Clone Information

BLAST Search Result

Clone Name	baal8f09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|X78877.1\|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for seri...	908	0.0
2	gb\|AY106653.1\| Zea mays PCO089814 mRNA sequence	220	3e-54
3	ref\|NM_185973.1\| Oryza sativa (japonica cultivar-group), mRNA	168	1e-38
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
5	dbj\|AP005184.5\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
6	gb\|AY224473.1\| Oryza sativa (japonica cultivar-group) isolate 29...	153	6e-34
7	ref\|XM_466920.2\| Oryza sativa (japonica cultivar-group), mRNA	60	7e-06
8	ref\|XM_507511.1\| PREDICTED Oryza sativa (japonica cultivar-group...	60	7e-06
9	ref\|XM_507510.1\| PREDICTED Oryza sativa (japonica cultivar-group...	60	7e-06
10	ref\|XM_506875.2\| PREDICTED Oryza sativa (japonica cultivar-group...	60	7e-06
11	gb\|AC136522.3\| Oryza sativa (japonica cultivar-group) chromosome...	60	7e-06
12	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
13	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
14	dbj\|AP004192.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
15	dbj\|AP004069.2\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
16	dbj\|AK107270.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
17	dbj\|AK107218.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
18	dbj\|AK106111.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
19	dbj\|AK104431.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
20	dbj\|AK104329.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
21	dbj\|AK071869.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
22	dbj\|AK064671.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	7e-06
23	emb\|Y09602.1\|HVCPMII H.vulgare gene encoding serine carboxypepti...	56	1e-04
24	dbj\|AK069959.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	1e-04
25	emb\|AJ890016.1\| Triticum aestivum partial mRNA for serine carbox...	48	0.027
26	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	46	0.11
27	gb\|AY104781.1\| Zea mays PCO124486 mRNA sequence	46	0.11
28	gb\|AF272325.1\|AF272325 Persea meridensis internal transcribed sp...	44	0.42
29	ref\|NM_192503.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.6
30	ref\|XM_848303.1\| PREDICTED: Canis familiaris similar to Sodium c...	42	1.6
31	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
32	dbj\|AP003284.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
33	dbj\|AK071667.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
34	gb\|CP000103.1\| Nitrosospira multiformis ATCC 25196, complete genome	42	1.6
35	ref\|XM_369035.1\| Magnaporthe grisea 70-15 chromosome VI hypothet...	40	6.5
36	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	40	6.5
37	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	6.5
38	emb\|BX569690.1\| Synechococcus sp. WH8102 complete genome; segmen...	40	6.5
39	emb\|AL939128.1\|SCO939128 Streptomyces coelicolor A3(2) complete ...	40	6.5
40	emb\|BX571731.5\| Zebrafish DNA sequence from clone CH211-195D1 in...	40	6.5
41	gb\|AY265405.1\| Litsea dilleniifolia internal transcribed spacer ...	40	6.5
42	gb\|AY265403.1\| Litsea glutinosa internal transcribed spacer 1, p...	40	6.5
43	gb\|AY265397.1\| Dodecadenia grandiflora internal transcribed spac...	40	6.5
44	gb\|AF272277.1\|AF272277 Laureae gen. sp. Hyland 14912 internal tr...	40	6.5
45	gb\|AF272248.1\|AF272248 Adenodaphne uniflora internal transcribed...	40	6.5
46	dbj\|AP006063.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
47	gb\|AF117582.1\|AF117582 Manduca sexta clone pMsmaC22 calcyphosine...	40	6.5
48	gb\|AF004835.1\|AF004835 Brevibacillus brevis tyrocidine biosynthe...	40	6.5

>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3
          Length = 1979

 Score =  908 bits (458), Expect = 0.0
 Identities = 475/480 (98%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atcatgattgggaacgcggtgatccacgactggacggacagcaagggcatgtacgacttc 60
            |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 868  atcatgattgggaacgcggtgatcaacgactggacggacagcaaaggcatgtacgacttc 927

                                                                        
Query: 61   ttctggacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  ttctggacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaac 987

                                                                        
Query: 121  ttcacggcctacggcgccggcgtggcgtcgaacgcgctctgcgacgccgcctcggacgag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  ttcacggcctacggcgccggcgtggcgtcgaacgcgctctgcgacgccgcctcggacgag 1047

                                                                        
Query: 181  gtcggcgagagcctcgcggacatcgacatntacaacatgctacgcgcccaactgccagtc 240
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1048 gtcggcgagagcctcgcggacatcgacatctacaacat-ctacgcgcccaactgccagtc 1106

                                                                        
Query: 241  ggagaagctcgtcacgccgcccatcgccccctcgatcgacaactttgatccgtgcacgga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 ggagaagctcgtcacgccgcccatcgccccctcgatcgacaactttgatccgtgcacgga 1166

                                                                        
Query: 301  ctactacgtggaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 ctactacgtggaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 1226

                                                                        
Query: 361  cacccgcctcgaccacccctggtcagcctgcagngacgtcttgacacgctgggtcgacag 420
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1227 cacccgcctcgaccacccctggtcagcctgcagtgacgtcttgacacgctgggtcgacag 1286

                                                                        
Query: 421  cgccaaaactgtcctgcctattatccaggagctgatgaagaacagcatccgggtctgggt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 cgccaaaactgtcctgcctattatccaggagctgatgaagaacagcatccgggtctgggt 1346

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>gb|AY106653.1| Zea mays PCO089814 mRNA sequence
          Length = 618

 Score =  220 bits (111), Expect = 3e-54
 Identities = 212/245 (86%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 198 ggacatcgacatntacaacatgctacgcgcccaactgccagtcggagaagctcgtcacgc 257
           |||||||||||| |||||||| |||||||||||||||||||||       |||||| |||
Sbjct: 194 ggacatcgacatctacaacat-ctacgcgcccaactgccagtcccccggcctcgtctcgc 252

                                                                       
Query: 258 cgcccatcgccccctcgatcgacaactttgatccgtgcacggactactacgtggaggcgt 317
           |||||||| |||| ||||| |||||||||||||||||| |||| || |||||||| || |
Sbjct: 253 cgcccatcaccccgtcgatggacaactttgatccgtgctcggattattacgtggaagcct 312

                                                                       
Query: 318 acctcaaccggccggacgtgcagaaggcgctgcacgccaacgtcacccgcctcgaccacc 377
           ||||||||   ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 313 acctcaacgacccggacgtgcagagggcgctccacgccaacgtcacccgcctcgaccacc 372

                                                                       
Query: 378 cctggtcagcctgcagngacgtcttgacacgctgggtcgacagcgccaaaactgtcctgc 437
           ||||||| |||||||| || ||||||| |||||||   ||||||||||  || |||||||
Sbjct: 373 cctggtccgcctgcagcgatgtcttgagacgctggactgacagcgccacgaccgtcctgc 432

                
Query: 438 ctatt 442
           |||||
Sbjct: 433 ctatt 437



 Score =  149 bits (75), Expect = 1e-32
 Identities = 93/99 (93%)
 Strand = Plus / Plus

                                                                       
Query: 26  acgactggacggacagcaagggcatgtacgacttcttctggacgcacgcgctcatctccg 85
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16  acgactggacggacaccaagggcatgtacgacttcttctggacgcacgcgctcatctccg 75

                                                  
Query: 86  acgagacggccgacggcatcagcaagaactgcaacttca 124
           ||| ||||||||||| |||| ||| | ||||||||||||
Sbjct: 76  acgcgacggccgacgccatcggcaggcactgcaacttca 114

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>ref|NM_185973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score =  168 bits (85), Expect = 1e-38
 Identities = 115/125 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatgattgggaacgcggtgatccacgactggacggacagcaagggcatgtacgacttc 60
           |||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||
Sbjct: 814 atcatgattgggaacgcggtgatcaacgactggacggacacaaaggggatgtacgacttc 873

                                                                       
Query: 61  ttctggacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaac 120
           |||||||||||||||||||||||||||||| |   ||||||||||| |||| ||||||||
Sbjct: 874 ttctggacgcacgcgctcatctccgacgaggccaacgacggcatcaccaagcactgcaac 933

                
Query: 121 ttcac 125
           |||||
Sbjct: 934 ttcac 938



 Score =  137 bits (69), Expect = 4e-29
 Identities = 191/232 (82%)
 Strand = Plus / Plus

                                                                        
Query: 249  tcgtcacgccgcccatcgccccctcgatcgacaactttgatccgtgcacggactactacg 308
            ||||| |||||||  || |||||||||| || | |||||||||||||||||| ||||| |
Sbjct: 1055 tcgtctcgccgccggtcaccccctcgattgagagctttgatccgtgcacggattactatg 1114

                                                                        
Query: 309  tggaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgtcacccgcc 368
            ||||||| |||||||||   || || ||||| |||||||||||||| ||| ||||| | |
Sbjct: 1115 tggaggcctacctcaacaaccctgatgtgcaaaaggcgctgcacgcaaacatcaccaggc 1174

                                                                        
Query: 369  tcgaccacccctggtcagcctgcagngacgtcttgacacgctgggtcgacagcgccaaaa 428
            | || ||||| ||||| || ||||| |  ||||||| ||||||||||||||||||   ||
Sbjct: 1175 ttgatcacccgtggtccgcttgcagtggagtcttgagacgctgggtcgacagcgcttcaa 1234

                                                                
Query: 429  ctgtcctgcctattatccaggagctgatgaagaacagcatccgggtctgggt 480
            | || ||||| |||||| |||||||  ||||||||| |||| | ||||||||
Sbjct: 1235 cggttctgcccattatcaaggagctcctgaagaacaacatcagagtctgggt 1286



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                        
Query: 198  ggacatcgacatntacaacatgctacgcgcccaactgccagtcg 241
            |||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 1002 ggacatcgacatctacaacat-ctacgcccccaactgccagtcg 1044

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  159 bits (80), Expect = 1e-35
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                            
Query: 6        gattgggaacgcggtgatccacgactggacggacagcaagggcatgtacgacttcttctg 65
                ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||
Sbjct: 27588747 gattgggaacgcggtgatcaacgactggacggacacaaaggggatgtacgacttcttctg 27588688

                                                                            
Query: 66       gacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaacttcac 125
                ||||||||||||||||||||||||| |   ||||||||||| |||| |||||||||||||
Sbjct: 27588687 gacgcacgcgctcatctccgacgaggccaacgacggcatcaccaagcactgcaacttcac 27588628



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                            
Query: 283      ctttgatccgtgcacggactactacgtggaggcgtacctcaaccggccggacgtgcagaa 342
                |||||||||||||||||| ||||| |||||||| |||||||||   || || ||||| ||
Sbjct: 27587950 ctttgatccgtgcacggattactatgtggaggcctacctcaacaaccctgatgtgcaaaa 27587891

                                                                   
Query: 343      ggcgctgcacgccaacgtcacccgcctcgaccacccctggtcagcctgcag 393
                |||||||||||| ||| ||||| | || || ||||| ||||| || |||||
Sbjct: 27587890 ggcgctgcacgcaaacatcaccaggcttgatcacccgtggtccgcttgcag 27587840



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                            
Query: 398      gtcttgacacgctgggtcgacagcgccaaaactgtcctgcctattatccaggagctgatg 457
                ||||||| ||||||||||||||||||   ||| || ||||| |||||| |||||||  ||
Sbjct: 27586334 gtcttgagacgctgggtcgacagcgcttcaacggttctgcccattatcaaggagctcctg 27586275

                                       
Query: 458      aagaacagcatccgggtctgggt 480
                ||||||| |||| | ||||||||
Sbjct: 27586274 aagaacaacatcagagtctgggt 27586252



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 198      ggacatcgacatntacaacatgctacgcgcccaactgccagtcg 241
                |||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 27588564 ggacatcgacatctacaacat-ctacgcccccaactgccagtcg 27588522

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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  159 bits (80), Expect = 1e-35
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                         
Query: 6     gattgggaacgcggtgatccacgactggacggacagcaagggcatgtacgacttcttctg 65
             ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||
Sbjct: 45740 gattgggaacgcggtgatcaacgactggacggacacaaaggggatgtacgacttcttctg 45681

                                                                         
Query: 66    gacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaacttcac 125
             ||||||||||||||||||||||||| |   ||||||||||| |||| |||||||||||||
Sbjct: 45680 gacgcacgcgctcatctccgacgaggccaacgacggcatcaccaagcactgcaacttcac 45621



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                         
Query: 283   ctttgatccgtgcacggactactacgtggaggcgtacctcaaccggccggacgtgcagaa 342
             |||||||||||||||||| ||||| |||||||| |||||||||   || || ||||| ||
Sbjct: 44943 ctttgatccgtgcacggattactatgtggaggcctacctcaacaaccctgatgtgcaaaa 44884

                                                                
Query: 343   ggcgctgcacgccaacgtcacccgcctcgaccacccctggtcagcctgcag 393
             |||||||||||| ||| ||||| | || || ||||| ||||| || |||||
Sbjct: 44883 ggcgctgcacgcaaacatcaccaggcttgatcacccgtggtccgcttgcag 44833



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 398   gtcttgacacgctgggtcgacagcgccaaaactgtcctgcctattatccaggagctgatg 457
             ||||||| ||||||||||||||||||   ||| || ||||| |||||| |||||||  ||
Sbjct: 43327 gtcttgagacgctgggtcgacagcgcttcaacggttctgcccattatcaaggagctcctg 43268

                                    
Query: 458   aagaacagcatccgggtctgggt 480
             ||||||| |||| | ||||||||
Sbjct: 43267 aagaacaacatcagagtctgggt 43245



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 198   ggacatcgacatntacaacatgctacgcgcccaactgccagtcg 241
             |||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 45557 ggacatcgacatctacaacat-ctacgcccccaactgccagtcg 45515

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>gb|AY224473.1| Oryza sativa (japonica cultivar-group) isolate 29039 serine
           carboxypepsidase mRNA, partial cds
          Length = 1338

 Score =  153 bits (77), Expect = 6e-34
 Identities = 114/125 (91%), Gaps = 1/125 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatgattgggaacgcggtgatccacgactggacggacagcaagggcatgtacgacttc 60
           |||||||||||||||||||||||| ||||||||||| |||  ||||| ||||||||||||
Sbjct: 578 atcatgattgggaacgcggtgatcaacgactggacg-acacaaaggggatgtacgacttc 636

                                                                       
Query: 61  ttctggacgcacgcgctcatctccgacgagacggccgacggcatcagcaagaactgcaac 120
           |||||||||||||||||||||||||||||| |   ||||||||||| |||| ||||||||
Sbjct: 637 ttctggacgcacgcgctcatctccgacgaggccaacgacggcatcaccaagcactgcaac 696

                
Query: 121 ttcac 125
           |||||
Sbjct: 697 ttcac 701



 Score =  129 bits (65), Expect = 9e-27
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 267  ccccctcgatcgacaactttgatccgtgcacggactactacgtggaggcgtacctcaacc 326
            |||||||||| || | |||||||||||||||||| ||||| |||||||| ||||||||| 
Sbjct: 836  ccccctcgattgagagctttgatccgtgcacggattactatgtggaggcctacctcaaca 895

                                                                        
Query: 327  ggccggacgtgcagaaggcgctgcacgccaacgtcacccgcctcgaccacccctggtcag 386
              || || ||||| |||||||||||||| ||| ||||| | || || ||||| ||||| |
Sbjct: 896  accctgatgtgcaaaaggcgctgcacgcaaacatcaccaggcttgatcacccgtggtccg 955

                                                                        
Query: 387  cctgcagngacgtcttgacacgctgggtcgacagcgccaaaactgtcctgcctattatcc 446
            | ||||| |  ||||||| ||||||||||||||||||   ||| || ||||| |||||| 
Sbjct: 956  cttgcagtggagtcttgagacgctgggtcgacagcgcttcaacggttctgcccattatca 1015

                                              
Query: 447  aggagctgatgaagaacagcatccgggtctgggt 480
            |||||||  | ||||||| |||| | ||||||||
Sbjct: 1016 aggagctcctkaagaacaacatcagagtctgggt 1049



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 198 ggacatcgacatntacaacatgctacgcgcccaactgccagtcg 241
           |||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 765 ggacatcgacatctacaacat-ctacgcccccaactgccagtcg 807

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>ref|XM_466920.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1807

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1199 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1248

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>ref|XM_507511.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1701

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1076 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1125

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>ref|XM_507510.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1704

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1079 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1128

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>ref|XM_506875.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1643_A10.33-1
            mRNA
          Length = 1720

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1081 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1130

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>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0037H03, complete sequence
          Length = 185881

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 322   caaccggccggacgtgcagaaggcgctgcacgccaacgtcac 363
             |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 73063 caaccggccggaagtgcagagggcgctccacgccaacgtcac 73022

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 322      caaccggccggacgtgcagaaggcgctgcacgccaacgtcac 363
                |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 10688463 caaccggccggaagtgcagagggcgctccacgccaacgtcac 10688422

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 311      gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
                |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 25467683 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 25467732

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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 311    gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
              |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 123345 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 123394

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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1626_B09
          Length = 58749

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 311   gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
             |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 12233 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 12282

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>dbj|AK107270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H11, full
            insert sequence
          Length = 1608

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 322  caaccggccggacgtgcagaaggcgctgcacgccaacgtcac 363
            |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 1062 caaccggccggaagtgcagagggcgctccacgccaacgtcac 1103

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>dbj|AK107218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C12, full
            insert sequence
          Length = 1561

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 322  caaccggccggacgtgcagaaggcgctgcacgccaacgtcac 363
            |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 1059 caaccggccggaagtgcagagggcgctccacgccaacgtcac 1100

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>dbj|AK106111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D11, full
            insert sequence
          Length = 1701

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1076 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1125

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>dbj|AK104431.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H12, full
            insert sequence
          Length = 1704

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1079 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1128

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>dbj|AK104329.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E12, full
            insert sequence
          Length = 1700

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1076 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1125

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>dbj|AK071869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118K14, full
            insert sequence
          Length = 1807

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgt 360
            |||| |||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct: 1199 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaacgt 1248

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>dbj|AK064671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E03, full
            insert sequence
          Length = 1744

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 322  caaccggccggacgtgcagaaggcgctgcacgccaacgtcac 363
            |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 1061 caaccggccggaagtgcagagggcgctccacgccaacgtcac 1102

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>emb|Y09602.1|HVCPMII H.vulgare gene encoding serine carboxypeptidase II, CP-MII
          Length = 6225

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 313  ggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgtcacc 364
            |||||||  |||||||| ||||||||||| ||| || |||||||||||||||
Sbjct: 3438 ggcgtactacaaccggcgggacgtgcagacggccctccacgccaacgtcacc 3489

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>dbj|AK069959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038G19, full
            insert sequence
          Length = 1720

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 311  gaggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaac 358
            |||| |||| |||||||| | ||||||||| |||||||||||||||||
Sbjct: 1080 gaggtgtacttcaaccgggctgacgtgcaggaggcgctgcacgccaac 1127

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>emb|AJ890016.1| Triticum aestivum partial mRNA for serine carboxypeptidase II,
           (cbp2 gene), cultivar Wyuna, from endosperm tissue
          Length = 892

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 313 ggcgtacctcaaccggccggacgtgcagaaggcgctgcacgccaacgtcacc 364
           |||||||  |||||||| |||||||||||  || || |||||||||||||||
Sbjct: 333 ggcgtactacaaccggcgggacgtgcagacagccctccacgccaacgtcacc 384

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 329    ccggacgtgcagaaggcgctgcacgcc 355
              |||||||||||||||||||||| ||||
Sbjct: 637817 ccggacgtgcagaaggcgctgctcgcc 637843

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>gb|AY104781.1| Zea mays PCO124486 mRNA sequence
          Length = 1279

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 316 gtacctcaaccggccggacgtgcagaaggcgctgcacgc 354
           |||||||||||| | ||||||||||  ||||||||||||
Sbjct: 347 gtacctcaaccgccgggacgtgcaggcggcgctgcacgc 385

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>gb|AF272325.1|AF272325 Persea meridensis internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene and internal transcribed spacer
           2, complete sequence; and 26S ribosomal RNA gene,
           partial sequence
          Length = 613

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 250 cgtcacgccgcccatcgccccc 271
           ||||||||||||||||||||||
Sbjct: 359 cgtcacgccgcccatcgccccc 380

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>ref|NM_192503.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1299

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 17  cggtgatccacgactggacgg 37
           |||||||||||||||||||||
Sbjct: 682 cggtgatccacgactggacgg 662

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>ref|XM_848303.1| PREDICTED: Canis familiaris similar to Sodium channel protein type IV
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.4) (Sodium channel protein, skeletal muscle
            alpha-subunit) (SkM1) (LOC610754), mRNA
          Length = 5514

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 166  gccgcctcggacgaggtcggcgaga 190
            |||||||||||||||| ||||||||
Sbjct: 2413 gccgcctcggacgaggacggcgaga 2437

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 17       cggtgatccacgactggacgg 37
                |||||||||||||||||||||
Sbjct: 27077840 cggtgatccacgactggacgg 27077820

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>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0671D01
          Length = 163006

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     cggtgatccacgactggacgg 37
              |||||||||||||||||||||
Sbjct: 136671 cggtgatccacgactggacgg 136651

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>dbj|AK071667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105N15, full
           insert sequence
          Length = 1659

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 17  cggtgatccacgactggacgg 37
           |||||||||||||||||||||
Sbjct: 785 cggtgatccacgactggacgg 765

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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 90      gacggccgacggcatcagcaa 110
               |||||||||||||||||||||
Sbjct: 1703068 gacggccgacggcatcagcaa 1703088

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>ref|XM_369035.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00209.4) partial mRNA
          Length = 13452

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  cgctctgcgacgccgcctcg 174
            ||||||||||||||||||||
Sbjct: 2597 cgctctgcgacgccgcctcg 2616

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 341     aaggcgctgcacgccaacgtcacc 364
               |||||||||||||||| |||||||
Sbjct: 2517046 aaggcgctgcacgccatcgtcacc 2517069

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     cggcgccggcgtggcgtcga 151
               ||||||||||||||||||||
Sbjct: 3162289 cggcgccggcgtggcgtcga 3162308

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>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ccgcctcgaccacccctggt 383
              ||||||||||||||||||||
Sbjct: 169716 ccgcctcgaccacccctggt 169697

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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   tccaggagctgatgaagaac 463
             ||||||||||||||||||||
Sbjct: 75946 tccaggagctgatgaagaac 75965

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>emb|BX571731.5| Zebrafish DNA sequence from clone CH211-195D1 in linkage group 9,
             complete sequence
          Length = 76779

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    cgagacggccgacggcatca 106
             ||||||||||||||||||||
Sbjct: 54982 cgagacggccgacggcatca 55001

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>gb|AY265405.1| Litsea dilleniifolia internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 250 cgtcacgccgcccatcgccccctc 273
           ||||||||| ||||||||||||||
Sbjct: 348 cgtcacgccacccatcgccccctc 371

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>gb|AY265403.1| Litsea glutinosa internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene and internal transcribed spacer
           2, complete sequence; and 26S ribosomal RNA gene,
           partial sequence
          Length = 621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 250 cgtcacgccgcccatcgccccctc 273
           |||||||||||||| |||||||||
Sbjct: 342 cgtcacgccgcccaccgccccctc 365

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>gb|AY265397.1| Dodecadenia grandiflora internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 598

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 250 cgtcacgccgcccatcgccccctc 273
           ||||||||| ||||||||||||||
Sbjct: 320 cgtcacgccacccatcgccccctc 343

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>gb|AF272277.1|AF272277 Laureae gen. sp. Hyland 14912 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 625

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 250 cgtcacgccgcccatcgccccctc 273
           ||||||||| ||||||||||||||
Sbjct: 374 cgtcacgccacccatcgccccctc 397

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>gb|AF272248.1|AF272248 Adenodaphne uniflora internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 250 cgtcacgccgcccatcgccccctc 273
           ||||||||| ||||||||||||||
Sbjct: 383 cgtcacgccacccatcgccccctc 406

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>dbj|AP006063.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0022O06
          Length = 180769

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ggacgaggtcggcgagagcc 193
             ||||||||||||||||||||
Sbjct: 30802 ggacgaggtcggcgagagcc 30783

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>gb|AF117582.1|AF117582 Manduca sexta clone pMsmaC22 calcyphosine-like protein mRNA,
           complete cds
          Length = 916

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 447 aggagctgatgaagaacagc 466
           ||||||||||||||||||||
Sbjct: 127 aggagctgatgaagaacagc 146

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>gb|AF004835.1|AF004835 Brevibacillus brevis tyrocidine biosynthesis operon, tyrocidine
             synthetase 1 (tycA), tyrocidine synthetase 2 (tycB),
             tyrocidine synthetase 3 (tycC), putative ABC-transporter
             TycD (tycD), putative ABC-transporter TycE (tycE) and
             putative thioesterase GrsT homolog (tycF) genes, complete
             cds
          Length = 40897

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   agcctcgcggacatcgacat 209
             ||||||||||||||||||||
Sbjct: 19549 agcctcgcggacatcgacat 19568


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,357,745
Number of Sequences: 3902068
Number of extensions: 2357745
Number of successful extensions: 48176
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47687
Number of HSP's gapped (non-prelim): 482
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result