ++    ESR N +   D  
Sbjct: 375 KKRDDSEDWKEERDRNSERSERDKDHHRDRDRDRDSRRLEYDDTYRYESRRNGSSRRDRS 434

Query: 414 VDTFAADRRSSKYRDDSKGKK--RFYEESVHNGDLEPRNAKEYHGDSKRR 557
             T     R  KY  D   ++  R+Y +       +P   ++ + D K R
Sbjct: 435 RSTSDRHSRRRKYEGDDGDRRDDRYYRDRDRERRSDPVRDRDRNRDRKSR 484

---

>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           PR  R D+  R++ RD   R  R +   S D    +D  R RS ++  +     ++ R  
Sbjct: 286 PRRRR-DSRDRDRDRDRDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDR 344

Query: 390 K-NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
           K +R  D    + + DR+  + R  SK +KR  + S  +   E R  KE     K+ ++
Sbjct: 345 KRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRS-RSRSPEKRRDKEDRKTEKKENE 402



 Score = 32.3 bits (72), Expect = 0.99
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
 Frame = +3

Query: 213 RNERSDNSSREKHRD---DSYRYHRSQD-------GGSLDVRSSKDNTRDRSLEKHCKEE 362
           R+   DN  R++ R    D  R  +S+D         S D +  K  +R RS EK   +E
Sbjct: 333 RSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKRRDKE 392

Query: 363 HNYSESRHNKNR--LHDNEVDTFAADRRSSKYRDDSKGKK------RFYEESVHNGDL 512
              +E + N+N   L +  ++  AA + SS   DD   +K          E + NGD+
Sbjct: 393 DRKTEKKENENESSLREKLLEKKAARKDSS---DDEWEEKPTPTNGEVKNEEIGNGDV 447

---

>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1186

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQ--DGGSLDVRSSKDN--TRDRSLEKHC--KEEHNYS 374
           R+ R D+      RDD   Y RS+  +    D    +D+   RDRSL++    ++E  Y 
Sbjct: 22  RSRRDDDRYERSRRDDGRSYRRSRSPEKRYRDRERDRDSYRRRDRSLDRRADYRDEDTYR 81

Query: 375 ESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKR 554
            SR +++R           DRR S+ RDD +  +R       + D + R+ ++   D  R
Sbjct: 82  PSRRDRSR-----------DRRRSRDRDDDRDYRR------RSRDRDFRSRRDDSRDRAR 124

Query: 555 R 557
           R
Sbjct: 125 R 125



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRY-HRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           R +RS +  R + RDD   Y  RS+D    D RS +D++RDR+  +         +SR +
Sbjct: 84  RRDRSRDRRRSRDRDDDRDYRRRSRD---RDFRSRRDDSRDRARRRTDDSADLKHKSRRD 140

Query: 390 KNRLHDNEVDTFAADRRSSK 449
            +R  +   D+    R +SK
Sbjct: 141 DSR--ERARDSVPRSREASK 158

---

>TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           ++KH+D  +R+   +          KD  +DR   KH   EH  SE +H +         
Sbjct: 25  KDKHKDREHRHKEHK----------KDKDKDREKSKHSNSEHKDSEKKHKEKE------K 68

Query: 420 TFAADRRSSKYRDDSK--GKKRFYEESVH-NGDLEPRNAKE 533
           T   D  S K++D  K   K+R  EE +   GD + +  KE
Sbjct: 69  TKHKDGSSEKHKDKHKDRDKERRKEEKIRAAGDAKIKKEKE 109



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +3

Query: 321 NTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
           N   +  +KH   EH + E  H K++  D E       + S+    DS+ K +  E++ H
Sbjct: 19  NDSHKHKDKHKDREHRHKE--HKKDKDKDRE-----KSKHSNSEHKDSEKKHKEKEKTKH 71

Query: 501 -NGDLEPRNAKEYHGDSKRRSD 563
            +G  E    K    D +RR +
Sbjct: 72  KDGSSEKHKDKHKDRDKERRKE 93

---

>CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R +RS + SR   R    R  RS+D        S+D  R RS ++     H+ SE +H +
Sbjct: 289 RRKRSRSRSRHSSRTSDRRCSRSRDHKR---SRSRDRRRSRSRDRRRSRSHDRSERKH-R 344

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKK--RFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
           +R  D      + DR+S K+R  S+ ++  R  +E    G  + +++ +     K+  D
Sbjct: 345 SRSRDRRRSK-SRDRKSYKHRSKSRDREQDRKSKEKEKKGSDDKKSSVKSSSREKQSED 402

---

>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           +E+    SR++ R+D  ++HR +D G  D        RDR+ ++  ++  +    R   +
Sbjct: 283 HEQPRERSRDRPRED--KHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTS 340

Query: 396 RLHDNEVD-TFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
           R HD +       D    +Y  +  G+ R   ++ + G  EP   + Y+ D +  +D
Sbjct: 341 RDHDRDRSRKKERDYEGGEYEHEGGGRSR-ERDAEYRG--EPEETRGYYEDDQGDTD 394

---

>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E     S E+    S  + RS+   S    S   + R RS  KH    HN S SR    R
Sbjct: 181 EPESGKSNERKGGRSRSHTRSKSRSS----SKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 236

Query: 399 --LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
                ++  + + +RR S+ R  S+ K++   E V     E    KE   +  R  D
Sbjct: 237 RSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKD 293

---

>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25|
          Length = 520

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +3

Query: 267 RYHRSQDGGSLDVRSSKDNTRDRSLEK--HCKEEHNYSESRHNKNRLHDNEVDTFAADRR 440
           R  + Q G   D +S  +  R +  ++  H ++EH    SRH ++R          ++ R
Sbjct: 252 RQLKMQAGIDTDTQSKDERRRSKEEKRRRHDRDEHRRRGSRHGESR----------SESR 301

Query: 441 SSKYRDDSKGKKRFYEESV---HNGDLEPRNAKEYHGDSKR 554
           S   RDD   K  + E S    H+GD E R+ K +  D  R
Sbjct: 302 SHSRRDDRDRKSSWNEGSSSRRHDGDEERRSLKRHRDDQDR 342



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRL 401
           RS    R +H  D +R   S+ G S     S     DR        +   S +  + +R 
Sbjct: 272 RSKEEKRRRHDRDEHRRRGSRHGESRSESRSHSRRDDR--------DRKSSWNEGSSSRR 323

Query: 402 HDNEVDTFAADRRSSK-YRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDV 566
           HD +      +RRS K +RDD    +  YE  +H+ D + R A   + D + +  V
Sbjct: 324 HDGD-----EERRSLKRHRDDQDRDRHRYERRLHDAD-DSRPASRSNRDRRDKDAV 373

---

>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)|
           (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G)
           (Cyclophilin G) (Matrin cyclophilin) (Matrin-cyp)
          Length = 752

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDN-TRDRSLEKHCKEEHNYSESRHN 389
           R  RS +  R++ R   Y  +R Q+        S+D  T  RS  K  +     S S   
Sbjct: 572 RRVRSRSHDRDRSRSKEYHRYREQEYRRRGRSRSRDRRTPGRSRSKDRRRRRRDSRSSER 631

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
           +     N+    + D +SS  +++S+G+KR Y +S
Sbjct: 632 EESQSRNKEKYRSQDSKSSHRKENSEGEKRMYSKS 666



 Score = 37.0 bits (84), Expect = 0.040
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           R   +DD Y  ++ +  G       K  +R +S E+   +E +   SRH   R+     +
Sbjct: 438 RNSEKDDKYNKNKVKKRG-------KSKSRSKSKERSKSKERDSKHSRHEDKRVRSRSKE 490

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVHNG-DLEPRNAKEYHGDSKRR 557
                 +  + + DSKGK +    S  N   +E ++ +  H  SK +
Sbjct: 491 RDHETTKEKEKQLDSKGKDQERSRSKENSKQVESKSNEHDHSKSKEK 537



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
 Frame = +3

Query: 213 RNERSDNSSRE------KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYS 374
           ++ R+ + SRE      KH  +S    RS+         S+ + RDRS     KE H Y 
Sbjct: 537 KDRRAQSRSRERDLTKSKHSYNSRTRERSRSRDRSRRVRSRSHDRDRS---RSKEYHRYR 593

Query: 375 ES---RHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
           E    R  ++R  D      +  +   + R DS+  +R  EES      + RN ++Y   
Sbjct: 594 EQEYRRRGRSRSRDRRTPGRSRSKDRRRRRRDSRSSER--EES------QSRNKEKYRSQ 645

Query: 546 SKRRS 560
             + S
Sbjct: 646 DSKSS 650

---

>CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R +RS + SR   R    R  RS+D        S++  R RS ++     H+ SE +H +
Sbjct: 289 RRKRSRSRSRHSSRTSDRRCSRSRDHKR---SRSRERRRSRSRDRRRSRSHDRSERKH-R 344

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKK--RFYEESVHNGDLEPRNAKEYHGDSKRRSDV 566
           +R  D      + DR+S K+R  S+ ++  R  +E    G  + +++ +     K+  D 
Sbjct: 345 SRSRDRRRSK-SRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSSSREKQSEDT 403

Query: 567 GS 572
            +
Sbjct: 404 NT 405



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
 Frame = +3

Query: 213 RNERSDNSSREKHRD-DSYRYHRSQDGGSLDVRSS-------KDNTRDRSLEKHCKEEHN 368
           R  R +   REK R  D  R  RS+       R+S       +D+ R RS E+      +
Sbjct: 270 RKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRD 329

Query: 369 YSESR-HNKN-RLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHG 542
              SR H+++ R H +     + DRR SK RD    K R   +S           KE  G
Sbjct: 330 RRRSRSHDRSERKHRSR----SRDRRRSKSRDRKSYKHR--SKSRDREQDRKSKEKEKRG 383

Query: 543 DSKRRSDVGS 572
              ++S V S
Sbjct: 384 SDDKKSSVKS 393

---

>PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1211

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDD--SYRYHRSQDGGSLDVRSSKDNTRDRSLEKH--CKEEHNYSES 380
           R+ R D+   +  RDD  SYR  RS +    D        RDRS+++    ++E +Y  S
Sbjct: 22  RSRRDDDRYEKSRRDDLRSYRRSRSPERRYRDRDRDSYRRRDRSVDRRDDHRDEDSYRSS 81

Query: 381 RHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKR 479
           R +++R           DRR S+ R D +  +R
Sbjct: 82  RRDRSR-----------DRRRSRDRGDDRDHRR 103



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 32/111 (28%), Positives = 43/111 (38%)
 Frame = +3

Query: 231 NSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDN 410
           +SSR   RDD  RY +S+     D+RS +   R RS E+       Y +   +  R  D 
Sbjct: 18  SSSRRSRRDDD-RYEKSRRD---DLRSYR---RSRSPERR------YRDRDRDSYRRRDR 64

Query: 411 EVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
            VD     R    YR   + + R    S   GD      K    D + R D
Sbjct: 65  SVDRRDDHRDEDSYRSSRRDRSRDRRRSRDRGDDRDHRRKSRERDYRSRRD 115

---

>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
 Frame = +3

Query: 225 SDNSSREKHRDDSYRYHRSQDG-GSLDVRS-----SKDNTRDRSLEKHCKEEHNYSESR- 383
           S   SR K +D +    ++ D  G    RS     SK  +R RS E+  +EE   S SR 
Sbjct: 261 SAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRG 320

Query: 384 --------HNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYH 539
                    +++R   ++  + +  R  SK +D  KG+KR  EES        ++ +   
Sbjct: 321 RSQEKSLRQSRSRSR-SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRK 379

Query: 540 GDSKRRSDVGS 572
             SKR S  GS
Sbjct: 380 RGSKRDSKAGS 390

---

>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E     S E+    S  + RS+   S    S   + R RS  KH    HN S SR  K+R
Sbjct: 181 EPESGKSNERKGGRSRSHTRSKSRSS----SKSHSRRKRSQSKHRSRSHNRSRSR-QKDR 235

Query: 399 LHD---NEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
                 ++  + + +RR S+ R  S+ K++   E V     E    KE   + +R  D
Sbjct: 236 ARSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEREREKEKEREKEREKD 293



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 28/117 (23%), Positives = 48/117 (41%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           P  +RS +  R K R  S    + +D         K+  R++  E+  KE     E   N
Sbjct: 241 PHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEREREKEKERE-KEREKDKERGKN 299

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRS 560
           K++  + E D    +R   K ++  K K+R   E   + + + +  KE    +  RS
Sbjct: 300 KDKDREKEKD-HEKERDKEKEKEQDKDKER---EKDRSKEADEKRKKEKKSRTPPRS 352

---

>CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 32/120 (26%), Positives = 53/120 (44%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R +RS + SR   R    R  RS+D        S++  R RS ++     H+ SE +H +
Sbjct: 289 RRKRSRSRSRHSSRTSDRRCSRSRDHKR---SRSRERRRSRSRDRRRSRSHDRSERKH-R 344

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
           +R  D      + DR+S K+R  S+ +++  +             KE  G   ++S V S
Sbjct: 345 SRSRDRRRSK-SRDRKSYKHRSKSRDREQDRKS----------KEKEKRGSDDKKSSVKS 393

---

>CROP_HUMAN (O95232) Cisplatin resistance-associated overexpressed protein|
           (cAMP regulatory element associated protein 1)
           (CRE-associated protein 1) (CREAP-1) (Luc7A) (Okadaic
           acid-inducible phosphoprotein OA48-18)
          Length = 432

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 32/120 (26%), Positives = 53/120 (44%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R +RS + SR   R    R  RS+D        S++  R RS ++     H+ SE +H +
Sbjct: 289 RRKRSRSRSRHSSRTSDRRCSRSRDHKR---SRSRERRRSRSRDRRRSRSHDRSERKH-R 344

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
           +R  D      + DR+S K+R  S+ +++  +             KE  G   ++S V S
Sbjct: 345 SRSRDRRRSK-SRDRKSYKHRSKSRDREQDRKS----------KEKEKRGSDDKKSSVKS 393

---

>SNWA_DICDI (P54705) Protein snwA|
          Length = 685

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
 Frame = +3

Query: 210 PRNERSDNSSREK--------HRDDSYRYHRSQDGGSLDVRSSKDN--TRDRSLEKHCKE 359
           P N RS + S E+          DD YR   ++D    D   S+DN  +RD    +  ++
Sbjct: 391 PMNRRSRSRSTERIPSRNDNDDDDDRYRIKDNRDNRGRDNIDSRDNRDSRDSRDSRDSRD 450

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRF 482
             +  +SR N+    D+       D R ++ RDDS  + R+
Sbjct: 451 SRDSRDSRDNR----DSRDSRDNRDNRDNRRRDDSNDRDRY 487

---

>CCNL2_RAT (Q5I0H5) Cyclin-L2|
          Length = 520

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
 Frame = +3

Query: 135 KGERSXXXXXXXXXXXXXXXXXXXXPRNERSDNSS---------REKHRDDS--YRYHRS 281
           KG+ S                    P+  +SD+ S         R + R DS   + HR 
Sbjct: 375 KGQESRSQSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDSPPRQVHRG 434

Query: 282 QDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDD 461
                 +VR S+ +   + L +   +  + S SR +++R  +    +    ++S  YRD 
Sbjct: 435 APYKGSEVRGSRKSKDCKHLTQKPHKSRSRSSSR-SRSRSRERTDSSGKYKKKSHYYRDQ 493

Query: 462 SKGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
            + + R YE + H      R  +++ G S+ R
Sbjct: 494 RRERSRSYERTGH------RYERDHPGHSRHR 519

---

>CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced|
           expression protein) (PCEE)
          Length = 518

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
 Frame = +3

Query: 135 KGERSXXXXXXXXXXXXXXXXXXXXPRNERSDNSS---------REKHRDDS--YRYHRS 281
           KG+ S                    P+  +SD+ S         R + R DS   + HR 
Sbjct: 373 KGQESRSQSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDSPPRQVHRG 432

Query: 282 QDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDD 461
                 +VR S+ +   + L +   +  + S SR +++R  +   ++    ++S  YRD 
Sbjct: 433 APYKGSEVRGSRKSKDCKYLTQKPHKSRSRSSSR-SRSRSRERTDNSGKYKKKSHYYRDQ 491

Query: 462 SKGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
            + + R YE + H      R  +++ G S+ R
Sbjct: 492 RRERSRSYERTGH------RYERDHPGHSRHR 517

---

>IF2_STRMU (Q8DVP9) Translation initiation factor IF-2|
          Length = 916

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +3

Query: 294 SLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGK 473
           ++D R  K    D+S +   + E    +++H KNR   N+V       R+ K  + +K  
Sbjct: 255 AVDTRRKKQARPDKSRDFSHENEDGPKQNKHKKNRNKQNQV-------RNQKNSNWNKKN 307

Query: 474 KRFYEESVHNGDLEPRNAKEYH 539
           K+      HN +L+P   +++H
Sbjct: 308 KKSKNNRNHNANLKPVTERKFH 329



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           RN +++  +R K   +     R Q+ G    ++   N R +    H  ++   +++R+N+
Sbjct: 96  RNFKAEREARAKAEAE-----RRQNNGERRNQNKGQNNRQKDNRNHGSQDRR-NDNRNNR 149

Query: 393 NRLHDNEVD 419
           NR +DN  D
Sbjct: 150 NRQNDNRRD 158

---

>CWC25_NEUCR (Q7SI59) Pre-mRNA-splicing factor cwc-25|
          Length = 444

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESR---HNKNRLHDN 410
           R KHR   +R  R +D    D    +D+ RDR  ++H +   + S  R    +  R  D+
Sbjct: 188 RHKHRSHHHRSDRHRDR---DDDRDRDSARDRDRDRHSRRRRSDSRDRSRSRSPRRRSDS 244

Query: 411 EVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEY---HGDSKRRS 560
           E D     RR S   D ++ + R    S  N D +   ++ +    G S+ RS
Sbjct: 245 EEDRSKQRRRDSP--DRTRRRDRDQSRSRGNRDRDDDRSRRHRFPQGRSRSRS 295

---

>ELOA1_DROME (Q9VCP0) Transcription elongation factor B polypeptide 3 (RNA|
           polymerase II transcription factor SIII subunit A)
           (Elongin A) (dEloA)
          Length = 643

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = +3

Query: 213 RNERSDNSS-REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSE---S 380
           ++ R D S  R+K R+        ++  S     SKD+++  S  K  K E + SE   S
Sbjct: 160 KSSRHDKSKDRDKDREGQKEAKEHKEKKSNGEHKSKDSSKSSSSHKSSKSESHKSEHTKS 219

Query: 381 RHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRS 560
           +H K++   +E+     D+ S      SK  KR +    H  + E + AK     SK   
Sbjct: 220 KHEKDKTSHSELKE-VKDKSSKHKSSSSKSSKRSHSPPRH--EEESQKAKIPKVKSKSEE 276

Query: 561 D 563
           D
Sbjct: 277 D 277



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = +3

Query: 213 RNERSDNS-SREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           ++ERS +S S  K R DS + H+S         S  D ++DR      K+     E++ +
Sbjct: 138 KHERSSSSRSHSKSRSDSDKKHKS---------SRHDKSKDRD-----KDREGQKEAKEH 183

Query: 390 KNRLHDNEVDTFAADRRSSKYRDD-SKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDV 566
           K +  + E  +  + + SS ++   S+  K  + +S H  D      K  H + K   D 
Sbjct: 184 KEKKSNGEHKSKDSSKSSSSHKSSKSESHKSEHTKSKHEKD------KTSHSELKEVKDK 237

Query: 567 GS 572
            S
Sbjct: 238 SS 239



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           NE     ++    D              D+ +SK  ++     KH   E + S   H+K+
Sbjct: 95  NEEDSGKTKSSDEDPDQENKGGNSSSGEDLNTSKHKSKHAKSTKH---ERSSSSRSHSKS 151

Query: 396 RLHDNEVDTFAADRRSSKYRD-DSKGKK--RFYEESVHNGDLEPRNAKE---YHGDSKRR 557
           R  D++    ++    SK RD D +G+K  + ++E   NG+ + +++ +    H  SK  
Sbjct: 152 R-SDSDKKHKSSRHDKSKDRDKDREGQKEAKEHKEKKSNGEHKSKDSSKSSSSHKSSKSE 210

Query: 558 S 560
           S
Sbjct: 211 S 211

---

>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 29/96 (30%), Positives = 40/96 (41%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R +R  + SR + R       RS+D        S+D +RDRS E+  + E   S SR  +
Sbjct: 102 RGDRGRSRSRSRDRGRDRSRDRSRD-------RSRDRSRDRSRERSRERERTRSRSRSPQ 154

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
            R           DR  SK R  S+ + R    S H
Sbjct: 155 ER-----------DRSHSKSRSRSRSRSRSRSASPH 179

---

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +3

Query: 213  RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
            +N+  D   +EK RD S R            RS +  + +    K   E  + +  R +K
Sbjct: 1790 KNKNRDKGEKEKKRDSSLRS-----------RSKRSKSSEHKSRKRTSESRSRARKRSSK 1838

Query: 393  NRLHDNEVDTFAADRR---SSKYRDDSKGKKRFYEE 491
            ++ H ++  + +  RR   SS+ R  S+G++   +E
Sbjct: 1839 SKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKE 1874

---

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +3

Query: 213  RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
            +N+  D   +EK RD S R            RS +  + +    K   E  + +  R +K
Sbjct: 1805 KNKNRDKGEKEKKRDSSLRS-----------RSKRSKSSEHKSRKRTSESRSRARKRSSK 1853

Query: 393  NRLHDNEVDTFAADRR---SSKYRDDSKGKKRFYEE 491
            ++ H ++  + +  RR   SS+ R  S+G++   +E
Sbjct: 1854 SKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKE 1889

---

>FIP1_BRARE (Q5XJD3) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 570

 Score = 35.8 bits (81), Expect = 0.090
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGG---SLDVRSSKDNTR------DRSLEKHCKEEHNY 371
           ER     RE+ RD  +    S + G   S+ + S ++  R      DR  E+H +     
Sbjct: 442 EREKERERERQRDRGHERDHSPNAGPYNSMAMCSDEERYRSYRDYGDRGYERHRERASRE 501

Query: 372 SESRHNKNRLHDNEVDTFAADRRSSKYRDDSK 467
            E RH   R  + E     + R SS+ R +S+
Sbjct: 502 KEERHGGRRHREKEEGRHKSSRSSSRRRHESE 533

---

>TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 765

 Score = 35.8 bits (81), Expect = 0.090
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           ++KH+D  +R+   +              +DR   KH   EH  SE +H +     ++  
Sbjct: 25  KDKHKDREHRHKEHK------------KEKDREKSKHSNSEHKDSEKKHKEKEKTKHK-- 70

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVH-NGDLEPRNAKE 533
             ++++   K++D  K K++  EE V  +GD + +  KE
Sbjct: 71  DGSSEKHKDKHKDRDKEKRK--EEKVRASGDAKIKKEKE 107

---

>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 829

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQD------------GGSLDVRSSKDNTRDRSLEKHCKEE 362
           E+      EKHRD     HR +D             G + V+     +    ++   +++
Sbjct: 127 EKHKEKDVEKHRDGEKHKHRDKDREKKKEEKMKSSSGGVKVKKENGFSSPVRVKDEPEDQ 186

Query: 363 HNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHG 542
             Y   + NK      E D     ++  K  DD KGKKR  EE     D++P+   +  G
Sbjct: 187 GFYVSPKENKAMKRPREDDEDYKPKKI-KSEDDKKGKKRKQEEE----DIKPKKKSKAKG 241

Query: 543 DSK 551
           + +
Sbjct: 242 NEE 244



 Score = 34.7 bits (78), Expect = 0.20
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNT--RDRSLEKHCKEEHNYSESRHNKNRLHDNEVD 419
           KH+ D    H+         +S  +N+  RD S +KH  +  N  + R      H     
Sbjct: 23  KHKKDKEHRHKEHKKDKDREKSKHNNSEHRDPSEKKHKDKHKNNDKHREKDGEKHRERDG 82

Query: 420 TFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDV 566
               D+   K+RD  K K++  E+   + ++E    K+  G+  +  DV
Sbjct: 83  EKHRDKNGEKHRDGEKHKEKDIEK---HKEVEKHRVKD--GEKHKEKDV 126



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 30/121 (24%), Positives = 51/121 (42%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           +  +  + + +KHR+     HR +DG   +    K+  + R  EKH KE+         K
Sbjct: 57  KKHKDKHKNNDKHREKDGEKHRERDG---EKHRDKNGEKHRDGEKH-KEKDIEKHKEVEK 112

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
           +R+ D E      ++   K+++    K R  E+  H  D +    KE     K +S  G 
Sbjct: 113 HRVKDGEKH---KEKDVEKHKEKDVEKHRDGEKHKHR-DKDREKKKE----EKMKSSSGG 164

Query: 573 V 575
           V
Sbjct: 165 V 165

---

>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           + RS +SS       S     S+D  S    SS+  +R R    +   +H  S  R  ++
Sbjct: 610 SSRSSSSSSSSTSGSS-----SRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSMDRKRRD 664

Query: 396 -----RLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSK 551
                R H +     + DR+ SK +     +KR   ES  +G    R+ ++   D K
Sbjct: 665 TSGLERSHKSSKGGSSRDRKGSKDKSSRPDRKRSISESSRSGKRSSRSERDRKSDRK 721

---

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
 Frame = +3

Query: 225  SDNSSREKHRDDSYRY----HRSQDGGSLDVRSSKDNTR-------DRSLEKHCKEEHNY 371
            S +S  E+H DDS R      R+  G S +   S+D +R       DR+   H  +    
Sbjct: 1271 SQDSDSERHSDDSERLSGSASRNHHGSSRE--QSRDGSRHPGFHQEDRASHGHSADSSRQ 1328

Query: 372  SESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSK 551
            S + H ++  H   V +    R S   R  S+  ++  + S H+G +  R A     DS 
Sbjct: 1329 SGTHHTESSSHGQAVSSHEQARSSPGERHGSR-HQQSADSSRHSG-IGHRQASSAVRDSG 1386

Query: 552  RRSDVGS 572
             R   GS
Sbjct: 1387 HRGSSGS 1393



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
 Frame = +3

Query: 225 SDNSSREKHRDDSYRY--------HRSQDGGSLD-VRSSKDNTRDRSLEKHCKEEHNYSE 377
           S +S  + H +DS R+        H S    S D  R  + +  DR+   H  +    S 
Sbjct: 622 SQDSDSQGHSEDSERWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSADSSRKSG 681

Query: 378 SRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNG 506
           +RH +N        +    R S+  R  S+ + +  + S H+G
Sbjct: 682 TRHTQNSSSGQAASSHEQARSSAGERHGSRHQLQSADSSRHSG 724

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 24/102 (23%), Positives = 40/102 (39%)
 Frame = +3

Query: 231 NSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDN 410
           +S+R++H    YR HRS    S + R     +R  +   +     + S SR  +NR    
Sbjct: 245 HSNRDEHSSRGYRNHRS----SRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300

Query: 411 EVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEY 536
           E   +A   R   YRD    ++       +      R  ++Y
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDY 342

---

>NCAP_FIPV (P25909) Nucleocapsid protein (N structural protein) (NC)|
          Length = 377

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           L+V  S++N+R  S  +      + S  RH+ N  ++N  DT  A        D  + + 
Sbjct: 151 LEVNRSRNNSRSGSQSRSVSRNRSQSRGRHHSNNQNNNVEDTIVAVLEKLGVTDKQRSRS 210

Query: 477 RFYEESVHN-GDLEPRNAKEY 536
           +  E S     D  P+NA ++
Sbjct: 211 KPRERSDSKPRDTTPKNANKH 231

---

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           + R D   +   R D+  +H  QD      R S D+TRDRS ++  +   +  +   +++
Sbjct: 388 DRRHDRRDQPTARGDTSSWHSRQDS-ERSYRESNDDTRDRSNKRSRRHHDDVPQQSRSRS 446

Query: 396 RLHDNEVDTFAADRRSSKYRDDSKGKKRF-YEESVHNGDLEPRNAKEYHGDSKRRSD 563
             HD+  D       S   R   +G+ +  YE   H    E     +    + RR +
Sbjct: 447 ERHDSHRD-HERHHLSRHVRPSDEGESKCRYEAHSHTRHDEHTRRHDSSSTAARRDE 502



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRL 401
           R D+SS    RD+  R  RS        R  +D  RDR  ++  + EH     R    R 
Sbjct: 490 RHDSSSTAARRDEDRRSERS--------RHDRDRDRDRDRDRDREREH---RRRTEDRRR 538

Query: 402 HDNEVDTFAADRR 440
           HD+   +    RR
Sbjct: 539 HDDRQRSRDGSRR 551

---

>CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25|
          Length = 393

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/112 (25%), Positives = 43/112 (38%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           ++ D S R++ R      HRS DG     R  +  +R +S     +      E RH + R
Sbjct: 172 DKKDKSRRKEDRHRRRHRHRSADGEDRHHRRRRSYSRSQS----PRRRDGSREDRHRRRR 227

Query: 399 LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKR 554
                    + DR S + RD S  + R   ++   GD    +    H D  R
Sbjct: 228 -------DDSRDRHSRRRRDGSDEEGRRDRDNRSGGDRHRHDGDRRHSDEPR 272



 Score = 33.5 bits (75), Expect = 0.45
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
 Frame = +3

Query: 222 RSDNSSREKHR---DDSYRYH--RSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRH 386
           R D S  ++HR   DDS   H  R +DG   + R  +DN      ++H          RH
Sbjct: 214 RRDGSREDRHRRRRDDSRDRHSRRRRDGSDEEGRRDRDNRSGG--DRH----------RH 261

Query: 387 NKNRLHDNEV-DTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
           + +R H +E  D    +RR  + RD++    R Y    +  D  PR+ +E
Sbjct: 262 DGDRRHSDEPRDERRDNRRDERPRDNN----RQYSRRSYPSDRRPRHNEE 307



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRH- 386
           PR+ER DN   E+ RD++ +Y R         R ++++ + +  E+  K     S +   
Sbjct: 271 PRDERRDNRRDERPRDNNRQYSRRSYPSDRRPRHNEEDDKAKEEERQRKLAAMQSAATEL 330

Query: 387 ---NKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKR 554
               + RL D E    AA    +K R+  +G  R +   +H    E +   E  G ++R
Sbjct: 331 DVDRQERLADLEKREQAAREADNKARE--RGGDRGFVNKLHQ-QAEHKGLAERMGGARR 386

---

>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
           (Factor interacting with PAP) (hFip1) (Rearranged in
           hypereosinophilia)
          Length = 594

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDS------------YRYHRSQDGGSLDVRSSKDNT-RDRSLEKHCKE 359
           ER     RE+ RD S            YRY    + G    R+S++   R R      KE
Sbjct: 478 ERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKE 537

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           E  +  SR N  R H++E        +  K +   +GK+
Sbjct: 538 ETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE 576

---

>FIP1_PONPY (Q5RAA7) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 588

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDS------------YRYHRSQDGGSLDVRSSKDNT-RDRSLEKHCKE 359
           ER     RE+ RD S            YRY    + G    R+S++   R R      KE
Sbjct: 472 ERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKE 531

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           E  +  SR N  R H++E        +  K +   +GK+
Sbjct: 532 ETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE 570

---

>FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 581

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDS------------YRYHRSQDGGSLDVRSSKDNT-RDRSLEKHCKE 359
           ER     RE+ RD S            YRY    + G    R+S++   R R      KE
Sbjct: 465 ERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKE 524

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           E  +  SR N  R H++E        +  K +   +GK+
Sbjct: 525 ETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE 563

---

>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 536

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDS------------YRYHRSQDGGSLDVRSSKDNT-RDRSLEKHCKE 359
           ER     RE+ RD S            YRY    + G    R+S++   R R      KE
Sbjct: 420 ERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKE 479

Query: 360 EHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           E  +  SR N  R H++E        +  K +   +GK+
Sbjct: 480 ETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE 518

---

>YMP2_CAEEL (Q10946) Hypothetical protein B0361.2|
          Length = 460

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +3

Query: 225 SDNSSREKHRDDSYR----YHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           S  S  ++H + S R    Y +SQD  S+ VR  K  T    L    +     S  + +K
Sbjct: 138 SRRSDSDRHGEGSSRMRREYEKSQDLDSM-VREEKTGTAGDQLRLFER-----SLIKSSK 191

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESV 497
            R HD+E     A+ +  K + D K KKR  +ES+
Sbjct: 192 IRRHDDESVDDIAEMQKGKKKSDEKDKKRKEKESI 226

---

>PRP5_CANAL (Q5ADL0) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 884

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 294 SLDVRSSKDNTRDRSLEKHCKEEHNYSE-SRHNKNRLHDNEVDTFAADRRSSKYR-DDSK 467
           +LD    +D+ ++       K    Y E S H  ++  ++E+D F A  R S+ + D++K
Sbjct: 124 NLDFGDDEDDRKNSHRPVFKKPSLEYDEISEHQNDKESEDELDVFLASIRESELKSDNTK 183

Query: 468 GKKRFYEESVHNGDLE-PRNAKEYHGDSKRRSD 563
            +K    ES+  GD+E  +   +Y GD     +
Sbjct: 184 AEKAI--ESIPEGDVENEKENDDYGGDGDEEDE 214

---

>CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit) (Lambert-Eaton myasthenic syndrome antigen B)
           (MYSB)
          Length = 660

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR-------SLEKHCKEEHN 368
           P +     +SR   R +++     +   S  V   +D + D            H  E H 
Sbjct: 537 PHHNHRSGTSRGLSRQETFDSETQESRDSAYVEPKEDYSHDHVDHYASHRDHNHRDETHG 596

Query: 369 YSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
            S+ RH ++R    +VD        +K R   K K R+ E+       +   A E++ D
Sbjct: 597 SSDHRHRESRHRSRDVDREQDHNECNKQRSRHKSKDRYCEKDGEVISKKRNEAGEWNRD 655

---

>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD1) (CHD-1)
          Length = 1709

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +3

Query: 234  SSREKHR---DDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLH 404
            S REKHR   D   R HRS   GSL  RS  D+ R  S  +   +  + SE  H+K+   
Sbjct: 1599 SDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDH-RSHSDHRLHSDHRSSSEYTHHKSSRD 1657

Query: 405  DNEVDTFAADRRSSKYRDDSKGKKRFY-EESVHNGDLEPRNAKEYHGDSKR 554
                  +  D R+S     S   +R Y   S     +E ++  E+   S++
Sbjct: 1658 YRYHSDWQMDHRASSSGPRSPLDQRSYGSRSPFEHSVEHKSTPEHTWSSRK 1708

---

>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)|
          Length = 392

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
 Frame = +3

Query: 213 RNERSDNSSREK-------------HRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHC 353
           R E  +   REK              R   +R HRS+       R  K  TR +S EK  
Sbjct: 246 RREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMS----RERKRRTRSKSREK-- 299

Query: 354 KEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
           +  H    S  +++R H          R SS+ R   + K+R  +E   + DL  R+   
Sbjct: 300 RHRHRSRSSSRSRSRSHQR-------SRHSSRDRSRERSKRRSSKERFRDQDLASRDRDR 352

Query: 534 YHGDSKRR 557
              D   R
Sbjct: 353 SSRDRSPR 360



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGS--LDVRSSKDNTRDRSLEKHCKEEHNYSES----- 380
           RS +SSR + R      H S+D        RSSK+  RD+ L    ++  +   S     
Sbjct: 304 RSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASRDRDRSSRDRSPRDRD 363

Query: 381 RHNKNRLHDNEVDTFAADRRSSKYRD 458
           R +K R +++  +  + DRRSS+ R+
Sbjct: 364 RKDKKRSYES-ANGRSEDRRSSEERE 388

---

>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E     S E+    S  + RS+   S    S   + R RS  KH    HN S SR    R
Sbjct: 178 EPESGKSNERKGGRSRSHTRSKSRSS----SKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 233

Query: 399 --LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
                ++  + + +RR S+ R  S+ K++   E +     E    KE   + +R  +
Sbjct: 234 RSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIK----EKERVKEKDREKERERE 286

---

>CCNL1_BRARE (Q7ZVX0) Cyclin-L1|
          Length = 498

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           RS ++SRE+ RD  +  H+ +  GS      +D  RDRS +    +  + S S H+ +R
Sbjct: 437 RSRSNSRERVRDRDHIKHKQERSGSGHHWDHRDRERDRSRDHGRNKRQSRSHSGHSHSR 495

---

>IF2_BUCAI (P57458) Translation initiation factor IF-2|
          Length = 864

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKD-NTRDRSLEK--HCKEEHNYSESRHNK 392
           + +   R  H+++   YH +     L  R ++D N R+  ++K  H +   NY + ++NK
Sbjct: 182 KENKDIRISHKEEKQDYHLTT---FLHARQAEDENDREVEIDKRNHGRILKNYRQKKNNK 238

Query: 393 N----RLHDNEVDTFAADRRSSKYRDDSKGKKRFYE--ESVHNGDL 512
           N    R +  E+ TF  ++++SK ++     ++ ++  ES+ N D+
Sbjct: 239 NFHNGRYNKEEIRTFNRNKKNSKQKNKPILLQQVFQKPESIINRDV 284

---

>VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Contains: Vitellin|
           light chain (VL); Vitellin heavy chain (VH)]
          Length = 2148

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +3

Query: 213 RNERSDNSSREK-----HRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSE 377
           R  R  N+ +EK     ++ D YR HR  D  S    S   ++     ++H     +YS 
Sbjct: 465 RYRRDLNAIKEKKYYEAYKMDQYRLHRLNDTSSDSSSSDSSSSSSSESKEHRNGTSSYSS 524

Query: 378 SRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP 518
           S  + +    +E  ++++   SS        ++ +Y+ +  N    P
Sbjct: 525 SSSSSSSSSSSESSSYSSSSSSSSESYSISSEEYYYQPTPANFSYAP 571

---

>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
 Frame = +3

Query: 219  ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
            +R  +  RE+ R+      R ++    +    ++  R+R  E+  +      + R  +  
Sbjct: 730  DRDHDRERERERERDREKEREREREERERERERERERERERERERERARERDKERERQRD 789

Query: 399  LHDNEV---------DTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDS 548
              D +          +    DR      D+ K KKR+  E   +    P+  +E+  DS
Sbjct: 790  WEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDS 848



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 28/114 (24%), Positives = 47/114 (41%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRL 401
           R  +  REK R D  R  +S D    + R      RDR  EK  +EE  Y + + +    
Sbjct: 390 RHRSPMREKGRHDHERTSQSHDRRH-ERREDTRGKRDR--EKDSREEREYEQDQSSSRDH 446

Query: 402 HDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
            D+       DRR ++   D++ ++   +        + R  ++Y  D+K   D
Sbjct: 447 RDDREPRDGRDRRDAR---DTRDRRELRDS---RDMRDSREMRDYSRDTKESRD 494



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEK-------HCKEEHNY 371
           R+ER+    RE+ RD      R ++             RDR  EK         +E    
Sbjct: 672 RDERARERDRERERDRERERERERE-------------RDREREKERELERERARERERE 718

Query: 372 SESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSK 551
            E   ++ R  D + D    +R   + RD  K ++R  EE     + E    +E   + +
Sbjct: 719 REKERDRERDRDRDHD---RERERERERDREKEREREREERERERERERERERERERERE 775

Query: 552 R 554
           R
Sbjct: 776 R 776

---

>PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1173

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           P      +S R +  DD Y   R         RS +   R+R  ++      ++S  R +
Sbjct: 12  PVGSTYSSSRRSRRDDDRYERKRDDGRSYRRSRSPERRYRERDRDRDSYRRRDHSVDRRD 71

Query: 390 KNRLHDN-EVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
            +R  DN      + DRR S+ RD      R Y     + D + R+ ++   D  RR
Sbjct: 72  SHRDEDNYRRRDRSRDRRRSRDRDHD----RDYRRRSRSRDRDYRSRRDDSRDRVRR 124



 Score = 32.7 bits (73), Expect = 0.76
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR-------SLEKHCKEEHNY 371
           R +RS +  R + RD    Y R       D RS +D++RDR       S +   K   + 
Sbjct: 81  RRDRSRDRRRSRDRDHDRDYRRRSRSRDRDYRSRRDDSRDRVRRRTDDSADLKRKSRRDD 140

Query: 372 SESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           S  R         E  T A   R+    D+ + ++
Sbjct: 141 SRDRTRGAEPKSREASTPAIPTRTGPTDDEKRAER 175

---

>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-1 (EC 3.6.1.-) (Sex determination protein
           mog-1) (Masculinization of germ line protein 1)
          Length = 1131

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           +R +   R+K +D  +    S+ G  + V+  KD T D   +    +  NY ES    + 
Sbjct: 363 KRREVEDRKKAQDKHWELAGSKLGNLMGVKEKKDETADPEDD----DSGNYKESHQFASH 418

Query: 399 LHDNE-VDTFAADRRSSKYRD 458
           + DNE V  FA ++   + R+
Sbjct: 419 MKDNEAVSDFAMEKSIKQQRE 439

---

>NCAP_CVPRM (P24411) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD--TFAADRRSSKYRDDSKG 470
           L+V  S+DN+R RS  +      + S  R   N   D+ V+    AA ++   Y +  + 
Sbjct: 151 LEVNQSRDNSRSRSQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQ 210

Query: 471 KKRFYEESVHNG---DLEPRNAKEY 536
           + R   +   N    D  P+N  ++
Sbjct: 211 RSRSKSKERSNSKTRDTTPKNENKH 235



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           N+  DNS R + +  S   +RSQ  G     + KD++ ++++    K+   Y+E +  ++
Sbjct: 154 NQSRDNS-RSRSQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRS 212

Query: 396 RLHDNEVDTFAADRRSSKYRDDS--KGKKRFYEESVHNGDLE----PRNAKEYHGDS 548
           R    E       R +SK RD +     K  ++ +   GD+      R++    GDS
Sbjct: 213 RSKSKE-------RSNSKTRDTTPKNENKHTWKRTAGKGDVTRFYGARSSSANFGDS 262

---

>NCAP_CVPR8 (P33463) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD--TFAADRRSSKYRDDSKG 470
           L+V  S+DN+R RS  +      + S  R   N   D+ V+    AA ++   Y +  + 
Sbjct: 151 LEVNQSRDNSRSRSQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQ 210

Query: 471 KKRFYEESVHNG---DLEPRNAKEY 536
           + R   +   N    D  P+N  ++
Sbjct: 211 RSRSKSKERSNSKTRDTTPKNENKH 235



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           N+  DNS R + +  S   +RSQ  G     + KD++ ++++    K+   Y+E +  ++
Sbjct: 154 NQSRDNS-RSRSQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRS 212

Query: 396 RLHDNEVDTFAADRRSSKYRDDS--KGKKRFYEESVHNGDLE----PRNAKEYHGDS 548
           R    E       R +SK RD +     K  ++ +   GD+      R++    GDS
Sbjct: 213 RSKSKE-------RSNSKTRDTTPKNENKHTWKRTAGKGDVTRFYGARSSSANFGDS 262

---

>NCAP_CVPFS (P05991) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD--------TFAADRRSSKY 452
           L+V  S+DN+R RS  +      + S  R   N   D+ V+            D    + 
Sbjct: 151 LEVNQSRDNSRSRSQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQ 210

Query: 453 RDDSKGKKRFYEESVHNGDLEPRNAKEY 536
           R  SK K+R    +    D  P+N  ++
Sbjct: 211 RSCSKSKER---SNSKTRDTTPKNENKH 235

---

>LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2|
          Length = 392

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
 Frame = +3

Query: 213 RNERSDNSSREK-------------HRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEK-H 350
           R E  +   REK              R   +R HRS+       R  K  TR +S EK H
Sbjct: 246 RREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMS----RERKRRTRSKSREKRH 301

Query: 351 CKEEHNYSESR---HNKNRLHDNEVDTFAADRRSSK--YRD------------------- 458
                + S SR   H ++R    +     + RRSSK  +RD                   
Sbjct: 302 RHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRD 361

Query: 459 -DSKGKKRFYEESVHNGDLEPRNAKE 533
            D K KKR YE +  NG  E R + E
Sbjct: 362 RDRKDKKRSYESA--NGRSEDRRSSE 385

---

>ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12 (Ankyrin|
            repeat-containing cofactor 2) (GAC-1 protein)
          Length = 2062

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +3

Query: 219  ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHN-------YSE 377
            E+S N++  K  DD  +     D      +  K+     S EKH  E+ N       YS+
Sbjct: 886  EKSKNTAAIKKTDDREKSRERMDRKHDKEKPEKERHLAESKEKHLMEKKNKQSDNSEYSK 945

Query: 378  SRHNKNRLHDNEVD 419
            S   KN+  D E+D
Sbjct: 946  SEKGKNKEKDRELD 959

---

>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding|
            protein 3) (Formin-binding protein 11) (FBP 11)
          Length = 953

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
 Frame = +3

Query: 231  NSSREKHRDDSYRYH----RSQDGGSLDVRSSKDNTRDRSLEKH--------CKEEHNYS 374
            +S  +KH   S ++H    RS+ G   D   S    + +  E H         + E +Y 
Sbjct: 804  HSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESHSASERSSSAESERSYK 863

Query: 375  ES----RHNKNRLHDN---EVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
            +S    + +K R H +   E DT     +  K RD  K + R   ES H
Sbjct: 864  KSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRDSEKDRSRQRSESKH 912

---

>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5) (Cholinesterase-related
           cell division controller)
          Length = 1512

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEH-------- 365
           PR +R  +S R K R   +R HR +DG     R   + ++ RS   H  EE         
Sbjct: 198 PRRDRRSSSGRSKER---HREHRRRDG----QRGGSEASKSRSRHSHSGEERAEVAKSGS 250

Query: 366 NYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           + S     K+    +   +   DR S  +R  +K  K
Sbjct: 251 SSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSK 287

---

>TAF2_DROME (Q24325) Transcription initiation factor TFIID subunit 2|
            (Transcription initiation factor TFIID 150 kDa subunit)
            (TAFII-150) (TAFII150)
          Length = 1221

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
 Frame = +3

Query: 228  DNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHD 407
            DNSS      DS RY  S + G L    S D    +  +K  K+  +  + RH+K++  D
Sbjct: 1119 DNSSTMLDVGDSTRYESSHEEGKL---KSGDGGLKKKKKKEKKKHKHKHKHRHSKDKDKD 1175

Query: 408  NEVDTFAADRRSS-----KYRDDSKGKKRFYEESVHNGDLEPRN 524
             + +    D+R       + R+ +       E+S ++  L P N
Sbjct: 1176 KDKERKDKDKRDPHISRLQARETATPDTLSSEDSSNSNSLPPMN 1219

---

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           ++  D++  ++H+   +R HR ++          D+    S E    + H +   R  ++
Sbjct: 382 DDEGDSTESDRHQAHRHRGHREEE-------DEDDDDEGDSTESDHHQAHRHRGHREEED 434

Query: 396 RLHDNEVDTFAADR-RSSKYR---------DDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
              D+E D+  +DR ++ ++R         DD +G+        H G  E     +  GD
Sbjct: 435 EEDDDEGDSTESDRHQAHRHRGHGEEEDEDDDDEGEHHHVPHRGHRGHEEDDGGDDDDGD 494

---

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +3

Query: 234 SSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNE 413
           S ++K   D  ++        L ++ +KD  ++  LEK  + E        ++NR  D  
Sbjct: 83  SEKKKEEGDDQKFK------GLAIKDTKDKVKE--LEKEIEREAEERRREEDRNRDRDRR 134

Query: 414 VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKR 554
                 DR  ++ RDD + + R  E +  + + E R +   H +  R
Sbjct: 135 ESGRDRDRDRNRDRDDRRDRHRDRERNRGDEEGEDRRSDRRHRERGR 181



 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/114 (20%), Positives = 38/114 (33%)
 Frame = +3

Query: 228 DNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHD 407
           +  + E+ R++     R +     D    ++  RD   ++H   E N  +      R   
Sbjct: 115 EREAEERRREEDRNRDRDRRESGRDRDRDRNRDRDDRRDRHRDRERNRGDEEGEDRRSDR 174

Query: 408 NEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVG 569
              +    D    + R   +  K  Y E    G  EP   + Y G   R  D G
Sbjct: 175 RHRERGRGDGGEGEDRRRDRRAKDEYVEEDKGGANEPELYQVYKGRVTRVMDAG 228

---

>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Legumin B|
           acidic chain); Legumin B beta chain (Legumin B basic
           chain)] (Fragment)
          Length = 338

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCK-EEHNYSESRHN 389
           + +  ++   E+ R+  +R H  ++         +D    RS E   K ++H   + R +
Sbjct: 80  KEDEDEDEEEEEEREQRHRKHSEKE--------EEDEDEPRSYETRRKWKKHTAEKKRES 131

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
             +  + E      +      R  SKG+K   EE++ +  +    A+   GD
Sbjct: 132 HGQGEEEEELEKEEEEEEEIQRQHSKGRKNGLEETICSAKIRENIARPSRGD 183

---

>VITA2_XENLA (P18709) Vitellogenin A2 precursor (VTG A2) [Contains: Lipovitellin|
            I; Lipovitellin II; Phosvitin]
          Length = 1807

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
 Frame = +3

Query: 213  RNERSDNSSREKHRDDSYRYHRS--QDGGSLDVRSSKDNTRDRSLEKHCKEEHNYS--ES 380
            + E S +SS+E+++  + + +R   Q G S    SS  ++   S         + S  E+
Sbjct: 1176 QRESSSSSSQEQNKKRNLQENRKHGQKGMSSSSSSSSSSSSSSSSSSSSSSSSSSSSEEN 1235

Query: 381  RHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYH 539
            R +KNR HDN+     A  +S++++            S  +   E  N K++H
Sbjct: 1236 RPHKNRQHDNK----QAKMQSNQHQQKKNKFSESSSSSSSSSSSEMWNKKKHH 1284

---

>NCAP_CVPPU (P04134) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD--------TFAADRRSSKY 452
           L+V  S+DN+R RS  +      + S  R   N   D+ V+            D    + 
Sbjct: 151 LEVNQSRDNSRSRSQSRSRSRNRSQSRGRQQFNNKKDDSVEQAVLAALKKLGVDTEKQQQ 210

Query: 453 RDDSKGKKRFYEESVHNGDLEPRNAKEY 536
           R  SK K+R    +    D  P+N  ++
Sbjct: 211 RSRSKSKER---SNSKTRDTTPKNENKH 235

---

>RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-binding motif protein|
           25) (RNA-binding region-containing protein 7) (Protein
           S164)
          Length = 784

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
 Frame = +3

Query: 219 ERSDNSSREKHRD-DSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESR---- 383
           ER  +  RE+ RD D  R        S     S+D  R+R  E+  + E      R    
Sbjct: 297 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERER 356

Query: 384 ---------HNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDL-EPRNAKE 533
                      K++  D E D   A  R  K     + K+  Y+E + N ++ E +  +E
Sbjct: 357 EREREREREREKDKKRDREEDEEDAYER-RKLERKLREKEAAYQERLKNWEIRERKKTRE 415

Query: 534 YHGDSKRRSD 563
           Y  +++R  +
Sbjct: 416 YEKEAEREEE 425

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRY----------HRSQDGGSLDVRSSKDNTRDRSLEKHCKEE 362
           R   +D + R   RDD+ RY          HR +D      R  +   RD+  E+     
Sbjct: 200 RRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERER----R 255

Query: 363 HNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
            + S  R  ++R  D E    + +R   K RD  +   R  E +
Sbjct: 256 RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERA 299

---

>IF2_BUCAP (Q8K9H1) Translation initiation factor IF-2|
          Length = 867

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEH----NYSESRHN 389
           +++  +++ ++++   YH +     +  R+++DN RDR +EK+ +  H    NY + ++N
Sbjct: 186 KNNTENQKLYKEEKKDYHLTT---FIHNRNTEDN-RDREIEKNKRNFHRNIKNYRQKKNN 241

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKR 479
           K    +N++ +   + R SK R + K K +
Sbjct: 242 K---QNNQIKSKKDEVRISKNRKNVKQKNK 268

---

>YOD2_CAEEL (P34594) Hypothetical protein ZC262.2|
          Length = 233

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +3

Query: 306 RSSKDNTRDRSLEKHCKEEHNYSESRH---NKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           +  K   RDRS   H + E +    RH   N++R HD+       D   +  RDD +G  
Sbjct: 29  KEKKKEKRDRSRSPHKERERSPKRDRHPEKNESRRHDDRDQERRRDYGRNDRRDDRRGDG 88

Query: 477 RFYEESVHNGDLEPRNAKEYHGDSKRRS 560
            +  ++  N   + RN  +   D  R S
Sbjct: 89  SW--KTDRNDRNDRRNDFQRRDDKNRLS 114

---

>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +3

Query: 240 REKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRH-NKNRLHDNEV 416
           R   R D   YHR  DG     R  + N RD              + RH  K R H ++ 
Sbjct: 338 RSSSRSDDREYHRRSDG-----RYDRSNYRD--------------DYRHRRKERDHRDDQ 378

Query: 417 DTFAADRRSSKYRDDSKGKKR 479
            +F  +R S+ Y DD    KR
Sbjct: 379 SSFRNERFSNYYGDDRSYHKR 399

---

>Y170_BUCBP (Q89AS2) Hypothetical protein bbp_170 (yba2)|
          Length = 279

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 279 SQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRD 458
           S D   L   +  ++  D +   +  +EH Y E   N ++LHD+ + +  +D  S+   D
Sbjct: 197 SADSDDLVNNNMNNDKHDVASSDYINDEHEYGEHVKNDHQLHDSPLCSDVSDSTSNNNYD 256

Query: 459 DS 464
           +S
Sbjct: 257 ES 258

---

>PBPA_BACSU (P39793) Penicillin-binding protein 1A/1B (PBP1) [Includes:|
            Penicillin-insensitive transglycosylase (EC 2.4.2.-)
            (Peptidoglycan TGase); Penicillin-sensitive
            transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 914

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/116 (18%), Positives = 49/116 (42%)
 Frame = +3

Query: 216  NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
            +E+ D+   EK +DD+      +D G  D   + D+T D+      K+++  +    N N
Sbjct: 806  DEKQDD---EKTQDDTQTDDSQKDDGQTDQDQTDDSTNDQDK----KQDNTNTNPSDNNN 858

Query: 396  RLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSD 563
            +   N+ D   ++ + +   D + GK        +    +  N  + +  S  +++
Sbjct: 859  QDQSNDNDNDNSNNQDTSDGDSNSGKNDSTGSDTNKNKTDTSNKTQTNSSSIEKTN 914

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR-SLEKHCKEEHNYSESRHN 389
           R  R   S RE+ R+ S R  R Q     + R   +  R+R +  +H  E       R  
Sbjct: 634 RKSRDSESRRERERERSEREQRLQAQWEREERERLEIARERLAFHRHRLERERMERERLE 693

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKR 554
           + R+H  +       RR  +     + + R  +E  +  +  P   + Y  D +R
Sbjct: 694 RERMHVEQ-----ERRREQERIHREREELRRQQELRYEQERRPAVRRPYEVDGRR 743

---

>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma|
           coactivator 1-alpha (PPAR gamma coactivator 1-alpha)
           (PPARGC-1-alpha) (PGC-1-alpha)
          Length = 796

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 33/116 (28%), Positives = 47/116 (40%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           P++  S    R + R  S+  HRS        RS   +   RS  + C     YSES H 
Sbjct: 552 PKSLFSQRPQRMRSRSRSFSQHRSCSRSPYS-RSRSRSPGSRSSSRSCY----YSESGHC 606

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
           ++R H N     A  R  S Y    + +   YEE  H    E    +EY  + ++R
Sbjct: 607 RHRTHRNS-PLCARSRSRSPY--SRRPRYDSYEEYQH----ERLKREEYRREYEKR 655

---

>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           PR +R  +S R K R   +R HR +DG     RS  + ++ RS   H  EE   +    +
Sbjct: 198 PRRDRRSSSGRSKER---HREHRRRDG----TRSGSEASKARSRHGHSGEERAEAAKSGS 250

Query: 390 KNRLHDNEVDTFAADRRSSKYRD 458
            +          A    SS  +D
Sbjct: 251 SSSSGGRRKSASATSSSSSSRKD 273

---

>YR871_MIMIV (Q5UP41) Hypothetical protein R871|
          Length = 561

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 231 NSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDN 410
           + S +KH+  S + H+S        +  K + RD+S ++H  + H   +  H K     +
Sbjct: 140 HKSSKKHK--SSKKHKSS-------KHDKSSKRDKSSKRH--KSHKKKDKSHKKRYRSPS 188

Query: 411 EVDTFAADRRSSKYRDDSKGKKRFY 485
              + + DR SS  RD S  K+R Y
Sbjct: 189 SDRSLSRDRSSS--RDRSYKKRRLY 211



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 309 SSKDNT--RDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRF 482
           SSKD +  R RS ++H   + + S  +H  ++   +     ++ R  S  + D   KKR+
Sbjct: 125 SSKDKSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRDKSSKRHKSHKKKDKSHKKRY 184

Query: 483 YEESVHNGDLEPRNAKEYHGDSKRR 557
              S        R++       KRR
Sbjct: 185 RSPSSDRSLSRDRSSSRDRSYKKRR 209

---

>CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L)|
          Length = 526

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEK-HCKEEHNYSESRHN 389
           +  RS + S+ +   D+ + HR + G   D R      R RS E+ H  + H  S S H 
Sbjct: 468 KKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRE-----RSRSFERSHKSKHHGGSRSGHG 522

Query: 390 KNR 398
           ++R
Sbjct: 523 RHR 525

---

>IWS1A_XENLA (Q6DE96) IWS1-like protein A|
          Length = 836

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
 Frame = +3

Query: 258 DSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKE----EHNYSESRHNKNRLHDNEVDTF 425
           D+Y    S DGG+  V+  +D+  D    +   E    EH  SE  H+    H +  D+ 
Sbjct: 4   DNYSPEHSDDGGATPVQDERDSASDDEGNEQRSEPGSPEHQ-SEDEHSDVEDHKHSSDSG 62

Query: 426 AADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
           + + + +++  + + + R      ++ DLE  +A +
Sbjct: 63  SDNEKGTEHDSEDEHRPR------NSSDLENHDASD 92

---

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE-KHCKEEHNYSESRHNK 392
           + +S +  R + RD S R  RS+   S       D +R      +H +    Y E     
Sbjct: 139 SHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRS 198

Query: 393 NRLHDNEVDTFAADRRS-SKYRDDSKGKKR 479
           +R HD + +    D RS  + R  S+ ++R
Sbjct: 199 SRAHDYDYEDLRDDDRSHERKRSRSRPRER 228

---

>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/105 (21%), Positives = 46/105 (43%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E+S +SS+E    +       +D    +V + K+  ++   +K  KE+ +  E +  K  
Sbjct: 393 EQSTSSSQETKETEEEPKKAKEDSLIKEVETEKEEVKEDDSKKEKKEKKDKKEKKEKK-- 450

Query: 399 LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
                      +++  K + + K KKR  E+    GD E + +K+
Sbjct: 451 -----------EKKDKKEKKEKKEKKRKSED----GDSEEKKSKK 480

---

>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)|
           (Zona occludens 2 protein) (Tight junction protein 2)
          Length = 1190

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRS-SKDNTRDRSLEKHCKEEHNYSESRHN 389
           R+  + +  R +  +DS    R  +      R  S+D +R RSLE+   ++H  +  R  
Sbjct: 158 RSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRSRGRSLERGLDQDHARTRDRSR 217

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNG---DLEPRNAKEY 536
              L       F   R   + R   +   + YE + H     D E   + EY
Sbjct: 218 GRSLERGLDHDFGPSRDRDRDRSRGRSIDQDYERAYHRAYDPDYERAYSPEY 269

---

>UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB fusion protein|
           4)
          Length = 1483

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDS---YRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRH 386
           ++  D+ +   H DDS   Y YHR+Q+G   D    +D             E ++  +  
Sbjct: 63  DDGEDDDNDYHHEDDSGLLYGYHRTQNGSDEDRNEEEDGL-----------ERSHDNNEF 111

Query: 387 NKNRLHDNEV-DTFAADRRSSKYRDDSKG 470
             N LH  ++ +TFA  +R  + R  S+G
Sbjct: 112 GSNPLHLPDILETFA--QRLEQRRQTSEG 138

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRY----------HRSQDGGSLDVRSSKDNTRDRSLEKHCKEE 362
           R   +D + R   RDD+ RY          HR +D      R  +   RD+  E+     
Sbjct: 200 RRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERER----R 255

Query: 363 HNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
            + S  R  ++R  D +    + +R   K RD  +   R  E +
Sbjct: 256 RSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSRERA 299

---

>PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1227

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
 Frame = +3

Query: 213 RNERSDNSSREKHRD-DSYRYHRSQDG---------GSLDVRSSKDNTRDRSLEKHCKEE 362
           RN+  D+  R + R  D  R HR+ D             +    +D  RDR+     ++ 
Sbjct: 33  RNDGRDHRRRTRSRSPDVRRQHRNSDRLYSNELLHQQPRNRDRDRDRDRDRA-----RDR 87

Query: 363 HNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHN--GDLEPRNAKEY 536
            NY     + +R  DN    +   RR ++ RD  + + RF ++ + +   D     ++E 
Sbjct: 88  DNYRRRDRSLDRRDDNH---YRGGRRDNRERDRRRSRDRF-DDRIRSPMTDRRRNRSREN 143

Query: 537 HGDSKRRSD 563
             D +RR D
Sbjct: 144 DRDVRRRDD 152



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           N R  + S ++  D+ YR  R +D    D R S+D   DR          N S       
Sbjct: 89  NYRRRDRSLDRRDDNHYRGGR-RDNRERDRRRSRDRFDDRIRSPMTDRRRNRSRENDRDV 147

Query: 396 RLHDNEVDTFAADRRSS------KYRDDSKGKKRFYEESVHNGDLEPRN 524
           R  D+     +  R  +        RDD + +K   ++S + G  + R+
Sbjct: 148 RRRDDSRSRISGRREGTTDSPARSNRDDGRNQKTPLDDSGNGGASQVRH 196

---

>HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)|
          Length = 732

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE--KHCKEEH-NYSESRHNKNRLHDNE- 413
           KH DD      S  GGS  VR+       R  +   H KE+   Y E R  K  +  +  
Sbjct: 152 KHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQ 211

Query: 414 -----VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
                +  F    R  +  DD   +K   EE     + E  +  E         DVGS
Sbjct: 212 FIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEI-------EDVGS 262

---

>HS90A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (Tumor-specific|
           transplantation 86 kDa antigen) (TSTA)
          Length = 732

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE--KHCKEEH-NYSESRHNKNRLHDNE- 413
           KH DD      S  GGS  VR+       R  +   H KE+   Y E R  K  +  +  
Sbjct: 152 KHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQ 211

Query: 414 -----VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
                +  F    R  +  DD   +K   EE       E    ++   D     DVGS
Sbjct: 212 FIGYPITLFVEKERDKEVSDDEAEEKEEKEE-------EKEKEEKESDDKPEIEDVGS 262

---

>HS90A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86)|
          Length = 732

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 33/120 (27%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE--KHCKEEH-NYSESRHNKNRLHDNE- 413
           KH DD      S  GGS  VR+       R  +   H KE+   Y E R  K  +  +  
Sbjct: 152 KHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYMEERRIKEIVKKHSQ 211

Query: 414 -----VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHG--DSKRRSDVGS 572
                +  F    R  +  DD   +K          D E    KE  G  D     DVGS
Sbjct: 212 FIGYPITLFVEKERDKEVSDDEAEEKE---------DKEEEKEKEEKGIDDKPEIEDVGS 262

---

>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD2) (CHD-2)
          Length = 1739

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 327  RDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNG 506
            R    E+H  ++H+Y + RH         +D      RS  YR ++  +KR Y++  ++ 
Sbjct: 1661 RHHQYEQHWYKDHHYGDRRH---------MDA----HRSGSYRPNNMSRKRPYDQ--YSS 1705

Query: 507  DLEPRNAKEYH 539
            D + R  ++Y+
Sbjct: 1706 DRDHRGHRDYY 1716

---

>CWC25_SCHPO (Q9Y805) Pre-mRNA-splicing factor cwc25 (Complexed with cdc5|
           protein 25) (Cell cycle control protein cwf25)
          Length = 376

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
 Frame = +3

Query: 45  DRHKDEESHRDERYKXXXXXXXXXXXXVKYKGERSXXXXXXXXXXXXXXXXXXXXPRNER 224
           DR   E  HRD  ++                 +RS                     RN+R
Sbjct: 164 DRKSKERRHRDRHHRSNQ--------------DRSRERSDNEQHSSDKREHSRRSYRNDR 209

Query: 225 SDNSSREKHRDDSYRYHRSQDGGSL------DVRSSKDNTRD-RSLEKHCKEEHNYSES- 380
             N+ RE+  +D YR+    D G        D+R  + + +D R L+K+ +    YS S 
Sbjct: 210 --NNWRERTHNDRYRHRDKYDSGYFKKHYDDDMRFDQGHFQDERDLKKYVRTSRQYSRSP 267

Query: 381 ----RHNKNRLHDNEVDTFA-----ADRRSSKYRDDSK 467
               R   ++ H  +           + R  K +D++K
Sbjct: 268 SPDFRTRNHQFHSRDSQPITQRHTDIESRLQKMQDNAK 305

---

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR---SLEKHCKEEHNYSESRHN 389
           ++  +  +EK RD      R ++    D     +N+R R   +LE   K   NY+ES H+
Sbjct: 4   DKDKDKDKEKDRDRD----RDREREKRDKARESENSRPRRSCTLEGGAK---NYAESDHS 56

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
           ++   DN+ ++  A+  + K +     KK  YE +
Sbjct: 57  ED--EDNDNNSATAEESTKKNKKKPPKKKSRYERT 89

---

>HS90A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86) (Fragment)|
          Length = 719

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE--KHCKEEH-NYSESRHNKNRLHDNE- 413
           KH DD      S  GGS  VR+       R  +   H KE+   Y E R  K  +  +  
Sbjct: 142 KHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQ 201

Query: 414 -----VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
                +  F    R  +  DD   +K   EE       E    ++   D     DVGS
Sbjct: 202 FIGYPITLFVEKERDKEVSDDEAEEKEDKEE-------EKEKEEKESDDKPEIEDVGS 252

---

>DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-) (CARPEL|
           FACTORY protein) (SHORT INTEGUMENTS 1 protein)
           (SUSPENSOR1 protein)
          Length = 1909

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           ++   +  R++ R  SY+  RS   G   V +S++   DR + +  K   N+ E+ +NK 
Sbjct: 116 SKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREG--DRFMNR--KRTRNWDEAGNNKK 171

Query: 396 RLHDNEVDTFAADRRSSKY--RDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSK 551
           +   N       DR    Y  RD     +  Y       D E R+ K+  G ++
Sbjct: 172 KRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHE-RDVKKVSGGNR 224

---

>NCAP_CVCAE (Q04700) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
 Frame = +3

Query: 297 LDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVD--------TFAADRRSSKY 452
           L+V  S+DN+R  S  +      + S  R   N   D+ V+            D    + 
Sbjct: 151 LEVNQSRDNSRSPSQSRSQSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQ 210

Query: 453 RDDSKGKKRFYEESVHNGDLEPRNAKEY 536
           R  SK K+R    +    D  P+N  ++
Sbjct: 211 RSRSKSKER---SNSKTRDTTPKNENKH 235

---

>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 2) (CDK11)
          Length = 780

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 20/100 (20%), Positives = 39/100 (39%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E  +    E+    S      ++    +  S+ +   ++S E+  +EE +  E R N+N 
Sbjct: 294 EEEEEEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENH 353

Query: 399 LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP 518
           L       F  D   S+  ++  G+      ++  GD  P
Sbjct: 354 LLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVP 393

---

>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1) (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/100 (21%), Positives = 41/100 (41%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E   ++S E   ++       ++ GS     + +   ++S E+  +EE +  E R N+N 
Sbjct: 314 EEEGSTSEESEEEEEEEEEEEEETGS-----NSEEASEQSAEEVSEEEMSEDEERENENH 368

Query: 399 LHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP 518
           L       F  D   S+  ++  G+      ++  GD  P
Sbjct: 369 LLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVP 408

---

>HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (NY-REN-38|
           antigen)
          Length = 731

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
 Frame = +3

Query: 246 KHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLE--KHCKEEH-NYSESRHNKNRLHDNE- 413
           KH DD      S  GGS  VR+       R  +   H KE+   Y E R  K  +  +  
Sbjct: 152 KHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQ 211

Query: 414 -----VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRSDVGS 572
                +  F    R  +  DD   +K   EE     + E  +  E         DVGS
Sbjct: 212 FIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEI-------EDVGS 262



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 315 KDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
           K+ + D + EK  KEE    E + ++++    E++   +D    K   D K KK+  E+ 
Sbjct: 227 KEVSDDEAEEKEDKEEEKEKEEKESEDK---PEIEDVGSDEEEEKKDGDKKKKKKIKEKY 283

Query: 495 VHNGDL 512
           +   +L
Sbjct: 284 IDQEEL 289

---

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR---SLEKHCKEEHNYSESRHN 389
           ++  +  +EK RD      R ++    D     +N R R   +LE   K   NY+ES H+
Sbjct: 4   DKDKDKDKEKDRDRD----RDRERDKRDKARESENARPRRSCTLEGGAK---NYAESDHS 56

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGK 473
           ++  +DN   T  + R+S K     K +
Sbjct: 57  EDEDNDNGATTEESARKSRKKPPKKKSR 84

---

>MRP4_HUMAN (O15439) Multidrug resistance-associated protein 4|
           (MRP/cMOAT-related ABC transporter) (Multi-specific
           organic anion transporter-B) (MOAT-B)
          Length = 1325

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 120 YVYLRVSTFPLCTFHLYVIPHLYAYHTLCLSL 25
           Y Y  V TF  CT  L ++ HLY YH  C  +
Sbjct: 135 YAYATVLTF--CTLILAILHHLYFYHVQCAGM 164

---

>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD1) (CHD-1)
          Length = 1711

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +3

Query: 219  ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
            ++SD+  R      + + HR  D    D R   D  + R L+ H   EH  S     K+R
Sbjct: 1568 KKSDSRKRPYSSFSNGKDHREWDHYRQDSRYYSDREKHRKLDDHRSREHRPSLEGGLKDR 1627

Query: 399  LHDNEVDTFAADRRSSKYRDDSK 467
             H +   + +  R  S +R  S+
Sbjct: 1628 CHSDH-RSHSDHRMHSDHRSSSE 1649

---

>CWC25_DEBHA (Q6BNE1) Pre-mRNA-splicing factor CWC25|
          Length = 244

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGG---SLDVRSSKDNTRDRSLEKHCKEEHNYSESR 383
           +N ++D   R K+ +   +Y   +D G   S D   S+D + +R   +H  +    S+ R
Sbjct: 135 KNIQNDPLIRIKN-EQLKKYQSVKDSGRHSSKDRHRSRDRSPNRHTFRHKSDNDKVSKHR 193

Query: 384 HNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP 518
           H+ +R   +      +  R S+ +D   G K +   S  +    P
Sbjct: 194 HSSHRESRSGRSKLKSSHRHSRDKDSIDGSKDYSHLSQRDNTKTP 238

---

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR---SLEKHCKEEHNYSESRHN 389
           ++  +  +EK RD      R ++    D     +N R R   +LE   K   NY+ES H+
Sbjct: 4   DKDKDKDKEKDRDRD----RDRERDKRDKARESENARPRRSCTLEGGAK---NYAESDHS 56

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEES 494
           ++   DN+ ++   +  + K R     KK  YE +
Sbjct: 57  ED--EDNDNNSATTEESNKKSRKKPPKKKSRYERT 89

---

>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1045

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 24/113 (21%), Positives = 44/113 (38%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRL 401
           R+ NSS    R  S   HR +  G      S+  +R    +K+ ++ H     +  ++R 
Sbjct: 572 RNLNSSVRGDRVYSPYNHRHRKRGRSRSSDSRSQSRSGHDQKNHRKHHGKKRMKSKRSRS 631

Query: 402 HDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRRS 560
            ++       D++ S+ RD S  ++              R+    HG  + RS
Sbjct: 632 RESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSESTSRSRSRSSDHGKRRSRS 684

---

>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           +RS    R++ RDD  R  R ++G   +    ++  R+RS E   +E   Y E R +++R
Sbjct: 447 DRSPRRDRDRERDDHDRRDRDRNGRDRERNGDRERYRERSRE---RENERYRE-RDDRDR 502

---

>PHF3_HUMAN (Q92576) PHD finger protein 3|
          Length = 2039

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = +3

Query: 228  DNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHD 407
            D  SRE+   D  R   S      D ++S+D+   R+++K           + +K +  D
Sbjct: 1958 DRKSREEGHKDKERARLSHGDRGTDGKASRDS---RNVDK-----------KPDKPKSED 2003

Query: 408  NEVDTFAADRRSSKYRDDSKGKKRFYEESVH 500
             E D    +R  SK+R+  K + R++++  H
Sbjct: 2004 YEKD---KEREKSKHREGEKDRDRYHKDRDH 2031

---

>SNW1_MOUSE (Q9CSN1) SNW domain-containing protein 1 (Nuclear protein SkiP)|
           (Ski-interacting protein)
          Length = 536

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 339 LEKHCKEEHNYSESRHN--KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDL 512
           +EK   E     E RH+  K R HD  +   A D+RS   R+++    R   E +  G  
Sbjct: 342 VEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNEN----RDISEVIALGVP 397

Query: 513 EPRNAKEYHGDSK 551
            PR + E   D +
Sbjct: 398 NPRTSNEVQYDQR 410

---

>SNW1_HUMAN (Q13573) SNW domain-containing protein 1 (Nuclear protein SkiP)|
           (Ski-interacting protein) (Nuclear receptor coactivator
           NCoA-62)
          Length = 536

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 339 LEKHCKEEHNYSESRHN--KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDL 512
           +EK   E     E RH+  K R HD  +   A D+RS   R+++    R   E +  G  
Sbjct: 342 VEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNEN----RDISEVIALGVP 397

Query: 513 EPRNAKEYHGDSK 551
            PR + E   D +
Sbjct: 398 NPRTSNEVQYDQR 410

---

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 309  SSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
            S+KD +R  S+ +  K+EH+ +ESR       ++ +D        S  +D  K +K
Sbjct: 2884 STKDVSRPASVVESVKDEHDKAESRRESIAKVESVIDEAGKSDSKSSSQDSQKDEK 2939

---

>CACB2_RABIT (P54288) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 632

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDR-------SLEKHCKEEHN 368
           P +     +SR   R +++     +   S  V   +D + +            H  E H 
Sbjct: 509 PHHNHRSGTSRGLSRQETFDSETQESRDSAYVEPKEDYSHEHVDHYAPHRDHNHRDETHR 568

Query: 369 YSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
            S+ RH + R    ++D        +K R   K K R+ ++       +   A E++ D
Sbjct: 569 SSDHRHRETRHRSRDMDREQDHNECNKQRSRHKSKDRYCDKDGEVISKKRNEAGEWNRD 627

---

>MOVP_TMV (P03583) Movement protein (Cell-to-cell transport protein) (30 kDa|
           protein) [Contains: 27.9 kDa protein; 25.3 kDa protein;
           19.5 kDa protein]
          Length = 268

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 276 RSQDGGSLDVRSSKDNTRDRSL-EKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRS 443
           RS+ G   DVR  K+++ DRS+  K+ +   ++      KN L D++ +   A+  S
Sbjct: 211 RSRTGKKSDVRKGKNSSNDRSVPNKNYRNVKDFGGMSFKKNNLIDDDSEATVAESDS 267

---

>IWS1_XENTR (Q505H7) IWS1-like protein|
          Length = 909

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSY-----RYHRSQDGGSLDVRSSKDNTRD--RSLEKHCKEEHNY 371
           R +RS+  S E+  +D +       HRS  G   +  +  +++ D  R       E H+ 
Sbjct: 36  REQRSEPGSPERQSEDEHSDIEDNKHRSDSGSDNEEGAEHNDSEDEHRPHNSSDLENHDA 95

Query: 372 SESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEP--RNAKEYHGD 545
           S+S + ++R   N + + + D    +   DS+G     +++  + D EP   +A +   D
Sbjct: 96  SDSENEESR---NHIASDSEDDVRRQKGSDSEGSP--VKDAASDSDEEPIRHSASDSEDD 150

Query: 546 SKRR 557
             R+
Sbjct: 151 GPRK 154



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
 Frame = +3

Query: 210 PRNERSDNSSREKHR--------DDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEH 365
           PR E++++S  E+H+        D++   H+  D  S D   +K    D   E   K   
Sbjct: 152 PRKEQANDSEDERHKKNTASDSEDEAPAKHQGSD--SEDEAPAKHVASDSEDEAPAKRAA 209

Query: 366 NYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKK 476
           + SE      R   +  D   A R +S   D++  K+
Sbjct: 210 SDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKR 246

---

>CACB2_RAT (Q8VGC3) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 655

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNT-----RDRSLE-----------KHC 353
           RS +++ + HR  + R    Q+    + + S+D+       D S E            H 
Sbjct: 527 RSSSATHQNHRSGTGRGLSRQETFDSETQESRDSAYVEPKEDYSHEHVDRYVPHREHNHR 586

Query: 354 KEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
           +E H+ +  RH + R    ++         SK R   K K R+ +             KE
Sbjct: 587 EESHSSNGHRHREPRHRTRDMGRDQDHNECSKQRSRHKSKDRYCD-------------KE 633

Query: 534 YHGDSKRRSDVG 569
               SKRRS+ G
Sbjct: 634 GEVISKRRSEAG 645

---

>CYP8_CAEEL (P52016) Peptidyl-prolyl cis-trans isomerase 8 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-8)
          Length = 466

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/83 (21%), Positives = 36/83 (43%)
 Frame = +3

Query: 312 SKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEE 491
           S ++  ++  +KH +EE      R N     D    + +  R  ++ RDD  G+    + 
Sbjct: 216 SPESREEKKKDKHGREEKRDRRRRSNDRHGRDRRSRSRSQSRDRNRRRDDRSGR----DG 271

Query: 492 SVHNGDLEPRNAKEYHGDSKRRS 560
            V   + + R+ ++   D +R S
Sbjct: 272 RVGRNERDDRSGRDERRDDRRSS 294

---

>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDV-RSSKDNTRDRSLEK-------HCKEE----- 362
           RS + SR K R  S    RS+   S    + +K  +R RS +K       H +++     
Sbjct: 223 RSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNND 282

Query: 363 -----HNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNA 527
                 ++S SRH+      ++      +RR S  R  S+ K R  E+S+       R+ 
Sbjct: 283 SAGKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSR 342

Query: 528 KEYHGDSKRR 557
                  KR+
Sbjct: 343 SRSRSKDKRK 352

---

>SWC5_CANAL (Q5A8H7) SWR1-complex protein 5|
          Length = 338

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 14/130 (10%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQD-----GGSLDVRSSKDNTRDRSLEK---HCKEEHNY 371
           N+ + +S  +   D+ Y   +  +     G S D     D  +D    K   +   E + 
Sbjct: 29  NKNNIDSEEDDEEDEDYDPEKKNEAENEGGVSSDEEEDNDQYKDGKTSKIPDYSTIESST 88

Query: 372 SESRHNKNRLHDNE------VDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
           S+ +    RLH+        +  F  D ++   +D S        E++ NG     N++E
Sbjct: 89  SQVKTRSQRLHEKLSNQSRFIGNFEVDSKTGLVKDQSNIDVNSIFENLKNGSPSIDNSEE 148

Query: 534 YHGDSKRRSD 563
            + DS++ ++
Sbjct: 149 LNIDSEKTAN 158

---

>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 764

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = +3

Query: 216 NERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKN 395
           +E  D+   E+  +D      S+DGG     SS+D + D    +   ++ +  E   + +
Sbjct: 682 DEEDDDDDDEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEDDDDDEDDDE---DDD 738

Query: 396 RLHDNEVDTFAADRRSSKYRDDS 464
              DNE +  ++   SS    DS
Sbjct: 739 EDEDNESEGSSSSSSSSGDSSDS 761

---

>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E  D+   ++  +D      S+DGG     SS+D + D    +   E+ +  E   + + 
Sbjct: 683 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE---DDDE 739

Query: 399 LHDNEVDTFAADRRSSKYRDDS 464
             DNE +  ++   SS    DS
Sbjct: 740 DEDNESEGSSSSSSSSGDSSDS 761

---

>SSRP_DROME (Q05344) Single-strand recognition protein (SSRP) (Chorion-factor|
           5)
          Length = 723

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
 Frame = +3

Query: 213 RNERSDNSSREKHR-DDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           +++  D ++++K R  D  R ++ + GG  D      +++ R  E    ++ N S S   
Sbjct: 599 KSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFK 658

Query: 390 KNRL--------HDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKE 533
                        D+E D   A ++S    D    KK+   ES      E  NA +
Sbjct: 659 SKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEEDSNASD 714

---

>CACB2_BOVIN (Q9MZL5) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 603

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 24/111 (21%), Positives = 41/111 (36%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           R E  D+ ++E  RD +Y   + +           D+        H +E H   E RH +
Sbjct: 494 RQETLDSETQES-RDSAYAEPKEEYS-----HEHADHYAPHRDHNHREEPHGGGEHRHRE 547

Query: 393 NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
            R    + D       S+K R   K K R+ ++           A +++ D
Sbjct: 548 PRHRSRDPDREQDHNESNKQRSRHKSKDRYCDKDGEGLSRRRNEAADWNRD 598

---

>IF2_STRA5 (Q8E1H3) Translation initiation factor IF-2|
          Length = 927

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +3

Query: 300 DVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRSSKYRDDSKGKKR 479
           D R  K    D+S +   + E    ++R+ KN  + N+V     ++R+S +  + K KK 
Sbjct: 269 DSRRKKQTRSDKSRQFSNENEDGQKQTRNKKNWNNQNQV----RNQRNSNWNHNKKNKK- 323

Query: 480 FYEESVHNGDLEPRNAKEYH 539
                  NG  +P   +++H
Sbjct: 324 ----GKTNGAPKPVTERKFH 339

---

>CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 488

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/114 (22%), Positives = 41/114 (35%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHN 389
           PR        +   + D  +  +    G      S+D       EK  K++     S+  
Sbjct: 144 PRKLSKAKEEKPDEKKDLKKERKDSKKGKESATESEDEKA--GAEKGAKKDRK--GSKKG 199

Query: 390 KNRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSK 551
           K    D+  +   A + S K + DSKGK+   E     GD +  + K   G  K
Sbjct: 200 KETPSDSGSEKGDAKKDSKKSKKDSKGKESATESEGEKGDAKKDDKKGKKGSKK 253

---

>CCD45_MOUSE (Q8BVV7) Coiled-coil domain-containing protein 45|
          Length = 827

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
 Frame = +3

Query: 213  RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSS--KDNTRDRSLEKHCKEE-------- 362
            + +R   S  +++R  S R  +  D   + +R+   K  TR+  + K   EE        
Sbjct: 648  QRQRLTQSKIKENRHPSVRARKYYDDYRVQLRAKMMKMRTREEMIFKKLFEEGLQIQKQR 707

Query: 363  ----HNYS-ESRHNKNRLHDNEVDTFAADRRS---------SKYRDDSKGKKRFYEESVH 500
                 NY+ E R+ + R H NE+D+     +          S+ R + K +++F  +++H
Sbjct: 708  LRDLRNYAKEKRNEEKRQHQNELDSMENHYKDQFSLLAEAISQERQELKVRQKFQAQTLH 767

Query: 501  NGDLEPRNAKE 533
                E R   E
Sbjct: 768  KVKRELRAKME 778

---

>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 953

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRD-----------RSLEKHCK 356
           PR + + NSS+ K         +S  GGS + +S +    D           R+  KHC+
Sbjct: 212 PREKATGNSSQGKDLSRHSHARKSGGGGSPETKSDQAPKCDISGKEAISALTRAKSKHCR 271

Query: 357 EEHNYSESRHNKNRLHDNEVDTF 425
           +E   +  RH    L   +V  F
Sbjct: 272 QEIAETYCRHKLGLLMPEKVARF 294

---

>KNOB_PLAFD (P05229) Knob-associated histidine-rich protein (KAHRP) (Fragment)|
          Length = 277

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
 Frame = +3

Query: 246 KHRDDSY---RYHRSQDGGSLDVRSSK---DNTRDRSLEKHCKEEHNYSESRHNKNRLHD 407
           KH D+ +   + H   DG     + SK   D+  ++   K  K+  +    +  K++ HD
Sbjct: 169 KHGDEKHHSSKKHEGNDGEGEKKKKSKKHKDHDGEKKKSKKHKDNEDAESVKSKKHKSHD 228

Query: 408 NEVDTFAADRRSSKYRDDS-----KGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
            E       ++S K++D+      K KK   E+   +   +P + K      K++
Sbjct: 229 CE------KKKSKKHKDNEDAESVKSKKSVKEKGEKHNGKKPCSKKTNEEKKKKK 277



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           ++E +D    +K +    + H+  DG     +  KDN    S++    + H+  + +  K
Sbjct: 180 KHEGNDGEGEKKKKS---KKHKDHDGEKKKSKKHKDNEDAESVKSKKHKSHDCEKKKSKK 236

Query: 393 NRLHDNEVDTFAADRRSSKYRDDS-KGKK 476
           ++  DNE       ++S K + +   GKK
Sbjct: 237 HK--DNEDAESVKSKKSVKEKGEKHNGKK 263

---

>CCNL1_CHICK (Q5ZJP9) Cyclin-L1|
          Length = 534

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/112 (20%), Positives = 47/112 (41%)
 Frame = +3

Query: 222 RSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRL 401
           +S + SR +      +++ S    S  +RS K  ++D     H   +     S  +++R 
Sbjct: 429 KSHSRSRSRSGSPPRQFNHSSTYKSSKMRSYK-KSKDYKYSAHKARKSRSRSSSRSRSRS 487

Query: 402 HDNEVDTFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGDSKRR 557
            +    +    ++S  YR+    + R YE + H  D      +++ G S+ R
Sbjct: 488 RERSDHSGKYKKKSHYYRNHRHERSRSYERASHRYD------RDHPGHSRHR 533

---

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
 Frame = +3

Query: 210 PRNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKH---CKEEHNYSES 380
           P     D   R+  R++  R    ++GG      S+D  R+RS E++    +EE +   S
Sbjct: 226 PSVSDDDRGYRQSSREERDRKSSREEGGR---SRSRDRYRNRSRERYRDRSREERSRDRS 282

Query: 381 R------------HNKNRLHDNEVDTFAADRRS---SKYRDDSKGKKRFYEESVHNGDLE 515
           R             +++R  D + D   +  RS   S  R  ++ ++   + S      +
Sbjct: 283 RERLRSRRDRDRDRDRDRDRDRDRDNVQSSGRSSGRSSVRSSARSERSLRDRS---RSRD 339

Query: 516 PRNAKEYHGDSKRRSDVG 569
           P   ++Y   S+ R   G
Sbjct: 340 PDRDRDYRSRSRERDSGG 357

---

>MOVP_TMVOM (P03582) Movement protein (Cell-to-cell transport protein) (30 kDa|
           protein) [Contains: 27.9 kDa protein; 25.3 kDa protein;
           19.5 kDa protein]
          Length = 268

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 276 RSQDGGSLDVRSSKDNTRDRSL-EKHCKEEHNYSESRHNKNRLHDNEVDTFAADRRS 443
           RS+ G   DVR  K ++ DRS   K+ +   ++      KN L D++ +T  A+  S
Sbjct: 211 RSRTGKKSDVRKGKISSSDRSAPNKNYRNVKDFGGMSFKKNNLIDDDSETTVAESDS 267

---

>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)|
           (HRPI) (Fragment)
          Length = 473

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           ++E +D    +K +    + H+  DG     +  KDN    S++    + H+  + +  K
Sbjct: 365 KHEGNDGEGEKKKKS---KKHKDHDGEKKKSKKHKDNEDAESVKSKKHKSHDCEKKKSKK 421

Query: 393 NRLHDNEVDTFAADRRSSKYRDDS-KGKK 476
           ++  DNE       ++S K + +   GKK
Sbjct: 422 HK--DNEDAESVKSKKSVKEKGEKHNGKK 448

---

>CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator protein 1 (Cell|
            cycle and apoptosis regulatory protein 1) (CARP-1)
          Length = 1146

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/93 (19%), Positives = 39/93 (41%)
 Frame = +3

Query: 213  RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
            R +  D+  +++ RD+  +  + +D    D  + +DN +D       +E  +  + R  +
Sbjct: 826  RRKSGDDKDKKEDRDERKKEEKRKDDSKDDDETEEDNNQDEYDPMEAEEAEDEDDDREEE 885

Query: 393  NRLHDNEVDTFAADRRSSKYRDDSKGKKRFYEE 491
                D++ D        S+Y  D   K +  E+
Sbjct: 886  EVKRDDKRDV-------SRYCKDRPAKDKEKEK 911

---

>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = +3

Query: 219 ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNR 398
           E  D+   E+  +D      S+DGG     SS+D + D        ++ +  +   + + 
Sbjct: 684 EEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDESEDGD---ENDDDDDDEDDEDDDDE 740

Query: 399 LHDNEVDTFAADRRSSKYRDDS 464
             DNE +  ++   SS    DS
Sbjct: 741 DEDNESEGSSSSSSSSGDSSDS 762

---

>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 213 RNERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNK 392
           ++E +D    +K +    + H+  DG     +  KDN    S++    + H+  + +  K
Sbjct: 365 KHEGNDGEGEKKKKS---KKHKDHDGEKKKSKKHKDNEDAESVKSKKHKSHDCEKKKSKK 421

Query: 393 NRLHDNEVDTFAADRRSSKYRDDS-KGKK 476
           ++  DNE       ++S K + +   GKK
Sbjct: 422 HK--DNEDAESVKSKKSVKEKGEKHNGKK 448

---

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
 Frame = +3

Query: 228  DNSSREKHRDDSYRYHRSQDGGSLDVRSSKD--NTRDRSLEKHCKEEHNYSESRHNKNRL 401
            D  + +   +D   Y   +D  + DV   K   NT++  +EK  KEE +  E    K + 
Sbjct: 766  DKDAAKVLAEDEELYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKH 825

Query: 402  HD-----NEVDTFAADRRSSKYRDDSKGK 473
             D      E+     D   S Y DD KG+
Sbjct: 826  LDKKRKLKEMFDAEYDEGESTYFDDLKGE 854

---

>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated|
            transcription factor 1) (DATF-1) (hDido1)
          Length = 2240

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 219  ERSDNSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESR-HNKN 395
            ERS N  RE+  D    + R           S++ +R+R  E+  + + + S SR  +++
Sbjct: 2152 ERSANRDREREADRGKEWDR-----------SRERSRNRERERDRRRDRDRSRSRERDRD 2200

Query: 396  RLHDNEVDTFAADRRSSK 449
            +  D E      DR  SK
Sbjct: 2201 KARDRERGRDRKDRSKSK 2218

---

>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA (EC|
           3.1.4.17) (PDEase regA)
          Length = 793

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 231 NSSREKHRDDSYRYHRSQDGGSLDVRSSKDNTRDRSLEKHCKEEHNYSESRHNKNRLHDN 410
           N++   + ++S    + +D  SL+  SS +NT   +        ++ + S +N N +++N
Sbjct: 56  NNNNNNNNNNSNNNEKQKDIVSLENNSSSNNTTTTTTTTTTSNHNSNNNSNNNNNNINNN 115

Query: 411 EVD 419
            ++
Sbjct: 116 NIN 118

---

>ARP_PLAFA (P04931) Asparagine-rich protein (Ag319) (ARP) (Fragment)|
          Length = 537

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/126 (15%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
 Frame = +3

Query: 255 DDSYRYHRSQDGGSLDVRSS---KDNTRDRSLEKHCKEEHNYSESRHNKNRLH------- 404
           +++ + + + D G+++ +++   KDN ++ + +      + + E+ +N N +H       
Sbjct: 2   NNNNKNNNNNDDGNINYQNTNEFKDNKKNMNFKNQYNNNYKFDENMNNSNTMHSRNSNVE 61

Query: 405 ----DNEVD---------TFAADRRSSKYRDDSKGKKRFYEESVHNGDLEPRNAKEYHGD 545
               +N +D         T    R SS   ++++ + + Y     N ++  +N  + +  
Sbjct: 62  EHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNNNS 121

Query: 546 SKRRSD 563
           S + +D
Sbjct: 122 SMKNTD 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,196,910
Number of Sequences: 219361
Number of extensions: 1268861
Number of successful extensions: 4688
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4629
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---